data_2Q0A # _model_server_result.job_id 6xzHNQ2F1nXJbSPq_kxd8Q _model_server_result.datetime_utc '2024-10-12 15:27:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q0a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 2Q0A # _exptl.entry_id 2Q0A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q0A _cell.length_a 94.734 _cell.length_b 94.734 _cell.length_c 124.047 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q0A _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS tetrameric 4 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 PQS tetrameric 4 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2,3,4 B,D,F 2 1 A,C,E 3 1,2,3,4 B,D,F 3 5,6,7,8 B,D,F 4 1,9,10,11 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 94.734 94.734 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 94.734 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 94.734 0 5 'crystal symmetry operation' 5_555 x+1/2,y+1/2,z+1/2 1 0 0 0 1 0 0 0 1 47.367 47.367 62.0235 6 'crystal symmetry operation' 6_555 -x+1/2,-y+1/2,z+1/2 -1 0 0 0 -1 0 0 0 1 47.367 47.367 62.0235 7 'crystal symmetry operation' 7_555 -y+1/2,x+1/2,z+1/2 0 -1 0 1 0 0 0 0 1 47.367 47.367 62.0235 8 'crystal symmetry operation' 8_555 y+1/2,-x+1/2,z+1/2 0 1 0 -1 0 0 0 0 1 47.367 47.367 62.0235 9 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 10 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 11 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 237 n n PA O2A PCG doub 238 n n PA O5' PCG sing 239 n n PA O3' PCG sing 240 n n O1A HO1A PCG sing 241 n n O5' C5' PCG sing 242 n n C5' C4' PCG sing 243 n n C5' "H5'1" PCG sing 244 n n C5' "H5'2" PCG sing 245 n n C4' O4' PCG sing 246 n n C4' C3' PCG sing 247 n n C4' H4' PCG sing 248 n n O4' C1' PCG sing 249 n n C3' O3' PCG sing 250 n n C3' C2' PCG sing 251 n n C3' H3' PCG sing 252 n n C2' O2' PCG sing 253 n n C2' C1' PCG sing 254 n n C2' H2' PCG sing 255 n n O2' HO2' PCG sing 256 n n C1' N9 PCG sing 257 n n C1' H1' PCG sing 258 n n N9 C8 PCG sing 259 n y N9 C4 PCG sing 260 n y C8 N7 PCG doub 261 n y C8 H8 PCG sing 262 n n N7 C5 PCG sing 263 n y C5 C6 PCG sing 264 n n C5 C4 PCG doub 265 n y C6 O6 PCG doub 266 n n C6 N1 PCG sing 267 n n N1 C2 PCG sing 268 n n N1 HN1 PCG sing 269 n n C2 N2 PCG sing 270 n n C2 N3 PCG doub 271 n n N2 HN21 PCG sing 272 n n N2 HN22 PCG sing 273 n n N3 C4 PCG sing 274 n n # _atom_sites.entry_id 2Q0A _atom_sites.fract_transf_matrix[1][1] 0.010556 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PCG A 1 401 401 PCG PCG . D 2 PCG B 1 402 402 PCG PCG . E 3 HOH A 1 1 1 HOH HOH . E 3 HOH A 2 3 3 HOH HOH . E 3 HOH A 3 4 4 HOH HOH . E 3 HOH A 4 7 7 HOH HOH . E 3 HOH A 5 9 9 HOH HOH . E 3 HOH A 6 11 11 HOH HOH . E 3 HOH A 7 12 12 HOH HOH . E 3 HOH A 8 13 13 HOH HOH . E 3 HOH A 9 16 16 HOH HOH . E 3 HOH A 10 17 17 HOH HOH . E 3 HOH A 11 20 20 HOH HOH . E 3 HOH A 12 21 21 HOH HOH . E 3 HOH A 13 24 24 HOH HOH . E 3 HOH A 14 25 25 HOH HOH . E 3 HOH A 15 28 28 HOH HOH . E 3 HOH A 16 29 29 HOH HOH . E 3 HOH A 17 31 31 HOH HOH . E 3 HOH A 18 32 32 HOH HOH . E 3 HOH A 19 37 37 HOH HOH . E 3 HOH A 20 38 38 HOH HOH . E 3 HOH A 21 40 40 HOH HOH . E 3 HOH A 22 41 41 HOH HOH . E 3 HOH A 23 44 44 HOH HOH . E 3 HOH A 24 45 45 HOH HOH . E 3 HOH A 25 47 47 HOH HOH . E 3 HOH A 26 49 49 HOH HOH . E 3 HOH A 27 50 50 HOH HOH . E 3 HOH A 28 52 52 HOH HOH . E 3 HOH A 29 54 54 HOH HOH . E 3 HOH A 30 55 55 HOH HOH . E 3 HOH A 31 60 60 HOH HOH . E 3 HOH A 32 62 62 HOH HOH . E 3 HOH A 33 63 63 HOH HOH . E 3 HOH A 34 64 64 HOH HOH . E 3 HOH A 35 67 67 HOH HOH . E 3 HOH A 36 69 69 HOH HOH . E 3 HOH A 37 73 73 HOH HOH . E 3 HOH A 38 74 74 HOH HOH . E 3 HOH A 39 76 76 HOH HOH . E 3 HOH A 40 78 78 HOH HOH . E 3 HOH A 41 79 79 HOH HOH . E 3 HOH A 42 80 80 HOH HOH . E 3 HOH A 43 81 81 HOH HOH . E 3 HOH A 44 82 82 HOH HOH . E 3 HOH A 45 83 83 HOH HOH . E 3 HOH A 46 84 84 HOH HOH . E 3 HOH A 47 88 88 HOH HOH . E 3 HOH A 48 91 91 HOH HOH . E 3 HOH A 49 92 92 HOH HOH . E 3 HOH A 50 93 93 HOH HOH . E 3 HOH A 51 96 96 HOH HOH . E 3 HOH A 52 98 98 HOH HOH . E 3 HOH A 53 103 103 HOH HOH . E 3 HOH A 54 104 104 HOH HOH . E 3 HOH A 55 110 110 HOH HOH . E 3 HOH A 56 112 112 HOH HOH . E 3 HOH A 57 113 113 HOH HOH . E 3 HOH A 58 114 114 HOH HOH . E 3 HOH A 59 116 116 HOH HOH . E 3 HOH A 60 118 118 HOH HOH . E 3 HOH A 61 124 124 HOH HOH . E 3 HOH A 62 125 125 HOH HOH . E 3 HOH A 63 129 129 HOH HOH . E 3 HOH A 64 130 130 HOH HOH . E 3 HOH A 65 135 135 HOH HOH . E 3 HOH A 66 136 136 HOH HOH . E 3 HOH A 67 140 140 HOH HOH . E 3 HOH A 68 141 141 HOH HOH . E 3 HOH A 69 142 142 HOH HOH . E 3 HOH A 70 146 146 HOH HOH . E 3 HOH A 71 152 152 HOH HOH . E 3 HOH A 72 153 153 HOH HOH . E 3 HOH A 73 155 155 HOH HOH . E 3 HOH A 74 156 156 HOH HOH . E 3 HOH A 75 158 158 HOH HOH . E 3 HOH A 76 159 159 HOH HOH . E 3 HOH A 77 163 163 HOH HOH . E 3 HOH A 78 168 168 HOH HOH . E 3 HOH A 79 169 169 HOH HOH . E 3 HOH A 80 170 170 HOH HOH . E 3 HOH A 81 171 171 HOH HOH . E 3 HOH A 82 172 172 HOH HOH . E 3 HOH A 83 174 174 HOH HOH . E 3 HOH A 84 175 175 HOH HOH . E 3 HOH A 85 176 176 HOH HOH . E 3 HOH A 86 177 177 HOH HOH . E 3 HOH A 87 178 178 HOH HOH . E 3 HOH A 88 180 180 HOH HOH . E 3 HOH A 89 181 181 HOH HOH . E 3 HOH A 90 183 183 HOH HOH . E 3 HOH A 91 187 187 HOH HOH . E 3 HOH A 92 188 188 HOH HOH . E 3 HOH A 93 189 189 HOH HOH . E 3 HOH A 94 193 193 HOH HOH . E 3 HOH A 95 196 196 HOH HOH . E 3 HOH A 96 197 197 HOH HOH . E 3 HOH A 97 207 207 HOH HOH . E 3 HOH A 98 212 212 HOH HOH . E 3 HOH A 99 214 214 HOH HOH . E 3 HOH A 100 215 215 HOH HOH . E 3 HOH A 101 217 217 HOH HOH . E 3 HOH A 102 218 218 HOH HOH . E 3 HOH A 103 220 220 HOH HOH . F 3 HOH B 1 0 0 HOH HOH . F 3 HOH B 2 2 2 HOH HOH . F 3 HOH B 3 5 5 HOH HOH . F 3 HOH B 4 6 6 HOH HOH . F 3 HOH B 5 8 8 HOH HOH . F 3 HOH B 6 10 10 HOH HOH . F 3 HOH B 7 14 14 HOH HOH . F 3 HOH B 8 15 15 HOH HOH . F 3 HOH B 9 18 18 HOH HOH . F 3 HOH B 10 19 19 HOH HOH . F 3 HOH B 11 22 22 HOH HOH . F 3 HOH B 12 23 23 HOH HOH . F 3 HOH B 13 26 26 HOH HOH . F 3 HOH B 14 27 27 HOH HOH . F 3 HOH B 15 30 30 HOH HOH . F 3 HOH B 16 33 33 HOH HOH . F 3 HOH B 17 34 34 HOH HOH . F 3 HOH B 18 35 35 HOH HOH . F 3 HOH B 19 36 36 HOH HOH . F 3 HOH B 20 39 39 HOH HOH . F 3 HOH B 21 42 42 HOH HOH . F 3 HOH B 22 43 43 HOH HOH . F 3 HOH B 23 46 46 HOH HOH . F 3 HOH B 24 48 48 HOH HOH . F 3 HOH B 25 51 51 HOH HOH . F 3 HOH B 26 53 53 HOH HOH . F 3 HOH B 27 56 56 HOH HOH . F 3 HOH B 28 57 57 HOH HOH . F 3 HOH B 29 58 58 HOH HOH . F 3 HOH B 30 59 59 HOH HOH . F 3 HOH B 31 65 65 HOH HOH . F 3 HOH B 32 66 66 HOH HOH . F 3 HOH B 33 68 68 HOH HOH . F 3 HOH B 34 70 70 HOH HOH . F 3 HOH B 35 71 71 HOH HOH . F 3 HOH B 36 72 72 HOH HOH . F 3 HOH B 37 75 75 HOH HOH . F 3 HOH B 38 77 77 HOH HOH . F 3 HOH B 39 85 85 HOH HOH . F 3 HOH B 40 86 86 HOH HOH . F 3 HOH B 41 87 87 HOH HOH . F 3 HOH B 42 89 89 HOH HOH . F 3 HOH B 43 90 90 HOH HOH . F 3 HOH B 44 94 94 HOH HOH . F 3 HOH B 45 95 95 HOH HOH . F 3 HOH B 46 97 97 HOH HOH . F 3 HOH B 47 99 99 HOH HOH . F 3 HOH B 48 100 100 HOH HOH . F 3 HOH B 49 101 101 HOH HOH . F 3 HOH B 50 105 105 HOH HOH . F 3 HOH B 51 106 106 HOH HOH . F 3 HOH B 52 107 107 HOH HOH . F 3 HOH B 53 108 108 HOH HOH . F 3 HOH B 54 109 109 HOH HOH . F 3 HOH B 55 111 111 HOH HOH . F 3 HOH B 56 115 115 HOH HOH . F 3 HOH B 57 117 117 HOH HOH . F 3 HOH B 58 119 119 HOH HOH . F 3 HOH B 59 120 120 HOH HOH . F 3 HOH B 60 121 121 HOH HOH . F 3 HOH B 61 122 122 HOH HOH . F 3 HOH B 62 123 123 HOH HOH . F 3 HOH B 63 127 127 HOH HOH . F 3 HOH B 64 128 128 HOH HOH . F 3 HOH B 65 131 131 HOH HOH . F 3 HOH B 66 132 132 HOH HOH . F 3 HOH B 67 134 134 HOH HOH . F 3 HOH B 68 137 137 HOH HOH . F 3 HOH B 69 138 138 HOH HOH . F 3 HOH B 70 139 139 HOH HOH . F 3 HOH B 71 143 143 HOH HOH . F 3 HOH B 72 144 144 HOH HOH . F 3 HOH B 73 145 145 HOH HOH . F 3 HOH B 74 147 147 HOH HOH . F 3 HOH B 75 148 148 HOH HOH . F 3 HOH B 76 149 149 HOH HOH . F 3 HOH B 77 150 150 HOH HOH . F 3 HOH B 78 154 154 HOH HOH . F 3 HOH B 79 157 157 HOH HOH . F 3 HOH B 80 161 161 HOH HOH . F 3 HOH B 81 162 162 HOH HOH . F 3 HOH B 82 164 164 HOH HOH . F 3 HOH B 83 165 165 HOH HOH . F 3 HOH B 84 166 166 HOH HOH . F 3 HOH B 85 167 167 HOH HOH . F 3 HOH B 86 173 173 HOH HOH . F 3 HOH B 87 179 179 HOH HOH . F 3 HOH B 88 182 182 HOH HOH . F 3 HOH B 89 184 184 HOH HOH . F 3 HOH B 90 185 185 HOH HOH . F 3 HOH B 91 186 186 HOH HOH . F 3 HOH B 92 190 190 HOH HOH . F 3 HOH B 93 191 191 HOH HOH . F 3 HOH B 94 192 192 HOH HOH . F 3 HOH B 95 194 194 HOH HOH . F 3 HOH B 96 195 195 HOH HOH . F 3 HOH B 97 198 198 HOH HOH . F 3 HOH B 98 199 199 HOH HOH . F 3 HOH B 99 200 200 HOH HOH . F 3 HOH B 100 201 201 HOH HOH . F 3 HOH B 101 202 202 HOH HOH . F 3 HOH B 102 203 203 HOH HOH . F 3 HOH B 103 204 204 HOH HOH . F 3 HOH B 104 205 205 HOH HOH . F 3 HOH B 105 206 206 HOH HOH . F 3 HOH B 106 208 208 HOH HOH . F 3 HOH B 107 209 209 HOH HOH . F 3 HOH B 108 210 210 HOH HOH . F 3 HOH B 109 211 211 HOH HOH . F 3 HOH B 110 216 216 HOH HOH . F 3 HOH B 111 219 219 HOH HOH . F 3 HOH B 112 221 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . D 2 13.818 23.67 -21.823 1 40.76 ? PA PCG 402 B 1 HETATM 2 O O1A PCG . . . D 2 14.61 23.862 -23.058 1 41.49 ? O1A PCG 402 B 1 HETATM 3 O O2A PCG . . . D 2 12.894 22.52 -21.74 1 41.22 ? O2A PCG 402 B 1 HETATM 4 O O5' PCG . . . D 2 14.866 23.616 -20.573 1 40.95 ? O5' PCG 402 B 1 HETATM 5 C C5' PCG . . . D 2 15.642 24.811 -20.274 1 40.7 ? C5' PCG 402 B 1 HETATM 6 C C4' PCG . . . D 2 14.677 26.003 -20.069 1 39.28 ? C4' PCG 402 B 1 HETATM 7 O O4' PCG . . . D 2 15.18 27.306 -19.783 1 38.01 ? O4' PCG 402 B 1 HETATM 8 C C3' PCG . . . D 2 13.782 26.222 -21.243 1 38.08 ? C3' PCG 402 B 1 HETATM 9 O O3' PCG . . . D 2 13 25.047 -21.444 1 39.35 ? O3' PCG 402 B 1 HETATM 10 C C2' PCG . . . D 2 13.011 27.439 -20.852 1 37.31 ? C2' PCG 402 B 1 HETATM 11 O O2' PCG . . . D 2 11.786 27.103 -20.229 1 36.47 ? O2' PCG 402 B 1 HETATM 12 C C1' PCG . . . D 2 13.96 28.169 -19.864 1 38.71 ? C1' PCG 402 B 1 HETATM 13 N N9 PCG . . . D 2 14.37 29.515 -20.349 1 38.97 ? N9 PCG 402 B 1 HETATM 14 C C8 PCG . . . D 2 14.059 30.692 -19.768 1 38.48 ? C8 PCG 402 B 1 HETATM 15 N N7 PCG . . . D 2 14.602 31.686 -20.48 1 38.56 ? N7 PCG 402 B 1 HETATM 16 C C5 PCG . . . D 2 15.255 31.147 -21.507 1 39.23 ? C5 PCG 402 B 1 HETATM 17 C C6 PCG . . . D 2 16.009 31.675 -22.573 1 40.13 ? C6 PCG 402 B 1 HETATM 18 O O6 PCG . . . D 2 16.158 32.9 -22.678 1 40.49 ? O6 PCG 402 B 1 HETATM 19 N N1 PCG . . . D 2 16.598 30.771 -23.537 1 40.31 ? N1 PCG 402 B 1 HETATM 20 C C2 PCG . . . D 2 16.41 29.352 -23.395 1 39.23 ? C2 PCG 402 B 1 HETATM 21 N N2 PCG . . . D 2 16.938 28.49 -24.261 1 36.6 ? N2 PCG 402 B 1 HETATM 22 N N3 PCG . . . D 2 15.675 28.897 -22.348 1 39.48 ? N3 PCG 402 B 1 HETATM 23 C C4 PCG . . . D 2 15.109 29.756 -21.421 1 38.78 ? C4 PCG 402 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #