data_2PXC # _model_server_result.job_id jONzWk-1blVSlsZq7bwLKg _model_server_result.datetime_utc '2024-11-22 19:48:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pxc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 2PXC # _exptl.entry_id 2PXC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 772.406 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PXC _cell.length_a 81.021 _cell.length_b 81.021 _cell.length_c 94.011 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PXC _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C20 H27 N10 O17 P3' _chem_comp.formula_weight 772.406 _chem_comp.id G3A _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O36 C36 G3A doub 83 n n C36 N31 G3A sing 84 n n C36 C35 G3A sing 85 n n N31 C32 G3A sing 86 n n N31 HN31 G3A sing 87 n n C32 N32 G3A sing 88 n n C32 N33 G3A doub 89 n n N32 H321 G3A sing 90 n n N32 H322 G3A sing 91 n n N33 C34 G3A sing 92 n n C35 C34 G3A doub 93 n y C35 N37 G3A sing 94 n y C34 N39 G3A sing 95 n y N37 C38 G3A doub 96 n y C38 N39 G3A sing 97 n y C38 H38 G3A sing 98 n n N39 C41 G3A sing 99 n n C41 C42 G3A sing 100 n n C41 O44 G3A sing 101 n n C41 H41 G3A sing 102 n n O44 C44 G3A sing 103 n n C42 O42 G3A sing 104 n n C42 C43 G3A sing 105 n n C42 H42 G3A sing 106 n n O42 HO42 G3A sing 107 n n C43 O43 G3A sing 108 n n C43 C44 G3A sing 109 n n C43 H43 G3A sing 110 n n O43 HO43 G3A sing 111 n n C44 C45 G3A sing 112 n n C44 H44 G3A sing 113 n n C45 O45 G3A sing 114 n n C45 H451 G3A sing 115 n n C45 H452 G3A sing 116 n n O45 PA G3A sing 117 n n PA O2A G3A doub 118 n n PA O1 G3A sing 119 n n PA O1A G3A sing 120 n n O1A HO1A G3A sing 121 n n O1 PB G3A sing 122 n n PB O3A G3A sing 123 n n PB O3B G3A doub 124 n n PB O2B G3A sing 125 n n O2B HO2B G3A sing 126 n n O3A PG G3A sing 127 n n PG O1G G3A doub 128 n n PG O25 G3A sing 129 n n PG O2G G3A sing 130 n n O2G HO2G G3A sing 131 n n O25 C25 G3A sing 132 n n C25 C24 G3A sing 133 n n C25 H251 G3A sing 134 n n C25 H252 G3A sing 135 n n C24 O24 G3A sing 136 n n C24 C23 G3A sing 137 n n C24 H24 G3A sing 138 n n C23 C22 G3A sing 139 n n C23 O23 G3A sing 140 n n C23 H23 G3A sing 141 n n O23 HO23 G3A sing 142 n n C22 C21 G3A sing 143 n n C22 O22 G3A sing 144 n n C22 H22 G3A sing 145 n n O22 HO22 G3A sing 146 n n O24 C21 G3A sing 147 n n C21 N19 G3A sing 148 n n C21 H21 G3A sing 149 n n N19 C14 G3A sing 150 n y N19 C18 G3A sing 151 n y C14 C15 G3A doub 152 n y C14 N13 G3A sing 153 n y N13 C12 G3A doub 154 n y C12 N11 G3A sing 155 n y C12 H12 G3A sing 156 n n N11 C16 G3A doub 157 n y C18 N17 G3A doub 158 n y C18 H18 G3A sing 159 n n N17 C15 G3A sing 160 n y C15 C16 G3A sing 161 n y C16 N16 G3A sing 162 n n N16 H161 G3A sing 163 n n N16 H162 G3A sing 164 n n # _atom_sites.entry_id 2PXC _atom_sites.fract_transf_matrix[1][1] 0.012342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 500 500 SAM SAM . C 3 G3A A 1 501 501 G3A GTA . D 3 G3A A 1 502 502 G3A GTA . E 4 HOH A 1 600 600 HOH HOH . E 4 HOH A 2 601 601 HOH HOH . E 4 HOH A 3 602 602 HOH HOH . E 4 HOH A 4 603 603 HOH HOH . E 4 HOH A 5 606 606 HOH HOH . E 4 HOH A 6 607 607 HOH HOH . E 4 HOH A 7 608 608 HOH HOH . E 4 HOH A 8 609 609 HOH HOH . E 4 HOH A 9 610 610 HOH HOH . E 4 HOH A 10 611 611 HOH HOH . E 4 HOH A 11 612 612 HOH HOH . E 4 HOH A 12 613 613 HOH HOH . E 4 HOH A 13 614 614 HOH HOH . E 4 HOH A 14 615 615 HOH HOH . E 4 HOH A 15 617 617 HOH HOH . E 4 HOH A 16 618 618 HOH HOH . E 4 HOH A 17 619 619 HOH HOH . E 4 HOH A 18 665 665 HOH HOH . E 4 HOH A 19 666 666 HOH HOH . E 4 HOH A 20 667 667 HOH HOH . E 4 HOH A 21 668 668 HOH HOH . E 4 HOH A 22 669 669 HOH HOH . E 4 HOH A 23 670 670 HOH HOH . E 4 HOH A 24 671 671 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O36 G3A . . . C 3 -37.566 20.01 -18.188 1 65.98 ? O36 G3A 501 A 1 HETATM 2 C C36 G3A . . . C 3 -37.851 19.876 -16.978 1 65.85 ? C36 G3A 501 A 1 HETATM 3 N N31 G3A . . . C 3 -39.101 20.119 -16.556 1 64.14 ? N31 G3A 501 A 1 HETATM 4 C C32 G3A . . . C 3 -39.425 19.974 -15.261 1 62.76 ? C32 G3A 501 A 1 HETATM 5 N N32 G3A . . . C 3 -40.697 20.225 -14.865 1 59.74 ? N32 G3A 501 A 1 HETATM 6 N N33 G3A . . . C 3 -38.493 19.583 -14.351 1 61.27 ? N33 G3A 501 A 1 HETATM 7 C C35 G3A . . . C 3 -36.874 19.476 -16.067 1 64.56 ? C35 G3A 501 A 1 HETATM 8 C C34 G3A . . . C 3 -37.214 19.329 -14.729 1 62.51 ? C34 G3A 501 A 1 HETATM 9 N N37 G3A . . . C 3 -35.566 19.17 -16.185 1 60.38 ? N37 G3A 501 A 1 HETATM 10 C C38 G3A . . . C 3 -35.108 18.842 -14.952 1 62.32 ? C38 G3A 501 A 1 HETATM 11 N N39 G3A . . . C 3 -36.114 18.938 -14.062 1 62.21 ? N39 G3A 501 A 1 HETATM 12 C C41 G3A . . . C 3 -36.024 18.679 -12.596 1 58.73 ? C41 G3A 501 A 1 HETATM 13 O O44 G3A . . . C 3 -35.055 19.559 -12.015 1 53.32 ? O44 G3A 501 A 1 HETATM 14 C C42 G3A . . . C 3 -35.542 17.282 -12.244 1 60.17 ? C42 G3A 501 A 1 HETATM 15 O O42 G3A . . . C 3 -36.166 16.853 -11.029 1 61.66 ? O42 G3A 501 A 1 HETATM 16 C C43 G3A . . . C 3 -34.056 17.428 -12.011 1 55.3 ? C43 G3A 501 A 1 HETATM 17 O O43 G3A . . . C 3 -33.543 16.421 -11.141 1 44.77 ? O43 G3A 501 A 1 HETATM 18 C C44 G3A . . . C 3 -33.973 18.819 -11.421 1 56.13 ? C44 G3A 501 A 1 HETATM 19 C C45 G3A . . . C 3 -32.631 19.461 -11.711 1 61.12 ? C45 G3A 501 A 1 HETATM 20 O O45 G3A . . . C 3 -32.707 20.093 -12.988 1 71.16 ? O45 G3A 501 A 1 HETATM 21 P PA G3A . . . C 3 -31.385 20.555 -13.764 1 63.35 ? PA G3A 501 A 1 HETATM 22 O O1A G3A . . . C 3 -31.49 22.052 -13.876 1 59.33 ? O1A G3A 501 A 1 HETATM 23 O O2A G3A . . . C 3 -31.244 19.691 -14.986 1 73.12 ? O2A G3A 501 A 1 HETATM 24 O O1 G3A . . . C 3 -30.246 20.063 -12.733 1 66.9 ? O1 G3A 501 A 1 HETATM 25 P PB G3A . . . C 3 -28.912 20.868 -12.33 1 74.43 ? PB G3A 501 A 1 HETATM 26 O O2B G3A . . . C 3 -29.039 22.368 -12.568 1 55.14 ? O2B G3A 501 A 1 HETATM 27 O O3B G3A . . . C 3 -28.541 20.401 -10.943 1 83.64 ? O3B G3A 501 A 1 HETATM 28 O O3A G3A . . . C 3 -27.884 20.193 -13.382 1 63.94 ? O3A G3A 501 A 1 HETATM 29 P PG G3A . . . C 3 -26.437 20.837 -13.695 1 60.16 ? PG G3A 501 A 1 HETATM 30 O O1G G3A . . . C 3 -26.161 21.771 -12.532 1 59.61 ? O1G G3A 501 A 1 HETATM 31 O O2G G3A . . . C 3 -25.543 19.688 -14.065 1 64.87 ? O2G G3A 501 A 1 HETATM 32 O O25 G3A . . . C 3 -26.632 21.74 -15.011 1 55.08 ? O25 G3A 501 A 1 HETATM 33 C C25 G3A . . . C 3 -27.952 21.509 -15.514 1 65.88 ? C25 G3A 501 A 1 HETATM 34 C C24 G3A . . . C 3 -28.094 21.142 -16.747 1 61.82 ? C24 G3A 501 A 1 HETATM 35 C C23 G3A . . . C 3 -29.431 20.81 -17.266 1 60.56 ? C23 G3A 501 A 1 HETATM 36 O O23 G3A . . . C 3 -30.28 21.957 -17.279 1 70.13 ? O23 G3A 501 A 1 HETATM 37 C C22 G3A . . . C 3 -29.028 20.217 -18.604 1 60.67 ? C22 G3A 501 A 1 HETATM 38 O O22 G3A . . . C 3 -29.487 21.052 -19.664 1 70.93 ? O22 G3A 501 A 1 HETATM 39 O O24 G3A . . . C 3 -26.982 21.005 -17.642 1 60.23 ? O24 G3A 501 A 1 HETATM 40 C C21 G3A . . . C 3 -27.492 20.123 -18.629 1 65.38 ? C21 G3A 501 A 1 HETATM 41 N N19 G3A . . . C 3 -26.99 18.756 -18.311 1 64.38 ? N19 G3A 501 A 1 HETATM 42 C C14 G3A . . . C 3 -27.235 17.674 -19.042 1 64.13 ? C14 G3A 501 A 1 HETATM 43 N N13 G3A . . . C 3 -27.938 17.478 -20.154 1 62.28 ? N13 G3A 501 A 1 HETATM 44 C C12 G3A . . . C 3 -28.076 16.171 -20.8 1 64.35 ? C12 G3A 501 A 1 HETATM 45 N N11 G3A . . . C 3 -27.383 15.06 -20.136 1 68.41 ? N11 G3A 501 A 1 HETATM 46 C C18 G3A . . . C 3 -26.207 18.407 -17.271 1 63.75 ? C18 G3A 501 A 1 HETATM 47 N N17 G3A . . . C 3 -25.935 17.078 -17.311 1 69.95 ? N17 G3A 501 A 1 HETATM 48 C C15 G3A . . . C 3 -26.547 16.554 -18.392 1 71.94 ? C15 G3A 501 A 1 HETATM 49 C C16 G3A . . . C 3 -26.665 15.209 -19.014 1 68.68 ? C16 G3A 501 A 1 HETATM 50 N N16 G3A . . . C 3 -26.051 14.135 -18.461 1 65.47 ? N16 G3A 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 50 #