data_2PYU # _model_server_result.job_id otOwnolA-8y_eyn1yk4CmQ _model_server_result.datetime_utc '2024-11-30 02:03:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":3036}' # _entry.id 2PYU # _exptl.entry_id 2PYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PYU _cell.length_a 77.941 _cell.length_b 77.941 _cell.length_c 81.073 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 40.5365 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 182 n n P O2P IMP sing 183 n n P O3P IMP sing 184 n n P O5' IMP sing 185 n n O2P HOP2 IMP sing 186 n n O3P HOP3 IMP sing 187 n n O5' C5' IMP sing 188 n n C5' C4' IMP sing 189 n n C5' "H5'1" IMP sing 190 n n C5' "H5'2" IMP sing 191 n n C4' O4' IMP sing 192 n n C4' C3' IMP sing 193 n n C4' H4' IMP sing 194 n n O4' C1' IMP sing 195 n n C3' O3' IMP sing 196 n n C3' C2' IMP sing 197 n n C3' H3' IMP sing 198 n n O3' HO3' IMP sing 199 n n C2' O2' IMP sing 200 n n C2' C1' IMP sing 201 n n C2' H2' IMP sing 202 n n O2' HO2' IMP sing 203 n n C1' N9 IMP sing 204 n n C1' H1' IMP sing 205 n n N9 C8 IMP sing 206 n y N9 C4 IMP sing 207 n y C8 N7 IMP doub 208 n y C8 H8 IMP sing 209 n n N7 C5 IMP sing 210 n y C5 C6 IMP sing 211 n n C5 C4 IMP doub 212 n y C6 O6 IMP doub 213 n n C6 N1 IMP sing 214 n n N1 C2 IMP sing 215 n n N1 HN1 IMP sing 216 n n C2 N3 IMP doub 217 n n C2 H2 IMP sing 218 n n N3 C4 IMP sing 219 n n # _atom_sites.entry_id 2PYU _atom_sites.fract_transf_matrix[1][1] 0.01283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 3036 3036 IMP IMP . C 3 EDO A 1 600 60 EDO EDO . D 4 HOH A 1 3037 1 HOH HOH . D 4 HOH A 2 3038 2 HOH HOH . D 4 HOH A 3 3039 3 HOH HOH . D 4 HOH A 4 3040 4 HOH HOH . D 4 HOH A 5 3041 5 HOH HOH . D 4 HOH A 6 3042 6 HOH HOH . D 4 HOH A 7 3043 7 HOH HOH . D 4 HOH A 8 3044 8 HOH HOH . D 4 HOH A 9 3045 9 HOH HOH . D 4 HOH A 10 3046 10 HOH HOH . D 4 HOH A 11 3047 11 HOH HOH . D 4 HOH A 12 3048 12 HOH HOH . D 4 HOH A 13 3049 13 HOH HOH . D 4 HOH A 14 3050 14 HOH HOH . D 4 HOH A 15 3051 15 HOH HOH . D 4 HOH A 16 3052 16 HOH HOH . D 4 HOH A 17 3053 17 HOH HOH . D 4 HOH A 18 3054 18 HOH HOH . D 4 HOH A 19 3055 19 HOH HOH . D 4 HOH A 20 3056 20 HOH HOH . D 4 HOH A 21 3057 21 HOH HOH . D 4 HOH A 22 3058 22 HOH HOH . D 4 HOH A 23 3059 23 HOH HOH . D 4 HOH A 24 3060 24 HOH HOH . D 4 HOH A 25 3061 25 HOH HOH . D 4 HOH A 26 3062 26 HOH HOH . D 4 HOH A 27 3063 27 HOH HOH . D 4 HOH A 28 3064 28 HOH HOH . D 4 HOH A 29 3065 29 HOH HOH . D 4 HOH A 30 3066 30 HOH HOH . D 4 HOH A 31 3067 31 HOH HOH . D 4 HOH A 32 3068 32 HOH HOH . D 4 HOH A 33 3069 33 HOH HOH . D 4 HOH A 34 3070 34 HOH HOH . D 4 HOH A 35 3071 35 HOH HOH . D 4 HOH A 36 3072 36 HOH HOH . D 4 HOH A 37 3073 37 HOH HOH . D 4 HOH A 38 3074 38 HOH HOH . D 4 HOH A 39 3075 39 HOH HOH . D 4 HOH A 40 3076 40 HOH HOH . D 4 HOH A 41 3077 41 HOH HOH . D 4 HOH A 42 3078 42 HOH HOH . D 4 HOH A 43 3079 43 HOH HOH . D 4 HOH A 44 3080 44 HOH HOH . D 4 HOH A 45 3081 45 HOH HOH . D 4 HOH A 46 3082 46 HOH HOH . D 4 HOH A 47 3083 48 HOH HOH . D 4 HOH A 48 3084 50 HOH HOH . D 4 HOH A 49 3085 51 HOH HOH . D 4 HOH A 50 3086 52 HOH HOH . D 4 HOH A 51 3087 53 HOH HOH . D 4 HOH A 52 3088 54 HOH HOH . D 4 HOH A 53 3089 55 HOH HOH . D 4 HOH A 54 3090 56 HOH HOH . D 4 HOH A 55 3091 57 HOH HOH . D 4 HOH A 56 3092 58 HOH HOH . D 4 HOH A 57 3093 59 HOH HOH . D 4 HOH A 58 3094 60 HOH HOH . D 4 HOH A 59 3095 61 HOH HOH . D 4 HOH A 60 3096 62 HOH HOH . D 4 HOH A 61 3097 63 HOH HOH . D 4 HOH A 62 3098 64 HOH HOH . D 4 HOH A 63 3099 65 HOH HOH . D 4 HOH A 64 3100 66 HOH HOH . D 4 HOH A 65 3101 67 HOH HOH . D 4 HOH A 66 3102 68 HOH HOH . D 4 HOH A 67 3103 69 HOH HOH . D 4 HOH A 68 3104 70 HOH HOH . D 4 HOH A 69 3105 71 HOH HOH . D 4 HOH A 70 3106 72 HOH HOH . D 4 HOH A 71 3107 73 HOH HOH . D 4 HOH A 72 3108 74 HOH HOH . D 4 HOH A 73 3109 75 HOH HOH . D 4 HOH A 74 3110 76 HOH HOH . D 4 HOH A 75 3111 77 HOH HOH . D 4 HOH A 76 3112 78 HOH HOH . D 4 HOH A 77 3113 79 HOH HOH . D 4 HOH A 78 3114 80 HOH HOH . D 4 HOH A 79 3115 81 HOH HOH . D 4 HOH A 80 3116 82 HOH HOH . D 4 HOH A 81 3117 83 HOH HOH . D 4 HOH A 82 3118 84 HOH HOH . D 4 HOH A 83 3119 85 HOH HOH . D 4 HOH A 84 3120 86 HOH HOH . D 4 HOH A 85 3121 87 HOH HOH . D 4 HOH A 86 3122 88 HOH HOH . D 4 HOH A 87 3123 89 HOH HOH . D 4 HOH A 88 3124 90 HOH HOH . D 4 HOH A 89 3125 91 HOH HOH . D 4 HOH A 90 3126 92 HOH HOH . D 4 HOH A 91 3127 93 HOH HOH . D 4 HOH A 92 3128 94 HOH HOH . D 4 HOH A 93 3129 95 HOH HOH . D 4 HOH A 94 3130 96 HOH HOH . D 4 HOH A 95 3131 97 HOH HOH . D 4 HOH A 96 3132 98 HOH HOH . D 4 HOH A 97 3133 99 HOH HOH . D 4 HOH A 98 3134 100 HOH HOH . D 4 HOH A 99 3135 101 HOH HOH . D 4 HOH A 100 3136 102 HOH HOH . D 4 HOH A 101 3137 103 HOH HOH . D 4 HOH A 102 3138 104 HOH HOH . D 4 HOH A 103 3139 105 HOH HOH . D 4 HOH A 104 3140 106 HOH HOH . D 4 HOH A 105 3141 107 HOH HOH . D 4 HOH A 106 3142 108 HOH HOH . D 4 HOH A 107 3143 109 HOH HOH . D 4 HOH A 108 3144 110 HOH HOH . D 4 HOH A 109 3145 111 HOH HOH . D 4 HOH A 110 3146 112 HOH HOH . D 4 HOH A 111 3147 113 HOH HOH . D 4 HOH A 112 3148 114 HOH HOH . D 4 HOH A 113 3149 115 HOH HOH . D 4 HOH A 114 3150 116 HOH HOH . D 4 HOH A 115 3151 117 HOH HOH . D 4 HOH A 116 3152 118 HOH HOH . D 4 HOH A 117 3153 119 HOH HOH . D 4 HOH A 118 3154 120 HOH HOH . D 4 HOH A 119 3155 121 HOH HOH . D 4 HOH A 120 3156 122 HOH HOH . D 4 HOH A 121 3157 123 HOH HOH . D 4 HOH A 122 3158 124 HOH HOH . D 4 HOH A 123 3159 125 HOH HOH . D 4 HOH A 124 3160 126 HOH HOH . D 4 HOH A 125 3161 127 HOH HOH . D 4 HOH A 126 3162 128 HOH HOH . D 4 HOH A 127 3163 129 HOH HOH . D 4 HOH A 128 3164 130 HOH HOH . D 4 HOH A 129 3165 131 HOH HOH . D 4 HOH A 130 3166 132 HOH HOH . D 4 HOH A 131 3167 133 HOH HOH . D 4 HOH A 132 3168 134 HOH HOH . D 4 HOH A 133 3169 135 HOH HOH . D 4 HOH A 134 3170 136 HOH HOH . D 4 HOH A 135 3171 137 HOH HOH . D 4 HOH A 136 3172 138 HOH HOH . D 4 HOH A 137 3173 139 HOH HOH . D 4 HOH A 138 3174 140 HOH HOH . D 4 HOH A 139 3175 141 HOH HOH . D 4 HOH A 140 3176 142 HOH HOH . D 4 HOH A 141 3177 143 HOH HOH . D 4 HOH A 142 3178 144 HOH HOH . D 4 HOH A 143 3179 145 HOH HOH . D 4 HOH A 144 3180 146 HOH HOH . D 4 HOH A 145 3181 147 HOH HOH . D 4 HOH A 146 3182 148 HOH HOH . D 4 HOH A 147 3183 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . A . B 2 6.28 -15.493 4.403 0 36.05 ? P IMP 3036 A 1 HETATM 2 P P IMP . B . B 2 6.83 -16.11 4.373 1 69.73 ? P IMP 3036 A 1 HETATM 3 O O1P IMP . A . B 2 5.407 -14.698 5.29 0 29.4 ? O1P IMP 3036 A 1 HETATM 4 O O1P IMP . B . B 2 5.45 -15.486 4.335 1 62.49 ? O1P IMP 3036 A 1 HETATM 5 O O2P IMP . A . B 2 7.131 -16.579 4.97 0 32.85 ? O2P IMP 3036 A 1 HETATM 6 O O2P IMP . B . B 2 7.346 -16.629 5.734 1 65.77 ? O2P IMP 3036 A 1 HETATM 7 O O3P IMP . A . B 2 5.673 -15.855 3.104 0 32.28 ? O3P IMP 3036 A 1 HETATM 8 O O3P IMP . B . B 2 7.295 -17.052 3.252 1 68.64 ? O3P IMP 3036 A 1 HETATM 9 O O5' IMP . A . B 2 7.446 -14.487 4.051 0 30.38 ? O5' IMP 3036 A 1 HETATM 10 O O5' IMP . B . B 2 7.476 -14.663 4.041 1 61.07 ? O5' IMP 3036 A 1 HETATM 11 C C5' IMP . A . B 2 8.686 -15.036 3.782 0 20.26 ? C5' IMP 3036 A 1 HETATM 12 C C5' IMP . B . B 2 8.854 -14.64 3.917 1 49.35 ? C5' IMP 3036 A 1 HETATM 13 C C4' IMP . A . B 2 9.207 -14.146 2.71 0 19.9 ? C4' IMP 3036 A 1 HETATM 14 C C4' IMP . B . B 2 9.215 -13.888 2.695 1 43.81 ? C4' IMP 3036 A 1 HETATM 15 O O4' IMP . A . B 2 10.598 -14.104 2.715 0 19.21 ? O4' IMP 3036 A 1 HETATM 16 O O4' IMP . B . B 2 10.633 -14.002 2.72 1 40.99 ? O4' IMP 3036 A 1 HETATM 17 C C3' IMP . A . B 2 8.786 -14.702 1.376 0 21.75 ? C3' IMP 3036 A 1 HETATM 18 C C3' IMP . B . B 2 8.761 -14.595 1.425 1 44.83 ? C3' IMP 3036 A 1 HETATM 19 O O3' IMP . A . B 2 7.694 -13.94 0.964 0 25.73 ? O3' IMP 3036 A 1 HETATM 20 O O3' IMP . B . B 2 7.602 -13.932 0.93 1 46.41 ? O3' IMP 3036 A 1 HETATM 21 C C2' IMP . A . B 2 9.951 -14.388 0.485 0 21.63 ? C2' IMP 3036 A 1 HETATM 22 C C2' IMP . B . B 2 9.936 -14.335 0.51 1 42.75 ? C2' IMP 3036 A 1 HETATM 23 O O2' IMP . A . B 2 9.767 -13.025 0.09 0 18.79 ? O2' IMP 3036 A 1 HETATM 24 O O2' IMP . B . B 2 9.739 -12.948 0.126 1 40.21 ? O2' IMP 3036 A 1 HETATM 25 C C1' IMP . A . B 2 11.106 -14.49 1.464 0 12.06 ? C1' IMP 3036 A 1 HETATM 26 C C1' IMP . B . B 2 11.163 -14.452 1.46 1 32.12 ? C1' IMP 3036 A 1 HETATM 27 N N9 IMP . A . B 2 11.584 -15.87 1.603 0 10.31 ? N9 IMP 3036 A 1 HETATM 28 N N9 IMP . B . B 2 11.595 -15.862 1.635 1 29.41 ? N9 IMP 3036 A 1 HETATM 29 C C8 IMP . A . B 2 11.523 -16.639 2.674 0 8.22 ? C8 IMP 3036 A 1 HETATM 30 C C8 IMP . B . B 2 11.475 -16.659 2.734 1 27.4 ? C8 IMP 3036 A 1 HETATM 31 N N7 IMP . A . B 2 12.041 -17.824 2.429 0 9.66 ? N7 IMP 3036 A 1 HETATM 32 N N7 IMP . B . B 2 11.982 -17.881 2.486 1 27.58 ? N7 IMP 3036 A 1 HETATM 33 C C5 IMP . A . B 2 12.451 -17.806 1.162 0 11.68 ? C5 IMP 3036 A 1 HETATM 34 C C5 IMP . B . B 2 12.436 -17.854 1.176 1 30.64 ? C5 IMP 3036 A 1 HETATM 35 C C6 IMP . A . B 2 13.079 -18.702 0.309 0 11.84 ? C6 IMP 3036 A 1 HETATM 36 C C6 IMP . B . B 2 13.067 -18.77 0.299 1 30.16 ? C6 IMP 3036 A 1 HETATM 37 O O6 IMP . A . B 2 13.41 -19.835 0.62 0 12.92 ? O6 IMP 3036 A 1 HETATM 38 O O6 IMP . B . B 2 13.372 -19.974 0.602 1 31.32 ? O6 IMP 3036 A 1 HETATM 39 N N1 IMP . A . B 2 13.353 -18.318 -0.903 0 7.61 ? N1 IMP 3036 A 1 HETATM 40 N N1 IMP . B . B 2 13.383 -18.344 -0.947 1 27.02 ? N1 IMP 3036 A 1 HETATM 41 C C2 IMP . A . B 2 13.047 -17.124 -1.343 0 8.47 ? C2 IMP 3036 A 1 HETATM 42 C C2 IMP . B . B 2 13.103 -17.12 -1.415 1 28.1 ? C2 IMP 3036 A 1 HETATM 43 N N3 IMP . A . B 2 12.452 -16.232 -0.595 0 11.15 ? N3 IMP 3036 A 1 HETATM 44 N N3 IMP . B . B 2 12.544 -16.16 -0.632 1 28.08 ? N3 IMP 3036 A 1 HETATM 45 C C4 IMP . A . B 2 12.152 -16.558 0.661 0 13.56 ? C4 IMP 3036 A 1 HETATM 46 C C4 IMP . B . B 2 12.171 -16.57 0.654 1 31.68 ? C4 IMP 3036 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 46 #