data_2PXC # _model_server_result.job_id pg7CbEPQw-Oe2G1X3npDqA _model_server_result.datetime_utc '2024-11-22 20:05:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pxc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 2PXC # _exptl.entry_id 2PXC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 772.406 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PXC _cell.length_a 81.021 _cell.length_b 81.021 _cell.length_c 94.011 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PXC _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C20 H27 N10 O17 P3' _chem_comp.formula_weight 772.406 _chem_comp.id G3A _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O36 C36 G3A doub 83 n n C36 N31 G3A sing 84 n n C36 C35 G3A sing 85 n n N31 C32 G3A sing 86 n n N31 HN31 G3A sing 87 n n C32 N32 G3A sing 88 n n C32 N33 G3A doub 89 n n N32 H321 G3A sing 90 n n N32 H322 G3A sing 91 n n N33 C34 G3A sing 92 n n C35 C34 G3A doub 93 n y C35 N37 G3A sing 94 n y C34 N39 G3A sing 95 n y N37 C38 G3A doub 96 n y C38 N39 G3A sing 97 n y C38 H38 G3A sing 98 n n N39 C41 G3A sing 99 n n C41 C42 G3A sing 100 n n C41 O44 G3A sing 101 n n C41 H41 G3A sing 102 n n O44 C44 G3A sing 103 n n C42 O42 G3A sing 104 n n C42 C43 G3A sing 105 n n C42 H42 G3A sing 106 n n O42 HO42 G3A sing 107 n n C43 O43 G3A sing 108 n n C43 C44 G3A sing 109 n n C43 H43 G3A sing 110 n n O43 HO43 G3A sing 111 n n C44 C45 G3A sing 112 n n C44 H44 G3A sing 113 n n C45 O45 G3A sing 114 n n C45 H451 G3A sing 115 n n C45 H452 G3A sing 116 n n O45 PA G3A sing 117 n n PA O2A G3A doub 118 n n PA O1 G3A sing 119 n n PA O1A G3A sing 120 n n O1A HO1A G3A sing 121 n n O1 PB G3A sing 122 n n PB O3A G3A sing 123 n n PB O3B G3A doub 124 n n PB O2B G3A sing 125 n n O2B HO2B G3A sing 126 n n O3A PG G3A sing 127 n n PG O1G G3A doub 128 n n PG O25 G3A sing 129 n n PG O2G G3A sing 130 n n O2G HO2G G3A sing 131 n n O25 C25 G3A sing 132 n n C25 C24 G3A sing 133 n n C25 H251 G3A sing 134 n n C25 H252 G3A sing 135 n n C24 O24 G3A sing 136 n n C24 C23 G3A sing 137 n n C24 H24 G3A sing 138 n n C23 C22 G3A sing 139 n n C23 O23 G3A sing 140 n n C23 H23 G3A sing 141 n n O23 HO23 G3A sing 142 n n C22 C21 G3A sing 143 n n C22 O22 G3A sing 144 n n C22 H22 G3A sing 145 n n O22 HO22 G3A sing 146 n n O24 C21 G3A sing 147 n n C21 N19 G3A sing 148 n n C21 H21 G3A sing 149 n n N19 C14 G3A sing 150 n y N19 C18 G3A sing 151 n y C14 C15 G3A doub 152 n y C14 N13 G3A sing 153 n y N13 C12 G3A doub 154 n y C12 N11 G3A sing 155 n y C12 H12 G3A sing 156 n n N11 C16 G3A doub 157 n y C18 N17 G3A doub 158 n y C18 H18 G3A sing 159 n n N17 C15 G3A sing 160 n y C15 C16 G3A sing 161 n y C16 N16 G3A sing 162 n n N16 H161 G3A sing 163 n n N16 H162 G3A sing 164 n n # _atom_sites.entry_id 2PXC _atom_sites.fract_transf_matrix[1][1] 0.012342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 500 500 SAM SAM . C 3 G3A A 1 501 501 G3A GTA . D 3 G3A A 1 502 502 G3A GTA . E 4 HOH A 1 600 600 HOH HOH . E 4 HOH A 2 601 601 HOH HOH . E 4 HOH A 3 602 602 HOH HOH . E 4 HOH A 4 603 603 HOH HOH . E 4 HOH A 5 606 606 HOH HOH . E 4 HOH A 6 607 607 HOH HOH . E 4 HOH A 7 608 608 HOH HOH . E 4 HOH A 8 609 609 HOH HOH . E 4 HOH A 9 610 610 HOH HOH . E 4 HOH A 10 611 611 HOH HOH . E 4 HOH A 11 612 612 HOH HOH . E 4 HOH A 12 613 613 HOH HOH . E 4 HOH A 13 614 614 HOH HOH . E 4 HOH A 14 615 615 HOH HOH . E 4 HOH A 15 617 617 HOH HOH . E 4 HOH A 16 618 618 HOH HOH . E 4 HOH A 17 619 619 HOH HOH . E 4 HOH A 18 665 665 HOH HOH . E 4 HOH A 19 666 666 HOH HOH . E 4 HOH A 20 667 667 HOH HOH . E 4 HOH A 21 668 668 HOH HOH . E 4 HOH A 22 669 669 HOH HOH . E 4 HOH A 23 670 670 HOH HOH . E 4 HOH A 24 671 671 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O36 G3A . . . D 3 -25.919 17.486 -22.776 1 60.13 ? O36 G3A 502 A 1 HETATM 2 C C36 G3A . . . D 3 -25.083 17.308 -21.868 1 57.42 ? C36 G3A 502 A 1 HETATM 3 N N31 G3A . . . D 3 -24.595 16.083 -21.633 1 56.71 ? N31 G3A 502 A 1 HETATM 4 C C32 G3A . . . D 3 -23.689 15.879 -20.663 1 55.76 ? C32 G3A 502 A 1 HETATM 5 N N32 G3A . . . D 3 -23.204 14.632 -20.447 1 58.42 ? N32 G3A 502 A 1 HETATM 6 N N33 G3A . . . D 3 -23.242 16.905 -19.905 1 43.98 ? N33 G3A 502 A 1 HETATM 7 C C35 G3A . . . D 3 -24.648 18.381 -21.098 1 54 ? C35 G3A 502 A 1 HETATM 8 C C34 G3A . . . D 3 -23.714 18.155 -20.104 1 50.12 ? C34 G3A 502 A 1 HETATM 9 N N37 G3A . . . D 3 -24.943 19.693 -21.082 1 48.48 ? N37 G3A 502 A 1 HETATM 10 C C38 G3A . . . D 3 -24.207 20.261 -20.099 1 55.16 ? C38 G3A 502 A 1 HETATM 11 N N39 G3A . . . D 3 -23.458 19.318 -19.506 1 54.19 ? N39 G3A 502 A 1 HETATM 12 C C41 G3A . . . D 3 -22.491 19.485 -18.39 1 55.44 ? C41 G3A 502 A 1 HETATM 13 O O44 G3A . . . D 3 -23.136 19.715 -17.135 1 56.87 ? O44 G3A 502 A 1 HETATM 14 C C42 G3A . . . D 3 -21.583 20.681 -18.615 1 53.13 ? C42 G3A 502 A 1 HETATM 15 O O42 G3A . . . D 3 -20.416 20.361 -19.378 1 43.29 ? O42 G3A 502 A 1 HETATM 16 C C43 G3A . . . D 3 -21.213 21.112 -17.218 1 52.36 ? C43 G3A 502 A 1 HETATM 17 O O43 G3A . . . D 3 -19.996 20.477 -16.826 1 56.91 ? O43 G3A 502 A 1 HETATM 18 C C44 G3A . . . D 3 -22.368 20.638 -16.352 1 49.22 ? C44 G3A 502 A 1 HETATM 19 C C45 G3A . . . D 3 -23.27 21.779 -15.905 1 55.8 ? C45 G3A 502 A 1 HETATM 20 O O45 G3A . . . D 3 -23.553 22.698 -16.968 1 62.94 ? O45 G3A 502 A 1 HETATM 21 P PA G3A . . . D 3 -23.268 24.276 -16.771 1 56.96 ? PA G3A 502 A 1 HETATM 22 O O1A G3A . . . D 3 -23.99 24.778 -15.56 1 37.99 ? O1A G3A 502 A 1 HETATM 23 O O2A G3A . . . D 3 -23.564 24.977 -18.077 1 56.75 ? O2A G3A 502 A 1 HETATM 24 O O1 G3A . . . D 3 -21.671 24.193 -16.46 1 57.55 ? O1 G3A 502 A 1 HETATM 25 P PB G3A . . . D 3 -20.822 25.482 -16.039 1 50.87 ? PB G3A 502 A 1 HETATM 26 O O2B G3A . . . D 3 -21.818 26.608 -16.129 1 63.85 ? O2B G3A 502 A 1 HETATM 27 O O3B G3A . . . D 3 -20.05 25.243 -14.763 1 54.07 ? O3B G3A 502 A 1 HETATM 28 O O3A G3A . . . D 3 -19.772 25.664 -17.244 1 56.66 ? O3A G3A 502 A 1 HETATM 29 P PG G3A . . . D 3 -19.493 27.115 -17.921 1 50.17 ? PG G3A 502 A 1 HETATM 30 O O1G G3A . . . D 3 -19.742 28.205 -16.915 1 46.15 ? O1G G3A 502 A 1 HETATM 31 O O2G G3A . . . D 3 -18.144 26.979 -18.566 1 72.9 ? O2G G3A 502 A 1 HETATM 32 O O25 G3A . . . D 3 -20.587 27.255 -19.097 1 68.18 ? O25 G3A 502 A 1 HETATM 33 C C25 G3A . . . D 3 -21.201 25.979 -19.264 1 67.23 ? C25 G3A 502 A 1 HETATM 34 C C24 G3A . . . D 3 -21 25.238 -20.323 1 64.77 ? C24 G3A 502 A 1 HETATM 35 C C23 G3A . . . D 3 -21.572 23.871 -20.372 1 58.69 ? C23 G3A 502 A 1 HETATM 36 O O23 G3A . . . D 3 -22.99 23.838 -20.582 1 65.39 ? O23 G3A 502 A 1 HETATM 37 C C22 G3A . . . D 3 -20.711 23.289 -21.487 1 53.5 ? C22 G3A 502 A 1 HETATM 38 O O22 G3A . . . D 3 -21.534 22.75 -22.517 1 62.95 ? O22 G3A 502 A 1 HETATM 39 O O24 G3A . . . D 3 -20.198 25.642 -21.445 1 54.32 ? O24 G3A 502 A 1 HETATM 40 C C21 G3A . . . D 3 -19.824 24.404 -22.061 1 54.34 ? C21 G3A 502 A 1 HETATM 41 N N19 G3A . . . D 3 -18.374 24.17 -21.808 1 54.97 ? N19 G3A 502 A 1 HETATM 42 C C14 G3A . . . D 3 -17.589 23.296 -22.443 1 54.41 ? C14 G3A 502 A 1 HETATM 43 N N13 G3A . . . D 3 -17.796 22.401 -23.417 1 55.09 ? N13 G3A 502 A 1 HETATM 44 C C12 G3A . . . D 3 -16.726 21.535 -23.938 1 51.43 ? C12 G3A 502 A 1 HETATM 45 N N11 G3A . . . D 3 -15.398 21.723 -23.337 1 51.96 ? N11 G3A 502 A 1 HETATM 46 C C18 G3A . . . D 3 -17.627 24.834 -20.898 1 55.53 ? C18 G3A 502 A 1 HETATM 47 N N17 G3A . . . D 3 -16.342 24.406 -20.918 1 59.2 ? N17 G3A 502 A 1 HETATM 48 C C15 G3A . . . D 3 -16.246 23.449 -21.854 1 55.48 ? C15 G3A 502 A 1 HETATM 49 C C16 G3A . . . D 3 -15.147 22.602 -22.358 1 53.6 ? C16 G3A 502 A 1 HETATM 50 N N16 G3A . . . D 3 -13.904 22.728 -21.832 1 53.8 ? N16 G3A 502 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 50 #