data_2Q1N # _model_server_result.job_id jmsv-pbfQZ3EBOa4mx-Dxw _model_server_result.datetime_utc '2024-11-15 19:31:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":400}' # _entry.id 2Q1N # _exptl.entry_id 2Q1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.7 _cell.angle_gamma 90 _cell.entry_id 2Q1N _cell.length_a 108.057 _cell.length_b 71.813 _cell.length_c 54.787 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1,2 B,G,H,I,J,L 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 13.902637 0 -52.993698 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 263 A GLN 263 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc2 A OG SER 265 A SER 265 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc3 E O1G ANP . A ANP 400 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? metalc ? metalc4 E O2G ANP . A ANP 400 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc5 E O1B ANP . A ANP 400 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc6 C CA CA . A CA 401 1_555 K O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc7 D CA CA . A CA 402 1_555 K O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc8 B OE1 GLN 263 B GLN 263 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc9 B OG SER 265 B SER 265 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc10 I O2G ANP . B ANP 400 1_555 G CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc11 I O1B ANP . B ANP 400 1_555 G CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2Q1N _atom_sites.fract_transf_matrix[1][1] 0.009254 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002429 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013925 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 401 401 CA CA . D 2 CA A 1 402 402 CA CA . E 3 ANP A 1 400 400 ANP ANP . F 4 LAR A 1 403 403 LAR LAR . G 2 CA B 1 401 401 CA CA . H 2 CA B 1 402 402 CA CA . I 3 ANP B 1 400 400 ANP ANP . J 4 LAR B 1 403 403 LAR LAR . K 5 HOH A 1 404 2 HOH HOH . K 5 HOH A 2 405 4 HOH HOH . K 5 HOH A 3 406 8 HOH HOH . K 5 HOH A 4 407 11 HOH HOH . K 5 HOH A 5 408 12 HOH HOH . K 5 HOH A 6 409 13 HOH HOH . K 5 HOH A 7 410 14 HOH HOH . K 5 HOH A 8 411 20 HOH HOH . K 5 HOH A 9 412 21 HOH HOH . L 5 HOH B 1 404 1 HOH HOH . L 5 HOH B 2 405 3 HOH HOH . L 5 HOH B 3 406 5 HOH HOH . L 5 HOH B 4 407 6 HOH HOH . L 5 HOH B 5 408 7 HOH HOH . L 5 HOH B 6 409 9 HOH HOH . L 5 HOH B 7 410 10 HOH HOH . L 5 HOH B 8 411 15 HOH HOH . L 5 HOH B 9 412 16 HOH HOH . L 5 HOH B 10 413 17 HOH HOH . L 5 HOH B 11 414 18 HOH HOH . L 5 HOH B 12 415 19 HOH HOH . L 5 HOH B 13 416 22 HOH HOH . L 5 HOH B 14 417 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . I 3 7.723 3.776 19.852 1 37.51 ? PG ANP 400 B 1 HETATM 2 O O1G ANP . . . I 3 6.792 4.882 19.429 1 43.98 ? O1G ANP 400 B 1 HETATM 3 O O2G ANP . . . I 3 7.097 2.744 20.747 1 42.54 ? O2G ANP 400 B 1 HETATM 4 O O3G ANP . . . I 3 9.115 4.186 20.262 1 29.2 ? O3G ANP 400 B 1 HETATM 5 P PB ANP . . . I 3 7.188 1.397 18.23 1 31.04 ? PB ANP 400 B 1 HETATM 6 O O1B ANP . . . I 3 5.961 1.35 19.07 1 37.64 ? O1B ANP 400 B 1 HETATM 7 O O2B ANP . . . I 3 7.083 1.09 16.751 1 36.21 ? O2B ANP 400 B 1 HETATM 8 N N3B ANP . . . I 3 7.878 2.96 18.346 1 34.06 ? N3B ANP 400 B 1 HETATM 9 P PA ANP . . . I 3 7.914 -1.146 19.066 1 31.87 ? PA ANP 400 B 1 HETATM 10 O O1A ANP . . . I 3 7.742 -1.485 20.538 1 36.52 ? O1A ANP 400 B 1 HETATM 11 O O2A ANP . . . I 3 6.844 -1.553 18.109 1 25.57 ? O2A ANP 400 B 1 HETATM 12 O O3A ANP . . . I 3 8.243 0.42 18.918 1 30.97 ? O3A ANP 400 B 1 HETATM 13 O O5' ANP . . . I 3 9.293 -1.793 18.601 1 30.98 ? O5' ANP 400 B 1 HETATM 14 C C5' ANP . . . I 3 9.887 -1.499 17.354 1 35.24 ? C5' ANP 400 B 1 HETATM 15 C C4' ANP . . . I 3 11.394 -1.441 17.558 1 37.24 ? C4' ANP 400 B 1 HETATM 16 O O4' ANP . . . I 3 11.826 -2.596 18.279 1 34.92 ? O4' ANP 400 B 1 HETATM 17 C C3' ANP . . . I 3 12.153 -1.454 16.245 1 40.26 ? C3' ANP 400 B 1 HETATM 18 O O3' ANP . . . I 3 13.235 -0.533 16.319 1 42.13 ? O3' ANP 400 B 1 HETATM 19 C C2' ANP . . . I 3 12.685 -2.868 16.138 1 40.21 ? C2' ANP 400 B 1 HETATM 20 O O2' ANP . . . I 3 13.888 -2.966 15.378 1 40.15 ? O2' ANP 400 B 1 HETATM 21 C C1' ANP . . . I 3 12.909 -3.198 17.594 1 37.31 ? C1' ANP 400 B 1 HETATM 22 N N9 ANP . . . I 3 12.945 -4.654 17.807 1 37.94 ? N9 ANP 400 B 1 HETATM 23 C C8 ANP . . . I 3 12.03 -5.552 17.413 1 39.44 ? C8 ANP 400 B 1 HETATM 24 N N7 ANP . . . I 3 12.405 -6.81 17.779 1 40.15 ? N7 ANP 400 B 1 HETATM 25 C C5 ANP . . . I 3 13.586 -6.707 18.42 1 38.54 ? C5 ANP 400 B 1 HETATM 26 C C6 ANP . . . I 3 14.544 -7.636 19.048 1 36.38 ? C6 ANP 400 B 1 HETATM 27 N N6 ANP . . . I 3 14.311 -8.963 19.091 1 39.65 ? N6 ANP 400 B 1 HETATM 28 N N1 ANP . . . I 3 15.652 -7.115 19.592 1 37.94 ? N1 ANP 400 B 1 HETATM 29 C C2 ANP . . . I 3 15.907 -5.786 19.569 1 38.57 ? C2 ANP 400 B 1 HETATM 30 N N3 ANP . . . I 3 15.086 -4.887 19.012 1 33.62 ? N3 ANP 400 B 1 HETATM 31 C C4 ANP . . . I 3 13.937 -5.282 18.428 1 36.5 ? C4 ANP 400 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #