data_2PXC
#
_model_server_result.job_id            T3W0A22qpUBFr20ROxI0pA 
_model_server_result.datetime_utc      '2024-11-22 19:56:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pxc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":500}' 
#
_entry.id    2PXC 
#
_exptl.entry_id    2PXC 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2PXC 
_cell.length_a            81.021 
_cell.length_b            81.021 
_cell.length_c            94.011 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PXC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 359 n n 
N HN1 SAM sing 360 n n 
N HN2 SAM sing 361 n n 
CA C SAM sing 362 n n 
CA CB SAM sing 363 n n 
CA HA SAM sing 364 n n 
C O SAM doub 365 n n 
C OXT SAM sing 366 n n 
CB CG SAM sing 367 n n 
CB HB1 SAM sing 368 n n 
CB HB2 SAM sing 369 n n 
CG SD SAM sing 370 n n 
CG HG1 SAM sing 371 n n 
CG HG2 SAM sing 372 n n 
SD CE SAM sing 373 n n 
SD C5' SAM sing 374 n n 
CE HE1 SAM sing 375 n n 
CE HE2 SAM sing 376 n n 
CE HE3 SAM sing 377 n n 
C5' C4' SAM sing 378 n n 
C5' "H5'1" SAM sing 379 n n 
C5' "H5'2" SAM sing 380 n n 
C4' O4' SAM sing 381 n n 
C4' C3' SAM sing 382 n n 
C4' H4' SAM sing 383 n n 
O4' C1' SAM sing 384 n n 
C3' O3' SAM sing 385 n n 
C3' C2' SAM sing 386 n n 
C3' H3' SAM sing 387 n n 
O3' HO3' SAM sing 388 n n 
C2' O2' SAM sing 389 n n 
C2' C1' SAM sing 390 n n 
C2' H2' SAM sing 391 n n 
O2' HO2' SAM sing 392 n n 
C1' N9 SAM sing 393 n n 
C1' H1' SAM sing 394 n n 
N9 C8 SAM sing 395 n y 
N9 C4 SAM sing 396 n y 
C8 N7 SAM doub 397 n y 
C8 H8 SAM sing 398 n n 
N7 C5 SAM sing 399 n y 
C5 C6 SAM sing 400 n y 
C5 C4 SAM doub 401 n y 
C6 N6 SAM sing 402 n n 
C6 N1 SAM doub 403 n y 
N6 HN61 SAM sing 404 n n 
N6 HN62 SAM sing 405 n n 
N1 C2 SAM sing 406 n y 
C2 N3 SAM doub 407 n y 
C2 H2 SAM sing 408 n n 
N3 C4 SAM sing 409 n y 
#
_atom_sites.entry_id                     2PXC 
_atom_sites.fract_transf_matrix[1][1]    0.012342 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012342 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010637 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAM A 1 500 500 SAM SAM . 
C 3 G3A A 1 501 501 G3A GTA . 
D 3 G3A A 1 502 502 G3A GTA . 
E 4 HOH A 1 600 600 HOH HOH . 
E 4 HOH A 2 601 601 HOH HOH . 
E 4 HOH A 3 602 602 HOH HOH . 
E 4 HOH A 4 603 603 HOH HOH . 
E 4 HOH A 5 606 606 HOH HOH . 
E 4 HOH A 6 607 607 HOH HOH . 
E 4 HOH A 7 608 608 HOH HOH . 
E 4 HOH A 8 609 609 HOH HOH . 
E 4 HOH A 9 610 610 HOH HOH . 
E 4 HOH A 10 611 611 HOH HOH . 
E 4 HOH A 11 612 612 HOH HOH . 
E 4 HOH A 12 613 613 HOH HOH . 
E 4 HOH A 13 614 614 HOH HOH . 
E 4 HOH A 14 615 615 HOH HOH . 
E 4 HOH A 15 617 617 HOH HOH . 
E 4 HOH A 16 618 618 HOH HOH . 
E 4 HOH A 17 619 619 HOH HOH . 
E 4 HOH A 18 665 665 HOH HOH . 
E 4 HOH A 19 666 666 HOH HOH . 
E 4 HOH A 20 667 667 HOH HOH . 
E 4 HOH A 21 668 668 HOH HOH . 
E 4 HOH A 22 669 669 HOH HOH . 
E 4 HOH A 23 670 670 HOH HOH . 
E 4 HOH A 24 671 671 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . B 2 -16.028 21.139 -8.104 1 39.97 ? N SAM 500 A 1 
HETATM 2 C CA SAM . . . B 2 -16.098 21.174 -9.596 1 48.54 ? CA SAM 500 A 1 
HETATM 3 C C SAM . . . B 2 -15.756 22.556 -10.147 1 50.05 ? C SAM 500 A 1 
HETATM 4 O O SAM . . . B 2 -15.591 23.531 -9.413 1 55.91 ? O SAM 500 A 1 
HETATM 5 O OXT SAM . . . B 2 -15.654 22.74 -11.354 1 44.09 ? OXT SAM 500 A 1 
HETATM 6 C CB SAM . . . B 2 -17.506 20.853 -10.076 1 50.74 ? CB SAM 500 A 1 
HETATM 7 C CG SAM . . . B 2 -18.049 19.486 -9.675 1 61.28 ? CG SAM 500 A 1 
HETATM 8 S SD SAM . . . B 2 -18.33 18.424 -11.106 1 62.37 ? SD SAM 500 A 1 
HETATM 9 C CE SAM . . . B 2 -20.018 18.849 -11.613 1 70.7 ? CE SAM 500 A 1 
HETATM 10 C C5' SAM . . . B 2 -18.59 16.821 -10.315 1 59.31 ? C5' SAM 500 A 1 
HETATM 11 C C4' SAM . . . B 2 -17.823 15.781 -11.115 1 61.51 ? C4' SAM 500 A 1 
HETATM 12 O O4' SAM . . . B 2 -17.76 14.569 -10.403 1 59.32 ? O4' SAM 500 A 1 
HETATM 13 C C3' SAM . . . B 2 -18.45 15.468 -12.478 1 62.21 ? C3' SAM 500 A 1 
HETATM 14 O O3' SAM . . . B 2 -17.772 16.109 -13.537 1 67.44 ? O3' SAM 500 A 1 
HETATM 15 C C2' SAM . . . B 2 -18.336 13.965 -12.613 1 59.37 ? C2' SAM 500 A 1 
HETATM 16 O O2' SAM . . . B 2 -17.656 13.598 -13.791 1 53.98 ? O2' SAM 500 A 1 
HETATM 17 C C1' SAM . . . B 2 -17.564 13.551 -11.36 1 61.41 ? C1' SAM 500 A 1 
HETATM 18 N N9 SAM . . . B 2 -17.978 12.243 -10.823 1 61.64 ? N9 SAM 500 A 1 
HETATM 19 C C8 SAM . . . B 2 -19.237 11.686 -10.784 1 57.19 ? C8 SAM 500 A 1 
HETATM 20 N N7 SAM . . . B 2 -19.134 10.464 -10.217 1 57.62 ? N7 SAM 500 A 1 
HETATM 21 C C5 SAM . . . B 2 -17.836 10.243 -9.899 1 55.08 ? C5 SAM 500 A 1 
HETATM 22 C C6 SAM . . . B 2 -17.187 9.177 -9.302 1 58.96 ? C6 SAM 500 A 1 
HETATM 23 N N6 SAM . . . B 2 -17.88 8.103 -8.935 1 63.02 ? N6 SAM 500 A 1 
HETATM 24 N N1 SAM . . . B 2 -15.824 9.243 -9.096 1 62.08 ? N1 SAM 500 A 1 
HETATM 25 C C2 SAM . . . B 2 -15.102 10.354 -9.487 1 56.38 ? C2 SAM 500 A 1 
HETATM 26 N N3 SAM . . . B 2 -15.761 11.408 -10.076 1 51.1 ? N3 SAM 500 A 1 
HETATM 27 C C4 SAM . . . B 2 -17.099 11.351 -10.274 1 52.14 ? C4 SAM 500 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#