data_2PX6 # _model_server_result.job_id kJHnNoTRHe_mICZpNGACoA _model_server_result.datetime_utc '2024-11-05 10:34:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2px6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":71}' # _entry.id 2PX6 # _exptl.entry_id 2PX6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.82 _cell.angle_gamma 90 _cell.entry_id 2PX6 _cell.length_a 41.86 _cell.length_b 94.32 _cell.length_c 69.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PX6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 113 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 2308 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C1' _struct_conn.ptnr2_label_comp_id DH9 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DH9 _struct_conn.ptnr2_auth_seq_id 3000 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.379 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 173 n n S1 HS1 DTT sing 174 n n C1 C2 DTT sing 175 n n C1 H11 DTT sing 176 n n C1 H12 DTT sing 177 n n C2 O2 DTT sing 178 n n C2 C3 DTT sing 179 n n C2 H2 DTT sing 180 n n O2 HO2 DTT sing 181 n n C3 O3 DTT sing 182 n n C3 C4 DTT sing 183 n n C3 H3 DTT sing 184 n n O3 HO3 DTT sing 185 n n C4 S4 DTT sing 186 n n C4 H41 DTT sing 187 n n C4 H42 DTT sing 188 n n S4 HS2 DTT sing 189 n n # _atom_sites.entry_id 2PX6 _atom_sites.fract_transf_matrix[1][1] 0.023889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002435 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DH9 A 1 3000 3000 DH9 DH9 . D 2 DH9 B 1 61 61 DH9 DH9 . E 3 DTT B 1 71 71 DTT DTT . F 4 HOH A 1 1 1 HOH HOH . F 4 HOH A 2 2 2 HOH HOH . F 4 HOH A 3 3 3 HOH HOH . F 4 HOH A 4 4 4 HOH HOH . F 4 HOH A 5 11 11 HOH HOH . F 4 HOH A 6 12 12 HOH HOH . F 4 HOH A 7 18 18 HOH HOH . F 4 HOH A 8 20 20 HOH HOH . F 4 HOH A 9 25 25 HOH HOH . F 4 HOH A 10 26 26 HOH HOH . F 4 HOH A 11 27 27 HOH HOH . F 4 HOH A 12 28 28 HOH HOH . F 4 HOH A 13 29 29 HOH HOH . F 4 HOH A 14 30 30 HOH HOH . F 4 HOH A 15 34 34 HOH HOH . F 4 HOH A 16 35 35 HOH HOH . F 4 HOH A 17 36 36 HOH HOH . F 4 HOH A 18 37 37 HOH HOH . F 4 HOH A 19 38 38 HOH HOH . F 4 HOH A 20 39 39 HOH HOH . F 4 HOH A 21 40 40 HOH HOH . F 4 HOH A 22 43 43 HOH HOH . F 4 HOH A 23 49 49 HOH HOH . F 4 HOH A 24 50 50 HOH HOH . F 4 HOH A 25 52 52 HOH HOH . F 4 HOH A 26 53 53 HOH HOH . G 4 HOH B 1 5 5 HOH HOH . G 4 HOH B 2 6 6 HOH HOH . G 4 HOH B 3 7 7 HOH HOH . G 4 HOH B 4 8 8 HOH HOH . G 4 HOH B 5 9 9 HOH HOH . G 4 HOH B 6 10 10 HOH HOH . G 4 HOH B 7 13 13 HOH HOH . G 4 HOH B 8 14 14 HOH HOH . G 4 HOH B 9 15 15 HOH HOH . G 4 HOH B 10 16 16 HOH HOH . G 4 HOH B 11 17 17 HOH HOH . G 4 HOH B 12 19 19 HOH HOH . G 4 HOH B 13 21 21 HOH HOH . G 4 HOH B 14 22 22 HOH HOH . G 4 HOH B 15 23 23 HOH HOH . G 4 HOH B 16 24 24 HOH HOH . G 4 HOH B 17 31 31 HOH HOH . G 4 HOH B 18 32 32 HOH HOH . G 4 HOH B 19 33 33 HOH HOH . G 4 HOH B 20 41 41 HOH HOH . G 4 HOH B 21 42 42 HOH HOH . G 4 HOH B 22 44 44 HOH HOH . G 4 HOH B 23 45 45 HOH HOH . G 4 HOH B 24 46 46 HOH HOH . G 4 HOH B 25 47 47 HOH HOH . G 4 HOH B 26 48 48 HOH HOH . G 4 HOH B 27 51 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . E 3 0.34 -0.388 15.204 1 25.56 ? S1 DTT 71 B 1 HETATM 2 C C1 DTT . . . E 3 -0.05 -0.833 16.915 1 22.97 ? C1 DTT 71 B 1 HETATM 3 C C2 DTT . . . E 3 -0.703 -2.199 16.99 1 24.62 ? C2 DTT 71 B 1 HETATM 4 O O2 DTT . . . E 3 -2.008 -2.159 16.422 1 23.45 ? O2 DTT 71 B 1 HETATM 5 C C3 DTT . . . E 3 -0.807 -2.611 18.447 1 25.71 ? C3 DTT 71 B 1 HETATM 6 O O3 DTT . . . E 3 -1.666 -1.667 19.136 1 26.32 ? O3 DTT 71 B 1 HETATM 7 C C4 DTT . . . E 3 -1.304 -4.056 18.577 1 23.66 ? C4 DTT 71 B 1 HETATM 8 S S4 DTT . . . E 3 -0.933 -4.738 20.224 1 23.04 ? S4 DTT 71 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #