data_2Q03 # _model_server_result.job_id NL-xVL8TUZ2m-ktFNFKIVg _model_server_result.datetime_utc '2024-11-13 03:37:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":138}' # _entry.id 2Q03 # _exptl.entry_id 2Q03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q03 _cell.length_a 145.83 _cell.length_b 145.83 _cell.length_c 45.47 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 13 A GLY 12 1_555 A N MSE 14 A MSE 13 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C GLY 13 A GLY 12 1_555 A N MSE 14 A MSE 13 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.319 ? covale ? covale3 A C MSE 14 A MSE 13 1_555 A N PHE 15 A PHE 14 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 14 A MSE 13 1_555 A N PHE 15 A PHE 14 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 A C LEU 56 A LEU 55 1_555 A N MSE 57 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C MSE 57 A MSE 56 1_555 A N SER 58 A SER 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 B C GLY 13 B GLY 12 1_555 B N MSE 14 B MSE 13 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C GLY 13 B GLY 12 1_555 B N MSE 14 B MSE 13 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.326 ? covale ? covale9 B C MSE 14 B MSE 13 1_555 B N PHE 15 B PHE 14 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale10 B C MSE 14 B MSE 13 1_555 B N PHE 15 B PHE 14 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale11 B C LEU 56 B LEU 55 1_555 B N MSE 57 B MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 B C MSE 57 B MSE 56 1_555 B N SER 58 B SER 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 2Q03 _atom_sites.fract_transf_matrix[1][1] 0.006857 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021993 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 138 2 GOL GOL . D 2 GOL B 1 138 1 GOL GOL . E 3 HOH A 1 139 3 HOH HOH . E 3 HOH A 2 140 4 HOH HOH . E 3 HOH A 3 141 10 HOH HOH . E 3 HOH A 4 142 12 HOH HOH . E 3 HOH A 5 143 15 HOH HOH . E 3 HOH A 6 144 16 HOH HOH . E 3 HOH A 7 145 17 HOH HOH . E 3 HOH A 8 146 18 HOH HOH . E 3 HOH A 9 147 23 HOH HOH . E 3 HOH A 10 148 24 HOH HOH . E 3 HOH A 11 149 25 HOH HOH . E 3 HOH A 12 150 27 HOH HOH . E 3 HOH A 13 151 32 HOH HOH . E 3 HOH A 14 152 33 HOH HOH . E 3 HOH A 15 153 34 HOH HOH . E 3 HOH A 16 154 38 HOH HOH . E 3 HOH A 17 155 39 HOH HOH . E 3 HOH A 18 156 40 HOH HOH . E 3 HOH A 19 157 42 HOH HOH . E 3 HOH A 20 158 43 HOH HOH . E 3 HOH A 21 159 45 HOH HOH . E 3 HOH A 22 160 46 HOH HOH . E 3 HOH A 23 161 47 HOH HOH . E 3 HOH A 24 162 49 HOH HOH . E 3 HOH A 25 163 51 HOH HOH . E 3 HOH A 26 164 53 HOH HOH . E 3 HOH A 27 165 56 HOH HOH . E 3 HOH A 28 166 58 HOH HOH . E 3 HOH A 29 167 60 HOH HOH . E 3 HOH A 30 168 61 HOH HOH . E 3 HOH A 31 169 62 HOH HOH . E 3 HOH A 32 170 63 HOH HOH . E 3 HOH A 33 171 68 HOH HOH . E 3 HOH A 34 172 69 HOH HOH . E 3 HOH A 35 173 72 HOH HOH . E 3 HOH A 36 174 73 HOH HOH . E 3 HOH A 37 175 81 HOH HOH . E 3 HOH A 38 176 84 HOH HOH . E 3 HOH A 39 177 85 HOH HOH . E 3 HOH A 40 178 86 HOH HOH . E 3 HOH A 41 179 89 HOH HOH . E 3 HOH A 42 180 92 HOH HOH . E 3 HOH A 43 181 93 HOH HOH . E 3 HOH A 44 182 94 HOH HOH . E 3 HOH A 45 183 96 HOH HOH . E 3 HOH A 46 184 99 HOH HOH . E 3 HOH A 47 185 104 HOH HOH . E 3 HOH A 48 186 105 HOH HOH . E 3 HOH A 49 187 106 HOH HOH . E 3 HOH A 50 188 109 HOH HOH . E 3 HOH A 51 189 111 HOH HOH . E 3 HOH A 52 190 112 HOH HOH . E 3 HOH A 53 191 113 HOH HOH . E 3 HOH A 54 192 114 HOH HOH . E 3 HOH A 55 193 116 HOH HOH . E 3 HOH A 56 194 119 HOH HOH . E 3 HOH A 57 195 120 HOH HOH . E 3 HOH A 58 196 122 HOH HOH . E 3 HOH A 59 197 128 HOH HOH . E 3 HOH A 60 198 129 HOH HOH . E 3 HOH A 61 199 131 HOH HOH . E 3 HOH A 62 200 132 HOH HOH . E 3 HOH A 63 201 135 HOH HOH . E 3 HOH A 64 202 138 HOH HOH . E 3 HOH A 65 203 141 HOH HOH . E 3 HOH A 66 204 143 HOH HOH . E 3 HOH A 67 205 144 HOH HOH . E 3 HOH A 68 206 145 HOH HOH . E 3 HOH A 69 207 146 HOH HOH . E 3 HOH A 70 208 147 HOH HOH . E 3 HOH A 71 209 149 HOH HOH . E 3 HOH A 72 210 157 HOH HOH . E 3 HOH A 73 211 159 HOH HOH . E 3 HOH A 74 212 160 HOH HOH . E 3 HOH A 75 213 162 HOH HOH . E 3 HOH A 76 214 164 HOH HOH . E 3 HOH A 77 215 165 HOH HOH . E 3 HOH A 78 216 167 HOH HOH . E 3 HOH A 79 217 170 HOH HOH . E 3 HOH A 80 218 172 HOH HOH . E 3 HOH A 81 219 176 HOH HOH . E 3 HOH A 82 220 179 HOH HOH . E 3 HOH A 83 221 180 HOH HOH . E 3 HOH A 84 222 182 HOH HOH . E 3 HOH A 85 223 184 HOH HOH . E 3 HOH A 86 224 186 HOH HOH . E 3 HOH A 87 225 187 HOH HOH . E 3 HOH A 88 226 188 HOH HOH . E 3 HOH A 89 227 190 HOH HOH . E 3 HOH A 90 228 192 HOH HOH . E 3 HOH A 91 229 194 HOH HOH . E 3 HOH A 92 230 195 HOH HOH . E 3 HOH A 93 231 196 HOH HOH . E 3 HOH A 94 232 198 HOH HOH . E 3 HOH A 95 233 199 HOH HOH . E 3 HOH A 96 234 201 HOH HOH . E 3 HOH A 97 235 203 HOH HOH . E 3 HOH A 98 236 204 HOH HOH . E 3 HOH A 99 237 205 HOH HOH . E 3 HOH A 100 238 206 HOH HOH . E 3 HOH A 101 239 208 HOH HOH . E 3 HOH A 102 240 209 HOH HOH . E 3 HOH A 103 241 210 HOH HOH . E 3 HOH A 104 242 211 HOH HOH . E 3 HOH A 105 243 212 HOH HOH . E 3 HOH A 106 244 216 HOH HOH . E 3 HOH A 107 245 218 HOH HOH . E 3 HOH A 108 246 220 HOH HOH . E 3 HOH A 109 247 222 HOH HOH . E 3 HOH A 110 248 224 HOH HOH . E 3 HOH A 111 249 229 HOH HOH . E 3 HOH A 112 250 231 HOH HOH . E 3 HOH A 113 251 232 HOH HOH . E 3 HOH A 114 252 235 HOH HOH . E 3 HOH A 115 253 237 HOH HOH . E 3 HOH A 116 254 239 HOH HOH . E 3 HOH A 117 255 240 HOH HOH . E 3 HOH A 118 256 242 HOH HOH . E 3 HOH A 119 257 244 HOH HOH . E 3 HOH A 120 258 246 HOH HOH . E 3 HOH A 121 259 247 HOH HOH . E 3 HOH A 122 260 248 HOH HOH . F 3 HOH B 1 139 5 HOH HOH . F 3 HOH B 2 140 6 HOH HOH . F 3 HOH B 3 141 7 HOH HOH . F 3 HOH B 4 142 8 HOH HOH . F 3 HOH B 5 143 9 HOH HOH . F 3 HOH B 6 144 11 HOH HOH . F 3 HOH B 7 145 13 HOH HOH . F 3 HOH B 8 146 14 HOH HOH . F 3 HOH B 9 147 19 HOH HOH . F 3 HOH B 10 148 20 HOH HOH . F 3 HOH B 11 149 21 HOH HOH . F 3 HOH B 12 150 22 HOH HOH . F 3 HOH B 13 151 26 HOH HOH . F 3 HOH B 14 152 28 HOH HOH . F 3 HOH B 15 153 29 HOH HOH . F 3 HOH B 16 154 30 HOH HOH . F 3 HOH B 17 155 31 HOH HOH . F 3 HOH B 18 156 35 HOH HOH . F 3 HOH B 19 157 36 HOH HOH . F 3 HOH B 20 158 37 HOH HOH . F 3 HOH B 21 159 41 HOH HOH . F 3 HOH B 22 160 44 HOH HOH . F 3 HOH B 23 161 48 HOH HOH . F 3 HOH B 24 162 50 HOH HOH . F 3 HOH B 25 163 52 HOH HOH . F 3 HOH B 26 164 54 HOH HOH . F 3 HOH B 27 165 55 HOH HOH . F 3 HOH B 28 166 57 HOH HOH . F 3 HOH B 29 167 59 HOH HOH . F 3 HOH B 30 168 64 HOH HOH . F 3 HOH B 31 169 65 HOH HOH . F 3 HOH B 32 170 66 HOH HOH . F 3 HOH B 33 171 67 HOH HOH . F 3 HOH B 34 172 70 HOH HOH . F 3 HOH B 35 173 71 HOH HOH . F 3 HOH B 36 174 74 HOH HOH . F 3 HOH B 37 175 75 HOH HOH . F 3 HOH B 38 176 76 HOH HOH . F 3 HOH B 39 177 77 HOH HOH . F 3 HOH B 40 178 78 HOH HOH . F 3 HOH B 41 179 79 HOH HOH . F 3 HOH B 42 180 80 HOH HOH . F 3 HOH B 43 181 82 HOH HOH . F 3 HOH B 44 182 83 HOH HOH . F 3 HOH B 45 183 87 HOH HOH . F 3 HOH B 46 184 88 HOH HOH . F 3 HOH B 47 185 90 HOH HOH . F 3 HOH B 48 186 91 HOH HOH . F 3 HOH B 49 187 95 HOH HOH . F 3 HOH B 50 188 97 HOH HOH . F 3 HOH B 51 189 98 HOH HOH . F 3 HOH B 52 190 100 HOH HOH . F 3 HOH B 53 191 101 HOH HOH . F 3 HOH B 54 192 102 HOH HOH . F 3 HOH B 55 193 103 HOH HOH . F 3 HOH B 56 194 107 HOH HOH . F 3 HOH B 57 195 108 HOH HOH . F 3 HOH B 58 196 110 HOH HOH . F 3 HOH B 59 197 115 HOH HOH . F 3 HOH B 60 198 117 HOH HOH . F 3 HOH B 61 199 118 HOH HOH . F 3 HOH B 62 200 121 HOH HOH . F 3 HOH B 63 201 123 HOH HOH . F 3 HOH B 64 202 124 HOH HOH . F 3 HOH B 65 203 125 HOH HOH . F 3 HOH B 66 204 126 HOH HOH . F 3 HOH B 67 205 127 HOH HOH . F 3 HOH B 68 206 130 HOH HOH . F 3 HOH B 69 207 133 HOH HOH . F 3 HOH B 70 208 134 HOH HOH . F 3 HOH B 71 209 136 HOH HOH . F 3 HOH B 72 210 137 HOH HOH . F 3 HOH B 73 211 139 HOH HOH . F 3 HOH B 74 212 140 HOH HOH . F 3 HOH B 75 213 142 HOH HOH . F 3 HOH B 76 214 148 HOH HOH . F 3 HOH B 77 215 150 HOH HOH . F 3 HOH B 78 216 151 HOH HOH . F 3 HOH B 79 217 152 HOH HOH . F 3 HOH B 80 218 153 HOH HOH . F 3 HOH B 81 219 154 HOH HOH . F 3 HOH B 82 220 155 HOH HOH . F 3 HOH B 83 221 156 HOH HOH . F 3 HOH B 84 222 158 HOH HOH . F 3 HOH B 85 223 161 HOH HOH . F 3 HOH B 86 224 163 HOH HOH . F 3 HOH B 87 225 166 HOH HOH . F 3 HOH B 88 226 168 HOH HOH . F 3 HOH B 89 227 169 HOH HOH . F 3 HOH B 90 228 171 HOH HOH . F 3 HOH B 91 229 173 HOH HOH . F 3 HOH B 92 230 174 HOH HOH . F 3 HOH B 93 231 175 HOH HOH . F 3 HOH B 94 232 177 HOH HOH . F 3 HOH B 95 233 178 HOH HOH . F 3 HOH B 96 234 181 HOH HOH . F 3 HOH B 97 235 183 HOH HOH . F 3 HOH B 98 236 185 HOH HOH . F 3 HOH B 99 237 189 HOH HOH . F 3 HOH B 100 238 191 HOH HOH . F 3 HOH B 101 239 193 HOH HOH . F 3 HOH B 102 240 197 HOH HOH . F 3 HOH B 103 241 200 HOH HOH . F 3 HOH B 104 242 202 HOH HOH . F 3 HOH B 105 243 207 HOH HOH . F 3 HOH B 106 244 213 HOH HOH . F 3 HOH B 107 245 214 HOH HOH . F 3 HOH B 108 246 215 HOH HOH . F 3 HOH B 109 247 217 HOH HOH . F 3 HOH B 110 248 219 HOH HOH . F 3 HOH B 111 249 221 HOH HOH . F 3 HOH B 112 250 223 HOH HOH . F 3 HOH B 113 251 225 HOH HOH . F 3 HOH B 114 252 226 HOH HOH . F 3 HOH B 115 253 227 HOH HOH . F 3 HOH B 116 254 228 HOH HOH . F 3 HOH B 117 255 230 HOH HOH . F 3 HOH B 118 256 233 HOH HOH . F 3 HOH B 119 257 234 HOH HOH . F 3 HOH B 120 258 236 HOH HOH . F 3 HOH B 121 259 238 HOH HOH . F 3 HOH B 122 260 241 HOH HOH . F 3 HOH B 123 261 243 HOH HOH . F 3 HOH B 124 262 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 53.524 6.895 13.163 1 67.3 ? C1 GOL 138 A 1 HETATM 2 O O1 GOL . . . C 2 53.077 6.279 11.981 1 47.17 ? O1 GOL 138 A 1 HETATM 3 C C2 GOL . . . C 2 52.852 8.245 13.414 1 72.96 ? C2 GOL 138 A 1 HETATM 4 O O2 GOL . . . C 2 51.739 8.042 14.27 1 80.16 ? O2 GOL 138 A 1 HETATM 5 C C3 GOL . . . C 2 53.922 9.205 13.978 1 71.1 ? C3 GOL 138 A 1 HETATM 6 O O3 GOL . . . C 2 53.498 10.528 14.243 1 72.58 ? O3 GOL 138 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #