data_2PYU # _model_server_result.job_id lk72i0jcLHFgxfCtgsWUOA _model_server_result.datetime_utc '2024-11-26 16:29:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 2PYU # _exptl.entry_id 2PYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PYU _cell.length_a 77.941 _cell.length_b 77.941 _cell.length_c 81.073 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 40.5365 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 2PYU _atom_sites.fract_transf_matrix[1][1] 0.01283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 3036 3036 IMP IMP . C 3 EDO A 1 600 60 EDO EDO . D 4 HOH A 1 3037 1 HOH HOH . D 4 HOH A 2 3038 2 HOH HOH . D 4 HOH A 3 3039 3 HOH HOH . D 4 HOH A 4 3040 4 HOH HOH . D 4 HOH A 5 3041 5 HOH HOH . D 4 HOH A 6 3042 6 HOH HOH . D 4 HOH A 7 3043 7 HOH HOH . D 4 HOH A 8 3044 8 HOH HOH . D 4 HOH A 9 3045 9 HOH HOH . D 4 HOH A 10 3046 10 HOH HOH . D 4 HOH A 11 3047 11 HOH HOH . D 4 HOH A 12 3048 12 HOH HOH . D 4 HOH A 13 3049 13 HOH HOH . D 4 HOH A 14 3050 14 HOH HOH . D 4 HOH A 15 3051 15 HOH HOH . D 4 HOH A 16 3052 16 HOH HOH . D 4 HOH A 17 3053 17 HOH HOH . D 4 HOH A 18 3054 18 HOH HOH . D 4 HOH A 19 3055 19 HOH HOH . D 4 HOH A 20 3056 20 HOH HOH . D 4 HOH A 21 3057 21 HOH HOH . D 4 HOH A 22 3058 22 HOH HOH . D 4 HOH A 23 3059 23 HOH HOH . D 4 HOH A 24 3060 24 HOH HOH . D 4 HOH A 25 3061 25 HOH HOH . D 4 HOH A 26 3062 26 HOH HOH . D 4 HOH A 27 3063 27 HOH HOH . D 4 HOH A 28 3064 28 HOH HOH . D 4 HOH A 29 3065 29 HOH HOH . D 4 HOH A 30 3066 30 HOH HOH . D 4 HOH A 31 3067 31 HOH HOH . D 4 HOH A 32 3068 32 HOH HOH . D 4 HOH A 33 3069 33 HOH HOH . D 4 HOH A 34 3070 34 HOH HOH . D 4 HOH A 35 3071 35 HOH HOH . D 4 HOH A 36 3072 36 HOH HOH . D 4 HOH A 37 3073 37 HOH HOH . D 4 HOH A 38 3074 38 HOH HOH . D 4 HOH A 39 3075 39 HOH HOH . D 4 HOH A 40 3076 40 HOH HOH . D 4 HOH A 41 3077 41 HOH HOH . D 4 HOH A 42 3078 42 HOH HOH . D 4 HOH A 43 3079 43 HOH HOH . D 4 HOH A 44 3080 44 HOH HOH . D 4 HOH A 45 3081 45 HOH HOH . D 4 HOH A 46 3082 46 HOH HOH . D 4 HOH A 47 3083 48 HOH HOH . D 4 HOH A 48 3084 50 HOH HOH . D 4 HOH A 49 3085 51 HOH HOH . D 4 HOH A 50 3086 52 HOH HOH . D 4 HOH A 51 3087 53 HOH HOH . D 4 HOH A 52 3088 54 HOH HOH . D 4 HOH A 53 3089 55 HOH HOH . D 4 HOH A 54 3090 56 HOH HOH . D 4 HOH A 55 3091 57 HOH HOH . D 4 HOH A 56 3092 58 HOH HOH . D 4 HOH A 57 3093 59 HOH HOH . D 4 HOH A 58 3094 60 HOH HOH . D 4 HOH A 59 3095 61 HOH HOH . D 4 HOH A 60 3096 62 HOH HOH . D 4 HOH A 61 3097 63 HOH HOH . D 4 HOH A 62 3098 64 HOH HOH . D 4 HOH A 63 3099 65 HOH HOH . D 4 HOH A 64 3100 66 HOH HOH . D 4 HOH A 65 3101 67 HOH HOH . D 4 HOH A 66 3102 68 HOH HOH . D 4 HOH A 67 3103 69 HOH HOH . D 4 HOH A 68 3104 70 HOH HOH . D 4 HOH A 69 3105 71 HOH HOH . D 4 HOH A 70 3106 72 HOH HOH . D 4 HOH A 71 3107 73 HOH HOH . D 4 HOH A 72 3108 74 HOH HOH . D 4 HOH A 73 3109 75 HOH HOH . D 4 HOH A 74 3110 76 HOH HOH . D 4 HOH A 75 3111 77 HOH HOH . D 4 HOH A 76 3112 78 HOH HOH . D 4 HOH A 77 3113 79 HOH HOH . D 4 HOH A 78 3114 80 HOH HOH . D 4 HOH A 79 3115 81 HOH HOH . D 4 HOH A 80 3116 82 HOH HOH . D 4 HOH A 81 3117 83 HOH HOH . D 4 HOH A 82 3118 84 HOH HOH . D 4 HOH A 83 3119 85 HOH HOH . D 4 HOH A 84 3120 86 HOH HOH . D 4 HOH A 85 3121 87 HOH HOH . D 4 HOH A 86 3122 88 HOH HOH . D 4 HOH A 87 3123 89 HOH HOH . D 4 HOH A 88 3124 90 HOH HOH . D 4 HOH A 89 3125 91 HOH HOH . D 4 HOH A 90 3126 92 HOH HOH . D 4 HOH A 91 3127 93 HOH HOH . D 4 HOH A 92 3128 94 HOH HOH . D 4 HOH A 93 3129 95 HOH HOH . D 4 HOH A 94 3130 96 HOH HOH . D 4 HOH A 95 3131 97 HOH HOH . D 4 HOH A 96 3132 98 HOH HOH . D 4 HOH A 97 3133 99 HOH HOH . D 4 HOH A 98 3134 100 HOH HOH . D 4 HOH A 99 3135 101 HOH HOH . D 4 HOH A 100 3136 102 HOH HOH . D 4 HOH A 101 3137 103 HOH HOH . D 4 HOH A 102 3138 104 HOH HOH . D 4 HOH A 103 3139 105 HOH HOH . D 4 HOH A 104 3140 106 HOH HOH . D 4 HOH A 105 3141 107 HOH HOH . D 4 HOH A 106 3142 108 HOH HOH . D 4 HOH A 107 3143 109 HOH HOH . D 4 HOH A 108 3144 110 HOH HOH . D 4 HOH A 109 3145 111 HOH HOH . D 4 HOH A 110 3146 112 HOH HOH . D 4 HOH A 111 3147 113 HOH HOH . D 4 HOH A 112 3148 114 HOH HOH . D 4 HOH A 113 3149 115 HOH HOH . D 4 HOH A 114 3150 116 HOH HOH . D 4 HOH A 115 3151 117 HOH HOH . D 4 HOH A 116 3152 118 HOH HOH . D 4 HOH A 117 3153 119 HOH HOH . D 4 HOH A 118 3154 120 HOH HOH . D 4 HOH A 119 3155 121 HOH HOH . D 4 HOH A 120 3156 122 HOH HOH . D 4 HOH A 121 3157 123 HOH HOH . D 4 HOH A 122 3158 124 HOH HOH . D 4 HOH A 123 3159 125 HOH HOH . D 4 HOH A 124 3160 126 HOH HOH . D 4 HOH A 125 3161 127 HOH HOH . D 4 HOH A 126 3162 128 HOH HOH . D 4 HOH A 127 3163 129 HOH HOH . D 4 HOH A 128 3164 130 HOH HOH . D 4 HOH A 129 3165 131 HOH HOH . D 4 HOH A 130 3166 132 HOH HOH . D 4 HOH A 131 3167 133 HOH HOH . D 4 HOH A 132 3168 134 HOH HOH . D 4 HOH A 133 3169 135 HOH HOH . D 4 HOH A 134 3170 136 HOH HOH . D 4 HOH A 135 3171 137 HOH HOH . D 4 HOH A 136 3172 138 HOH HOH . D 4 HOH A 137 3173 139 HOH HOH . D 4 HOH A 138 3174 140 HOH HOH . D 4 HOH A 139 3175 141 HOH HOH . D 4 HOH A 140 3176 142 HOH HOH . D 4 HOH A 141 3177 143 HOH HOH . D 4 HOH A 142 3178 144 HOH HOH . D 4 HOH A 143 3179 145 HOH HOH . D 4 HOH A 144 3180 146 HOH HOH . D 4 HOH A 145 3181 147 HOH HOH . D 4 HOH A 146 3182 148 HOH HOH . D 4 HOH A 147 3183 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 14.341 -5.02 7.175 1 38.02 ? C1 EDO 600 A 1 HETATM 2 O O1 EDO . . . C 3 13.631 -5.43 8.367 1 26.37 ? O1 EDO 600 A 1 HETATM 3 C C2 EDO . . . C 3 14.647 -3.558 6.781 1 30.7 ? C2 EDO 600 A 1 HETATM 4 O O2 EDO . . . C 3 15.85 -3.116 7.467 1 39.52 ? O2 EDO 600 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #