data_2PZR # _model_server_result.job_id 9KFZAE99s2aX9ZsjFYk7jQ _model_server_result.datetime_utc '2024-12-04 16:40:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pzr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":803}' # _entry.id 2PZR # _exptl.entry_id 2PZR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PZR _cell.length_a 106.137 _cell.length_b 116.642 _cell.length_c 63.636 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PZR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C11 H18 N5 O12 P3' _chem_comp.formula_weight 505.208 _chem_comp.id ACP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ACP doub 1 n n PG O2G ACP sing 2 n n PG O3G ACP sing 3 n n PG C3B ACP sing 4 n n O2G HOG2 ACP sing 5 n n O3G HOG3 ACP sing 6 n n PB O1B ACP doub 7 n n PB O2B ACP sing 8 n n PB C3B ACP sing 9 n n PB O3A ACP sing 10 n n O2B HOB2 ACP sing 11 n n C3B H3B1 ACP sing 12 n n C3B H3B2 ACP sing 13 n n PA O1A ACP doub 14 n n PA O2A ACP sing 15 n n PA O3A ACP sing 16 n n PA O5' ACP sing 17 n n O2A HOA2 ACP sing 18 n n O5' C5' ACP sing 19 n n C5' C4' ACP sing 20 n n C5' "H5'1" ACP sing 21 n n C5' "H5'2" ACP sing 22 n n C4' O4' ACP sing 23 n n C4' C3' ACP sing 24 n n C4' H4' ACP sing 25 n n O4' C1' ACP sing 26 n n C3' O3' ACP sing 27 n n C3' C2' ACP sing 28 n n C3' H3' ACP sing 29 n n O3' HO3' ACP sing 30 n n C2' O2' ACP sing 31 n n C2' C1' ACP sing 32 n n C2' H2' ACP sing 33 n n O2' HO2' ACP sing 34 n n C1' N9 ACP sing 35 n n C1' H1' ACP sing 36 n n N9 C8 ACP sing 37 n y N9 C4 ACP sing 38 n y C8 N7 ACP doub 39 n y C8 H8 ACP sing 40 n n N7 C5 ACP sing 41 n y C5 C6 ACP sing 42 n y C5 C4 ACP doub 43 n y C6 N6 ACP sing 44 n n C6 N1 ACP doub 45 n y N6 HN61 ACP sing 46 n n N6 HN62 ACP sing 47 n n N1 C2 ACP sing 48 n y C2 N3 ACP doub 49 n y C2 H2 ACP sing 50 n n N3 C4 ACP sing 51 n y # _atom_sites.entry_id 2PZR _atom_sites.fract_transf_matrix[1][1] 0.009422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015714 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 801 303 SO4 SO4 . D 2 SO4 A 1 802 304 SO4 SO4 . E 3 ACP A 1 803 300 ACP PCP . F 2 SO4 B 1 801 1303 SO4 SO4 . G 2 SO4 B 1 802 1304 SO4 SO4 . H 3 ACP B 1 803 1300 ACP PCP . I 4 HOH A 1 901 5 HOH HOH . I 4 HOH A 2 902 6 HOH HOH . I 4 HOH A 3 903 7 HOH HOH . I 4 HOH A 4 904 10 HOH HOH . I 4 HOH A 5 905 12 HOH HOH . I 4 HOH A 6 906 13 HOH HOH . I 4 HOH A 7 907 14 HOH HOH . I 4 HOH A 8 908 16 HOH HOH . I 4 HOH A 9 909 18 HOH HOH . I 4 HOH A 10 910 19 HOH HOH . I 4 HOH A 11 911 21 HOH HOH . I 4 HOH A 12 912 25 HOH HOH . I 4 HOH A 13 913 28 HOH HOH . I 4 HOH A 14 914 31 HOH HOH . I 4 HOH A 15 915 32 HOH HOH . I 4 HOH A 16 916 36 HOH HOH . I 4 HOH A 17 917 37 HOH HOH . I 4 HOH A 18 918 38 HOH HOH . I 4 HOH A 19 919 39 HOH HOH . I 4 HOH A 20 920 41 HOH HOH . I 4 HOH A 21 921 43 HOH HOH . I 4 HOH A 22 922 46 HOH HOH . I 4 HOH A 23 923 47 HOH HOH . I 4 HOH A 24 924 48 HOH HOH . J 4 HOH B 1 901 1 HOH HOH . J 4 HOH B 2 902 2 HOH HOH . J 4 HOH B 3 903 3 HOH HOH . J 4 HOH B 4 904 4 HOH HOH . J 4 HOH B 5 905 8 HOH HOH . J 4 HOH B 6 906 9 HOH HOH . J 4 HOH B 7 907 11 HOH HOH . J 4 HOH B 8 908 15 HOH HOH . J 4 HOH B 9 909 17 HOH HOH . J 4 HOH B 10 910 20 HOH HOH . J 4 HOH B 11 911 22 HOH HOH . J 4 HOH B 12 912 23 HOH HOH . J 4 HOH B 13 913 24 HOH HOH . J 4 HOH B 14 914 26 HOH HOH . J 4 HOH B 15 915 27 HOH HOH . J 4 HOH B 16 916 29 HOH HOH . J 4 HOH B 17 917 30 HOH HOH . J 4 HOH B 18 918 33 HOH HOH . J 4 HOH B 19 919 34 HOH HOH . J 4 HOH B 20 920 35 HOH HOH . J 4 HOH B 21 921 40 HOH HOH . J 4 HOH B 22 922 42 HOH HOH . J 4 HOH B 23 923 44 HOH HOH . J 4 HOH B 24 924 45 HOH HOH . J 4 HOH B 25 925 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ACP . . . H 3 50.049 22.781 7.102 1 46.86 ? N9 ACP 803 B 1 HETATM 2 C C8 ACP . . . H 3 49.136 23.155 6.142 1 46.38 ? C8 ACP 803 B 1 HETATM 3 N N7 ACP . . . H 3 49.669 23.405 4.968 1 47.39 ? N7 ACP 803 B 1 HETATM 4 C C5 ACP . . . H 3 51.032 23.18 5.167 1 48.56 ? C5 ACP 803 B 1 HETATM 5 C C6 ACP . . . H 3 52.157 23.275 4.301 1 47.29 ? C6 ACP 803 B 1 HETATM 6 N N6 ACP . . . H 3 52.087 23.635 3.013 1 45.12 ? N6 ACP 803 B 1 HETATM 7 N N1 ACP . . . H 3 53.371 22.984 4.823 1 46.62 ? N1 ACP 803 B 1 HETATM 8 C C2 ACP . . . H 3 53.447 22.625 6.114 1 46.26 ? C2 ACP 803 B 1 HETATM 9 N N3 ACP . . . H 3 52.474 22.501 7.019 1 47.06 ? N3 ACP 803 B 1 HETATM 10 C C4 ACP . . . H 3 51.276 22.796 6.477 1 47.92 ? C4 ACP 803 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #