data_2PZG # _model_server_result.job_id 4Aqj7hhwWr1ElpeJIWyNMA _model_server_result.datetime_utc '2024-11-26 12:03:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pzg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":7}' # _entry.id 2PZG # _exptl.entry_id 2PZG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PZG _cell.length_a 62.417 _cell.length_b 81.498 _cell.length_c 99.304 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PZG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 31 A GLY 404 1_555 A N GLY 32 A GLY 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 B C GLY 31 B GLY 404 1_555 B N GLY 32 B GLY 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 178 n n C1 C2 GOL sing 179 n n C1 H11 GOL sing 180 n n C1 H12 GOL sing 181 n n O1 HO1 GOL sing 182 n n C2 O2 GOL sing 183 n n C2 C3 GOL sing 184 n n C2 H2 GOL sing 185 n n O2 HO2 GOL sing 186 n n C3 O3 GOL sing 187 n n C3 H31 GOL sing 188 n n C3 H32 GOL sing 189 n n O3 HO3 GOL sing 190 n n # _atom_sites.entry_id 2PZG _atom_sites.fract_transf_matrix[1][1] 0.016021 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 3 3 MG MG . D 3 ATP A 1 1 1 ATP ATP . E 4 GOL A 1 6 6 GOL GOL . F 2 MG B 1 4 4 MG MG . G 3 ATP B 1 2 2 ATP ATP . H 4 GOL B 1 5 5 GOL GOL . I 4 GOL B 1 7 7 GOL GOL . J 5 HOH A 1 647 8 HOH HOH . J 5 HOH A 2 648 9 HOH HOH . J 5 HOH A 3 649 14 HOH HOH . J 5 HOH A 4 650 17 HOH HOH . J 5 HOH A 5 651 18 HOH HOH . J 5 HOH A 6 652 19 HOH HOH . J 5 HOH A 7 653 20 HOH HOH . J 5 HOH A 8 654 22 HOH HOH . J 5 HOH A 9 655 24 HOH HOH . J 5 HOH A 10 656 27 HOH HOH . J 5 HOH A 11 657 28 HOH HOH . J 5 HOH A 12 658 29 HOH HOH . J 5 HOH A 13 659 30 HOH HOH . J 5 HOH A 14 660 32 HOH HOH . J 5 HOH A 15 661 33 HOH HOH . J 5 HOH A 16 662 36 HOH HOH . J 5 HOH A 17 663 41 HOH HOH . J 5 HOH A 18 664 43 HOH HOH . J 5 HOH A 19 665 47 HOH HOH . J 5 HOH A 20 666 48 HOH HOH . J 5 HOH A 21 667 55 HOH HOH . J 5 HOH A 22 668 61 HOH HOH . J 5 HOH A 23 669 65 HOH HOH . J 5 HOH A 24 670 66 HOH HOH . J 5 HOH A 25 671 68 HOH HOH . J 5 HOH A 26 672 70 HOH HOH . J 5 HOH A 27 673 72 HOH HOH . J 5 HOH A 28 674 73 HOH HOH . J 5 HOH A 29 675 74 HOH HOH . J 5 HOH A 30 676 75 HOH HOH . J 5 HOH A 31 677 76 HOH HOH . J 5 HOH A 32 678 80 HOH HOH . J 5 HOH A 33 679 83 HOH HOH . J 5 HOH A 34 680 84 HOH HOH . J 5 HOH A 35 681 86 HOH HOH . J 5 HOH A 36 682 89 HOH HOH . J 5 HOH A 37 683 90 HOH HOH . J 5 HOH A 38 684 91 HOH HOH . J 5 HOH A 39 685 93 HOH HOH . J 5 HOH A 40 686 94 HOH HOH . J 5 HOH A 41 687 95 HOH HOH . J 5 HOH A 42 688 96 HOH HOH . J 5 HOH A 43 689 97 HOH HOH . J 5 HOH A 44 690 98 HOH HOH . J 5 HOH A 45 691 102 HOH HOH . J 5 HOH A 46 692 103 HOH HOH . J 5 HOH A 47 693 106 HOH HOH . J 5 HOH A 48 694 108 HOH HOH . J 5 HOH A 49 695 114 HOH HOH . J 5 HOH A 50 696 115 HOH HOH . J 5 HOH A 51 697 120 HOH HOH . J 5 HOH A 52 698 123 HOH HOH . J 5 HOH A 53 699 124 HOH HOH . J 5 HOH A 54 700 127 HOH HOH . J 5 HOH A 55 701 128 HOH HOH . J 5 HOH A 56 702 130 HOH HOH . J 5 HOH A 57 703 131 HOH HOH . J 5 HOH A 58 704 132 HOH HOH . J 5 HOH A 59 705 133 HOH HOH . J 5 HOH A 60 706 134 HOH HOH . J 5 HOH A 61 707 136 HOH HOH . J 5 HOH A 62 708 141 HOH HOH . J 5 HOH A 63 709 142 HOH HOH . J 5 HOH A 64 710 145 HOH HOH . J 5 HOH A 65 711 149 HOH HOH . J 5 HOH A 66 712 150 HOH HOH . J 5 HOH A 67 713 151 HOH HOH . J 5 HOH A 68 714 152 HOH HOH . J 5 HOH A 69 715 154 HOH HOH . J 5 HOH A 70 716 157 HOH HOH . J 5 HOH A 71 717 159 HOH HOH . J 5 HOH A 72 718 160 HOH HOH . J 5 HOH A 73 719 161 HOH HOH . J 5 HOH A 74 720 162 HOH HOH . J 5 HOH A 75 721 164 HOH HOH . J 5 HOH A 76 722 170 HOH HOH . J 5 HOH A 77 723 171 HOH HOH . J 5 HOH A 78 724 172 HOH HOH . J 5 HOH A 79 725 173 HOH HOH . J 5 HOH A 80 726 174 HOH HOH . J 5 HOH A 81 727 177 HOH HOH . J 5 HOH A 82 728 179 HOH HOH . J 5 HOH A 83 729 181 HOH HOH . J 5 HOH A 84 730 185 HOH HOH . J 5 HOH A 85 731 188 HOH HOH . J 5 HOH A 86 732 189 HOH HOH . J 5 HOH A 87 733 190 HOH HOH . J 5 HOH A 88 734 193 HOH HOH . J 5 HOH A 89 735 196 HOH HOH . J 5 HOH A 90 736 201 HOH HOH . J 5 HOH A 91 737 202 HOH HOH . J 5 HOH A 92 738 205 HOH HOH . J 5 HOH A 93 739 206 HOH HOH . J 5 HOH A 94 740 207 HOH HOH . J 5 HOH A 95 741 209 HOH HOH . J 5 HOH A 96 742 210 HOH HOH . J 5 HOH A 97 743 211 HOH HOH . J 5 HOH A 98 744 213 HOH HOH . J 5 HOH A 99 745 214 HOH HOH . J 5 HOH A 100 746 217 HOH HOH . J 5 HOH A 101 747 219 HOH HOH . J 5 HOH A 102 748 220 HOH HOH . J 5 HOH A 103 749 223 HOH HOH . J 5 HOH A 104 750 224 HOH HOH . J 5 HOH A 105 751 226 HOH HOH . J 5 HOH A 106 752 227 HOH HOH . J 5 HOH A 107 753 230 HOH HOH . J 5 HOH A 108 754 232 HOH HOH . J 5 HOH A 109 755 234 HOH HOH . J 5 HOH A 110 756 236 HOH HOH . J 5 HOH A 111 757 240 HOH HOH . J 5 HOH A 112 758 242 HOH HOH . J 5 HOH A 113 759 243 HOH HOH . J 5 HOH A 114 760 248 HOH HOH . J 5 HOH A 115 761 251 HOH HOH . J 5 HOH A 116 762 253 HOH HOH . J 5 HOH A 117 763 254 HOH HOH . J 5 HOH A 118 764 255 HOH HOH . J 5 HOH A 119 765 256 HOH HOH . K 5 HOH B 1 647 10 HOH HOH . K 5 HOH B 2 648 11 HOH HOH . K 5 HOH B 3 649 12 HOH HOH . K 5 HOH B 4 650 13 HOH HOH . K 5 HOH B 5 651 15 HOH HOH . K 5 HOH B 6 652 16 HOH HOH . K 5 HOH B 7 653 21 HOH HOH . K 5 HOH B 8 654 23 HOH HOH . K 5 HOH B 9 655 25 HOH HOH . K 5 HOH B 10 656 26 HOH HOH . K 5 HOH B 11 657 31 HOH HOH . K 5 HOH B 12 658 34 HOH HOH . K 5 HOH B 13 659 35 HOH HOH . K 5 HOH B 14 660 37 HOH HOH . K 5 HOH B 15 661 38 HOH HOH . K 5 HOH B 16 662 39 HOH HOH . K 5 HOH B 17 663 40 HOH HOH . K 5 HOH B 18 664 42 HOH HOH . K 5 HOH B 19 665 44 HOH HOH . K 5 HOH B 20 666 45 HOH HOH . K 5 HOH B 21 667 46 HOH HOH . K 5 HOH B 22 668 49 HOH HOH . K 5 HOH B 23 669 50 HOH HOH . K 5 HOH B 24 670 51 HOH HOH . K 5 HOH B 25 671 52 HOH HOH . K 5 HOH B 26 672 53 HOH HOH . K 5 HOH B 27 673 54 HOH HOH . K 5 HOH B 28 674 56 HOH HOH . K 5 HOH B 29 675 57 HOH HOH . K 5 HOH B 30 676 58 HOH HOH . K 5 HOH B 31 677 59 HOH HOH . K 5 HOH B 32 678 60 HOH HOH . K 5 HOH B 33 679 62 HOH HOH . K 5 HOH B 34 680 63 HOH HOH . K 5 HOH B 35 681 64 HOH HOH . K 5 HOH B 36 682 67 HOH HOH . K 5 HOH B 37 683 69 HOH HOH . K 5 HOH B 38 684 71 HOH HOH . K 5 HOH B 39 685 77 HOH HOH . K 5 HOH B 40 686 78 HOH HOH . K 5 HOH B 41 687 79 HOH HOH . K 5 HOH B 42 688 81 HOH HOH . K 5 HOH B 43 689 82 HOH HOH . K 5 HOH B 44 690 85 HOH HOH . K 5 HOH B 45 691 87 HOH HOH . K 5 HOH B 46 692 88 HOH HOH . K 5 HOH B 47 693 92 HOH HOH . K 5 HOH B 48 694 99 HOH HOH . K 5 HOH B 49 695 100 HOH HOH . K 5 HOH B 50 696 101 HOH HOH . K 5 HOH B 51 697 104 HOH HOH . K 5 HOH B 52 698 105 HOH HOH . K 5 HOH B 53 699 107 HOH HOH . K 5 HOH B 54 700 109 HOH HOH . K 5 HOH B 55 701 110 HOH HOH . K 5 HOH B 56 702 111 HOH HOH . K 5 HOH B 57 703 112 HOH HOH . K 5 HOH B 58 704 113 HOH HOH . K 5 HOH B 59 705 116 HOH HOH . K 5 HOH B 60 706 117 HOH HOH . K 5 HOH B 61 707 118 HOH HOH . K 5 HOH B 62 708 119 HOH HOH . K 5 HOH B 63 709 121 HOH HOH . K 5 HOH B 64 710 122 HOH HOH . K 5 HOH B 65 711 125 HOH HOH . K 5 HOH B 66 712 126 HOH HOH . K 5 HOH B 67 713 129 HOH HOH . K 5 HOH B 68 714 135 HOH HOH . K 5 HOH B 69 715 137 HOH HOH . K 5 HOH B 70 716 138 HOH HOH . K 5 HOH B 71 717 139 HOH HOH . K 5 HOH B 72 718 140 HOH HOH . K 5 HOH B 73 719 143 HOH HOH . K 5 HOH B 74 720 144 HOH HOH . K 5 HOH B 75 721 146 HOH HOH . K 5 HOH B 76 722 147 HOH HOH . K 5 HOH B 77 723 148 HOH HOH . K 5 HOH B 78 724 153 HOH HOH . K 5 HOH B 79 725 155 HOH HOH . K 5 HOH B 80 726 156 HOH HOH . K 5 HOH B 81 727 158 HOH HOH . K 5 HOH B 82 728 163 HOH HOH . K 5 HOH B 83 729 165 HOH HOH . K 5 HOH B 84 730 166 HOH HOH . K 5 HOH B 85 731 167 HOH HOH . K 5 HOH B 86 732 168 HOH HOH . K 5 HOH B 87 733 169 HOH HOH . K 5 HOH B 88 734 175 HOH HOH . K 5 HOH B 89 735 176 HOH HOH . K 5 HOH B 90 736 178 HOH HOH . K 5 HOH B 91 737 180 HOH HOH . K 5 HOH B 92 738 182 HOH HOH . K 5 HOH B 93 739 183 HOH HOH . K 5 HOH B 94 740 184 HOH HOH . K 5 HOH B 95 741 186 HOH HOH . K 5 HOH B 96 742 187 HOH HOH . K 5 HOH B 97 743 191 HOH HOH . K 5 HOH B 98 744 192 HOH HOH . K 5 HOH B 99 745 194 HOH HOH . K 5 HOH B 100 746 195 HOH HOH . K 5 HOH B 101 747 197 HOH HOH . K 5 HOH B 102 748 198 HOH HOH . K 5 HOH B 103 749 199 HOH HOH . K 5 HOH B 104 750 200 HOH HOH . K 5 HOH B 105 751 203 HOH HOH . K 5 HOH B 106 752 204 HOH HOH . K 5 HOH B 107 753 208 HOH HOH . K 5 HOH B 108 754 212 HOH HOH . K 5 HOH B 109 755 215 HOH HOH . K 5 HOH B 110 756 216 HOH HOH . K 5 HOH B 111 757 218 HOH HOH . K 5 HOH B 112 758 221 HOH HOH . K 5 HOH B 113 759 222 HOH HOH . K 5 HOH B 114 760 225 HOH HOH . K 5 HOH B 115 761 228 HOH HOH . K 5 HOH B 116 762 229 HOH HOH . K 5 HOH B 117 763 231 HOH HOH . K 5 HOH B 118 764 233 HOH HOH . K 5 HOH B 119 765 235 HOH HOH . K 5 HOH B 120 766 237 HOH HOH . K 5 HOH B 121 767 238 HOH HOH . K 5 HOH B 122 768 239 HOH HOH . K 5 HOH B 123 769 241 HOH HOH . K 5 HOH B 124 770 244 HOH HOH . K 5 HOH B 125 771 245 HOH HOH . K 5 HOH B 126 772 246 HOH HOH . K 5 HOH B 127 773 247 HOH HOH . K 5 HOH B 128 774 249 HOH HOH . K 5 HOH B 129 775 250 HOH HOH . K 5 HOH B 130 776 252 HOH HOH . K 5 HOH B 131 777 257 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 25.665 40.876 -2.843 1 55.81 ? C1 GOL 7 B 1 HETATM 2 O O1 GOL . . . I 4 26.592 41.924 -2.686 1 55.64 ? O1 GOL 7 B 1 HETATM 3 C C2 GOL . . . I 4 25.225 40.788 -4.298 1 54.06 ? C2 GOL 7 B 1 HETATM 4 O O2 GOL . . . I 4 24.173 41.712 -4.51 1 54.43 ? O2 GOL 7 B 1 HETATM 5 C C3 GOL . . . I 4 24.762 39.362 -4.594 1 52.99 ? C3 GOL 7 B 1 HETATM 6 O O3 GOL . . . I 4 25.462 38.804 -5.688 1 47.84 ? O3 GOL 7 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 550 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #