data_2Q1D
#
_model_server_result.job_id            sm7xiIZMjkLY63BR437Yww 
_model_server_result.datetime_utc      '2024-11-05 06:59:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2q1d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":897}' 
#
_entry.id    2Q1D 
#
_exptl.entry_id    2Q1D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              130.099 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2,5-DIOXOPENTANOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Q1D 
_cell.length_a            128.28 
_cell.length_b            128.28 
_cell.length_c            223.52 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Q1D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1,2,3,4 
A,B,C,D 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H6 O4' 
_chem_comp.formula_weight    130.099 
_chem_comp.id                DO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2,5-DIOXOPENTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C5 DO4 doub 83 n n 
C5 C4 DO4 sing 84 n n 
C5 H5 DO4 sing 85 n n 
C4 C3 DO4 sing 86 n n 
C4 H41 DO4 sing 87 n n 
C4 H42 DO4 sing 88 n n 
C3 C2 DO4 sing 89 n n 
C3 H31 DO4 sing 90 n n 
C3 H32 DO4 sing 91 n n 
C2 O5 DO4 doub 92 n n 
C2 C1 DO4 sing 93 n n 
C1 O1 DO4 doub 94 n n 
C1 O2 DO4 sing 95 n n 
O2 HO2 DO4 sing 96 n n 
#
_atom_sites.entry_id                     2Q1D 
_atom_sites.fract_transf_matrix[1][1]    0.007795 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007795 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004474 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG X 1 294 202 MG MG . 
C 3 DO4 X 1 897 897 DO4 DO4 . 
D 4 HOH X 1 898 1 HOH HOH . 
D 4 HOH X 2 899 294 HOH HOH . 
D 4 HOH X 3 900 295 HOH HOH . 
D 4 HOH X 4 901 296 HOH HOH . 
D 4 HOH X 5 902 297 HOH HOH . 
D 4 HOH X 6 903 298 HOH HOH . 
D 4 HOH X 7 904 299 HOH HOH . 
D 4 HOH X 8 905 300 HOH HOH . 
D 4 HOH X 9 906 301 HOH HOH . 
D 4 HOH X 10 907 302 HOH HOH . 
D 4 HOH X 11 908 303 HOH HOH . 
D 4 HOH X 12 909 304 HOH HOH . 
D 4 HOH X 13 910 305 HOH HOH . 
D 4 HOH X 14 911 306 HOH HOH . 
D 4 HOH X 15 912 307 HOH HOH . 
D 4 HOH X 16 913 308 HOH HOH . 
D 4 HOH X 17 914 309 HOH HOH . 
D 4 HOH X 18 915 310 HOH HOH . 
D 4 HOH X 19 916 311 HOH HOH . 
D 4 HOH X 20 917 312 HOH HOH . 
D 4 HOH X 21 918 313 HOH HOH . 
D 4 HOH X 22 919 314 HOH HOH . 
D 4 HOH X 23 920 315 HOH HOH . 
D 4 HOH X 24 921 316 HOH HOH . 
D 4 HOH X 25 922 317 HOH HOH . 
D 4 HOH X 26 923 318 HOH HOH . 
D 4 HOH X 27 924 319 HOH HOH . 
D 4 HOH X 28 925 320 HOH HOH . 
D 4 HOH X 29 926 321 HOH HOH . 
D 4 HOH X 30 927 322 HOH HOH . 
D 4 HOH X 31 928 323 HOH HOH . 
D 4 HOH X 32 929 324 HOH HOH . 
D 4 HOH X 33 930 325 HOH HOH . 
D 4 HOH X 34 931 33 HOH HOH . 
D 4 HOH X 35 932 34 HOH HOH . 
D 4 HOH X 36 933 35 HOH HOH . 
D 4 HOH X 37 934 36 HOH HOH . 
D 4 HOH X 38 935 37 HOH HOH . 
D 4 HOH X 39 936 38 HOH HOH . 
D 4 HOH X 40 937 39 HOH HOH . 
D 4 HOH X 41 938 40 HOH HOH . 
D 4 HOH X 42 939 41 HOH HOH . 
D 4 HOH X 43 940 42 HOH HOH . 
D 4 HOH X 44 941 43 HOH HOH . 
D 4 HOH X 45 942 44 HOH HOH . 
D 4 HOH X 46 943 45 HOH HOH . 
D 4 HOH X 47 944 46 HOH HOH . 
D 4 HOH X 48 945 47 HOH HOH . 
D 4 HOH X 49 946 48 HOH HOH . 
D 4 HOH X 50 947 49 HOH HOH . 
D 4 HOH X 51 948 1 HOH HOH . 
D 4 HOH X 52 949 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 DO4 . . . C 3 4.771 6.302 40.486 1 58.65 ? O3 DO4 897 X 1 
HETATM 2 C C5 DO4 . . . C 3 5.538 5.647 39.802 1 57.31 ? C5 DO4 897 X 1 
HETATM 3 C C4 DO4 . . . C 3 6.204 6.296 38.613 1 55.28 ? C4 DO4 897 X 1 
HETATM 4 C C3 DO4 . . . C 3 7.58 6.811 39.019 1 53.2 ? C3 DO4 897 X 1 
HETATM 5 C C2 DO4 . . . C 3 8.141 7.622 37.878 1 52.05 ? C2 DO4 897 X 1 
HETATM 6 O O5 DO4 . . . C 3 7.481 7.791 36.861 1 52.54 ? O5 DO4 897 X 1 
HETATM 7 C C1 DO4 . . . C 3 9.471 8.22 37.956 1 51.34 ? C1 DO4 897 X 1 
HETATM 8 O O1 DO4 . . . C 3 10.175 8.053 38.981 1 50.9 ? O1 DO4 897 X 1 
HETATM 9 O O2 DO4 . . . C 3 9.864 8.886 36.966 1 49.94 ? O2 DO4 897 X 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           9 
#