data_2Q1V # _model_server_result.job_id XF-C9ZKZMcz0KHn0CcpJhQ _model_server_result.datetime_utc '2024-10-13 12:15:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":248}' # _entry.id 2Q1V # _exptl.entry_id 2Q1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.428 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 17,21-DIHYDROXYPREGNA-1,4-DIENE-3,11,20-TRIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q1V _cell.length_a 79.873 _cell.length_b 79.873 _cell.length_c 114.588 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H26 O5' _chem_comp.formula_weight 358.428 _chem_comp.id PDN _chem_comp.mon_nstd_flag . _chem_comp.name 17,21-DIHYDROXYPREGNA-1,4-DIENE-3,11,20-TRIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PREDNISONE;1,4 PREGNADIENE-17ALPHA,21-DIOL-3,11,20-TRIONE;1-CORTISONE;DEHYDROCORTISONE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PDN doub 250 n n C1 C10 PDN sing 251 n n C1 HC1 PDN sing 252 n n C2 C3 PDN sing 253 n n C2 HC2 PDN sing 254 n n C3 C4 PDN sing 255 n n C3 O1 PDN doub 256 n n C4 C5 PDN doub 257 n n C4 HC4 PDN sing 258 n n C5 C6 PDN sing 259 n n C5 C10 PDN sing 260 n n C6 C7 PDN sing 261 n n C6 HC61 PDN sing 262 n n C6 HC62 PDN sing 263 n n C7 C8 PDN sing 264 n n C7 HC71 PDN sing 265 n n C7 HC72 PDN sing 266 n n C8 C9 PDN sing 267 n n C8 C14 PDN sing 268 n n C8 HC8 PDN sing 269 n n C9 C10 PDN sing 270 n n C9 C11 PDN sing 271 n n C9 HC9 PDN sing 272 n n C10 C19 PDN sing 273 n n C11 C12 PDN sing 274 n n C11 O2 PDN doub 275 n n C12 C13 PDN sing 276 n n C12 H121 PDN sing 277 n n C12 H122 PDN sing 278 n n C13 C14 PDN sing 279 n n C13 C17 PDN sing 280 n n C13 C18 PDN sing 281 n n C14 C15 PDN sing 282 n n C14 HC41 PDN sing 283 n n C15 C16 PDN sing 284 n n C15 H151 PDN sing 285 n n C15 H152 PDN sing 286 n n C16 C17 PDN sing 287 n n C16 H161 PDN sing 288 n n C16 H162 PDN sing 289 n n C17 C20 PDN sing 290 n n C17 O3 PDN sing 291 n n C18 H181 PDN sing 292 n n C18 H182 PDN sing 293 n n C18 H183 PDN sing 294 n n C19 H191 PDN sing 295 n n C19 H192 PDN sing 296 n n C19 H193 PDN sing 297 n n C20 C21 PDN doub 298 z n C20 O4 PDN sing 299 n n C21 O5 PDN sing 300 n n C21 HC12 PDN sing 301 n n O3 HO3 PDN sing 302 n n O4 HO4 PDN sing 303 n n O5 HO5 PDN sing 304 n n # _atom_sites.entry_id 2Q1V _atom_sites.fract_transf_matrix[1][1] 0.01252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PDN A 1 248 1 PDN COR . C 3 GOL A 1 249 1 GOL GOL . D 4 HOH A 1 250 1 HOH HOH . D 4 HOH A 2 251 2 HOH HOH . D 4 HOH A 3 252 3 HOH HOH . D 4 HOH A 4 253 4 HOH HOH . D 4 HOH A 5 254 5 HOH HOH . D 4 HOH A 6 255 6 HOH HOH . D 4 HOH A 7 256 7 HOH HOH . D 4 HOH A 8 257 8 HOH HOH . D 4 HOH A 9 258 9 HOH HOH . D 4 HOH A 10 259 10 HOH HOH . D 4 HOH A 11 260 11 HOH HOH . D 4 HOH A 12 261 13 HOH HOH . D 4 HOH A 13 262 14 HOH HOH . D 4 HOH A 14 263 15 HOH HOH . D 4 HOH A 15 264 16 HOH HOH . D 4 HOH A 16 265 17 HOH HOH . D 4 HOH A 17 266 18 HOH HOH . D 4 HOH A 18 267 19 HOH HOH . D 4 HOH A 19 268 20 HOH HOH . D 4 HOH A 20 269 21 HOH HOH . D 4 HOH A 21 270 22 HOH HOH . D 4 HOH A 22 271 23 HOH HOH . D 4 HOH A 23 272 24 HOH HOH . D 4 HOH A 24 273 25 HOH HOH . D 4 HOH A 25 274 26 HOH HOH . D 4 HOH A 26 275 27 HOH HOH . D 4 HOH A 27 276 28 HOH HOH . D 4 HOH A 28 277 29 HOH HOH . D 4 HOH A 29 278 30 HOH HOH . D 4 HOH A 30 279 31 HOH HOH . D 4 HOH A 31 280 32 HOH HOH . D 4 HOH A 32 281 34 HOH HOH . D 4 HOH A 33 282 35 HOH HOH . D 4 HOH A 34 283 36 HOH HOH . D 4 HOH A 35 284 37 HOH HOH . D 4 HOH A 36 285 38 HOH HOH . D 4 HOH A 37 286 39 HOH HOH . D 4 HOH A 38 287 40 HOH HOH . D 4 HOH A 39 288 41 HOH HOH . D 4 HOH A 40 289 42 HOH HOH . D 4 HOH A 41 290 43 HOH HOH . D 4 HOH A 42 291 44 HOH HOH . D 4 HOH A 43 292 45 HOH HOH . D 4 HOH A 44 293 46 HOH HOH . D 4 HOH A 45 294 47 HOH HOH . D 4 HOH A 46 295 48 HOH HOH . D 4 HOH A 47 296 49 HOH HOH . D 4 HOH A 48 297 51 HOH HOH . D 4 HOH A 49 298 52 HOH HOH . D 4 HOH A 50 299 53 HOH HOH . D 4 HOH A 51 300 54 HOH HOH . D 4 HOH A 52 301 55 HOH HOH . D 4 HOH A 53 302 56 HOH HOH . D 4 HOH A 54 303 57 HOH HOH . D 4 HOH A 55 304 58 HOH HOH . D 4 HOH A 56 305 59 HOH HOH . D 4 HOH A 57 306 60 HOH HOH . D 4 HOH A 58 307 61 HOH HOH . D 4 HOH A 59 308 62 HOH HOH . D 4 HOH A 60 309 63 HOH HOH . D 4 HOH A 61 310 64 HOH HOH . D 4 HOH A 62 311 65 HOH HOH . D 4 HOH A 63 312 66 HOH HOH . D 4 HOH A 64 313 67 HOH HOH . D 4 HOH A 65 314 68 HOH HOH . D 4 HOH A 66 315 69 HOH HOH . D 4 HOH A 67 316 70 HOH HOH . D 4 HOH A 68 317 71 HOH HOH . D 4 HOH A 69 318 72 HOH HOH . D 4 HOH A 70 319 73 HOH HOH . D 4 HOH A 71 320 74 HOH HOH . D 4 HOH A 72 321 75 HOH HOH . D 4 HOH A 73 322 76 HOH HOH . D 4 HOH A 74 323 77 HOH HOH . D 4 HOH A 75 324 78 HOH HOH . D 4 HOH A 76 325 79 HOH HOH . D 4 HOH A 77 326 80 HOH HOH . D 4 HOH A 78 327 81 HOH HOH . D 4 HOH A 79 328 82 HOH HOH . D 4 HOH A 80 329 83 HOH HOH . D 4 HOH A 81 330 85 HOH HOH . D 4 HOH A 82 331 86 HOH HOH . D 4 HOH A 83 332 87 HOH HOH . D 4 HOH A 84 333 88 HOH HOH . D 4 HOH A 85 334 89 HOH HOH . D 4 HOH A 86 335 90 HOH HOH . D 4 HOH A 87 336 91 HOH HOH . D 4 HOH A 88 337 92 HOH HOH . D 4 HOH A 89 338 93 HOH HOH . D 4 HOH A 90 339 94 HOH HOH . D 4 HOH A 91 340 95 HOH HOH . D 4 HOH A 92 341 97 HOH HOH . D 4 HOH A 93 342 99 HOH HOH . D 4 HOH A 94 343 100 HOH HOH . D 4 HOH A 95 344 101 HOH HOH . D 4 HOH A 96 345 102 HOH HOH . D 4 HOH A 97 346 103 HOH HOH . D 4 HOH A 98 347 104 HOH HOH . D 4 HOH A 99 348 105 HOH HOH . D 4 HOH A 100 349 106 HOH HOH . D 4 HOH A 101 350 107 HOH HOH . D 4 HOH A 102 351 108 HOH HOH . D 4 HOH A 103 352 109 HOH HOH . D 4 HOH A 104 353 110 HOH HOH . D 4 HOH A 105 354 111 HOH HOH . D 4 HOH A 106 355 112 HOH HOH . D 4 HOH A 107 356 113 HOH HOH . D 4 HOH A 108 357 114 HOH HOH . D 4 HOH A 109 358 115 HOH HOH . D 4 HOH A 110 359 116 HOH HOH . D 4 HOH A 111 360 117 HOH HOH . D 4 HOH A 112 361 118 HOH HOH . D 4 HOH A 113 362 119 HOH HOH . D 4 HOH A 114 363 120 HOH HOH . D 4 HOH A 115 364 121 HOH HOH . D 4 HOH A 116 365 122 HOH HOH . D 4 HOH A 117 366 123 HOH HOH . D 4 HOH A 118 367 124 HOH HOH . D 4 HOH A 119 368 125 HOH HOH . D 4 HOH A 120 369 126 HOH HOH . D 4 HOH A 121 370 127 HOH HOH . D 4 HOH A 122 371 128 HOH HOH . D 4 HOH A 123 372 129 HOH HOH . D 4 HOH A 124 373 130 HOH HOH . D 4 HOH A 125 374 131 HOH HOH . D 4 HOH A 126 375 132 HOH HOH . D 4 HOH A 127 376 133 HOH HOH . D 4 HOH A 128 377 134 HOH HOH . D 4 HOH A 129 378 135 HOH HOH . D 4 HOH A 130 379 136 HOH HOH . D 4 HOH A 131 380 137 HOH HOH . D 4 HOH A 132 381 138 HOH HOH . D 4 HOH A 133 382 139 HOH HOH . D 4 HOH A 134 383 140 HOH HOH . D 4 HOH A 135 384 141 HOH HOH . D 4 HOH A 136 385 142 HOH HOH . D 4 HOH A 137 386 143 HOH HOH . D 4 HOH A 138 387 144 HOH HOH . D 4 HOH A 139 388 145 HOH HOH . D 4 HOH A 140 389 146 HOH HOH . D 4 HOH A 141 390 147 HOH HOH . D 4 HOH A 142 391 148 HOH HOH . D 4 HOH A 143 392 149 HOH HOH . D 4 HOH A 144 393 150 HOH HOH . D 4 HOH A 145 394 151 HOH HOH . D 4 HOH A 146 395 152 HOH HOH . D 4 HOH A 147 396 153 HOH HOH . D 4 HOH A 148 397 154 HOH HOH . D 4 HOH A 149 398 155 HOH HOH . D 4 HOH A 150 399 156 HOH HOH . D 4 HOH A 151 400 157 HOH HOH . D 4 HOH A 152 401 158 HOH HOH . D 4 HOH A 153 402 159 HOH HOH . D 4 HOH A 154 403 160 HOH HOH . D 4 HOH A 155 404 161 HOH HOH . D 4 HOH A 156 405 162 HOH HOH . D 4 HOH A 157 406 163 HOH HOH . D 4 HOH A 158 407 164 HOH HOH . D 4 HOH A 159 408 165 HOH HOH . D 4 HOH A 160 409 166 HOH HOH . D 4 HOH A 161 410 167 HOH HOH . D 4 HOH A 162 411 168 HOH HOH . D 4 HOH A 163 412 169 HOH HOH . D 4 HOH A 164 413 170 HOH HOH . D 4 HOH A 165 414 171 HOH HOH . D 4 HOH A 166 415 172 HOH HOH . D 4 HOH A 167 416 173 HOH HOH . D 4 HOH A 168 417 174 HOH HOH . D 4 HOH A 169 418 175 HOH HOH . D 4 HOH A 170 419 176 HOH HOH . D 4 HOH A 171 420 177 HOH HOH . D 4 HOH A 172 421 178 HOH HOH . D 4 HOH A 173 422 179 HOH HOH . D 4 HOH A 174 423 180 HOH HOH . D 4 HOH A 175 424 181 HOH HOH . D 4 HOH A 176 425 182 HOH HOH . D 4 HOH A 177 426 183 HOH HOH . D 4 HOH A 178 427 184 HOH HOH . D 4 HOH A 179 428 185 HOH HOH . D 4 HOH A 180 429 186 HOH HOH . D 4 HOH A 181 430 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PDN . . . B 2 -9.443 -31.204 -21.366 1 18.96 ? C1 PDN 248 A 1 HETATM 2 C C2 PDN . . . B 2 -9.772 -30.364 -22.588 1 18.55 ? C2 PDN 248 A 1 HETATM 3 C C3 PDN . . . B 2 -11.07 -29.882 -22.468 1 22.26 ? C3 PDN 248 A 1 HETATM 4 C C4 PDN . . . B 2 -11.573 -29.567 -21.209 1 16.81 ? C4 PDN 248 A 1 HETATM 5 C C5 PDN . . . B 2 -10.827 -29.741 -20.049 1 17.11 ? C5 PDN 248 A 1 HETATM 6 C C6 PDN . . . B 2 -11.414 -29.344 -18.848 1 17.98 ? C6 PDN 248 A 1 HETATM 7 C C7 PDN . . . B 2 -11.244 -30.349 -17.719 1 16.56 ? C7 PDN 248 A 1 HETATM 8 C C8 PDN . . . B 2 -9.786 -30.757 -17.615 1 16.48 ? C8 PDN 248 A 1 HETATM 9 C C9 PDN . . . B 2 -9.463 -31.409 -18.948 1 16.03 ? C9 PDN 248 A 1 HETATM 10 C C10 PDN . . . B 2 -9.599 -30.402 -20.082 1 16.08 ? C10 PDN 248 A 1 HETATM 11 C C11 PDN . . . B 2 -8.116 -32.127 -18.951 1 16.68 ? C11 PDN 248 A 1 HETATM 12 C C12 PDN . . . B 2 -7.988 -33.097 -17.783 1 15.81 ? C12 PDN 248 A 1 HETATM 13 C C13 PDN . . . B 2 -8.277 -32.366 -16.482 1 16.6 ? C13 PDN 248 A 1 HETATM 14 C C14 PDN . . . B 2 -9.691 -31.824 -16.537 1 14.75 ? C14 PDN 248 A 1 HETATM 15 C C15 PDN . . . B 2 -9.824 -31.279 -15.127 1 17.39 ? C15 PDN 248 A 1 HETATM 16 C C16 PDN . . . B 2 -9.261 -32.424 -14.292 1 15.13 ? C16 PDN 248 A 1 HETATM 17 C C17 PDN . . . B 2 -8.444 -33.264 -15.267 1 16.37 ? C17 PDN 248 A 1 HETATM 18 C C18 PDN . . . B 2 -7.275 -31.255 -16.211 1 18.5 ? C18 PDN 248 A 1 HETATM 19 C C19 PDN . . . B 2 -8.496 -29.346 -19.985 1 15.14 ? C19 PDN 248 A 1 HETATM 20 C C20 PDN . . . B 2 -7.109 -33.697 -14.656 1 19.13 ? C20 PDN 248 A 1 HETATM 21 C C21 PDN . . . B 2 -6.501 -34.985 -15.215 1 18.9 ? C21 PDN 248 A 1 HETATM 22 O O1 PDN . . . B 2 -11.806 -29.82 -23.452 1 21.5 ? O1 PDN 248 A 1 HETATM 23 O O2 PDN . . . B 2 -7.012 -31.212 -18.975 1 18.8 ? O2 PDN 248 A 1 HETATM 24 O O3 PDN . . . B 2 -9.193 -34.432 -15.632 1 18.1 ? O3 PDN 248 A 1 HETATM 25 O O4 PDN . . . B 2 -6.617 -33.124 -13.684 1 19.86 ? O4 PDN 248 A 1 HETATM 26 O O5 PDN . . . B 2 -5.102 -35.008 -14.916 1 20.44 ? O5 PDN 248 A 1 # _model_server_stats.io_time_ms 98 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #