data_2Q2X # _model_server_result.job_id KajvW71kZZLVCCD4b2fM7g _model_server_result.datetime_utc '2024-12-21 15:09:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3288}' # _entry.id 2Q2X # _exptl.entry_id 2Q2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Q2X _cell.length_a 105.433 _cell.length_b 105.433 _cell.length_c 46.314 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 105.433 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 52.7165 91.307656 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 17 A THR 31 1_555 A N MSE 18 A MSE 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 18 A MSE 32 1_555 A N LYS 19 A LYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ALA 96 A ALA 110 1_555 A N MSE 97 A MSE 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 97 A MSE 111 1_555 A N GLN 98 A GLN 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 A C PHE 127 A PHE 141 1_555 A N MSE 128 A MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C MSE 128 A MSE 142 1_555 A N LYS 129 A LYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C GLU 153 A GLU 167 1_555 A N MSE 154 A MSE 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 154 A MSE 168 1_555 A N ILE 155 A ILE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2Q2X _atom_sites.fract_transf_matrix[1][1] 0.009485 _atom_sites.fract_transf_matrix[1][2] 0.005476 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 3287 3287 GOL GOL . C 2 GOL A 1 3288 3288 GOL GOL . D 3 HOH A 1 3289 1 HOH HOH . D 3 HOH A 2 3290 2 HOH HOH . D 3 HOH A 3 3291 3 HOH HOH . D 3 HOH A 4 3292 4 HOH HOH . D 3 HOH A 5 3293 5 HOH HOH . D 3 HOH A 6 3294 6 HOH HOH . D 3 HOH A 7 3295 7 HOH HOH . D 3 HOH A 8 3296 8 HOH HOH . D 3 HOH A 9 3297 9 HOH HOH . D 3 HOH A 10 3298 10 HOH HOH . D 3 HOH A 11 3299 11 HOH HOH . D 3 HOH A 12 3300 12 HOH HOH . D 3 HOH A 13 3301 13 HOH HOH . D 3 HOH A 14 3302 14 HOH HOH . D 3 HOH A 15 3303 15 HOH HOH . D 3 HOH A 16 3304 16 HOH HOH . D 3 HOH A 17 3305 17 HOH HOH . D 3 HOH A 18 3306 18 HOH HOH . D 3 HOH A 19 3307 19 HOH HOH . D 3 HOH A 20 3308 20 HOH HOH . D 3 HOH A 21 3309 21 HOH HOH . D 3 HOH A 22 3310 22 HOH HOH . D 3 HOH A 23 3311 23 HOH HOH . D 3 HOH A 24 3312 24 HOH HOH . D 3 HOH A 25 3313 25 HOH HOH . D 3 HOH A 26 3314 26 HOH HOH . D 3 HOH A 27 3315 27 HOH HOH . D 3 HOH A 28 3316 28 HOH HOH . D 3 HOH A 29 3317 29 HOH HOH . D 3 HOH A 30 3318 30 HOH HOH . D 3 HOH A 31 3319 31 HOH HOH . D 3 HOH A 32 3320 32 HOH HOH . D 3 HOH A 33 3321 33 HOH HOH . D 3 HOH A 34 3322 34 HOH HOH . D 3 HOH A 35 3323 35 HOH HOH . D 3 HOH A 36 3324 36 HOH HOH . D 3 HOH A 37 3325 37 HOH HOH . D 3 HOH A 38 3326 38 HOH HOH . D 3 HOH A 39 3327 39 HOH HOH . D 3 HOH A 40 3328 40 HOH HOH . D 3 HOH A 41 3329 41 HOH HOH . D 3 HOH A 42 3330 42 HOH HOH . D 3 HOH A 43 3331 43 HOH HOH . D 3 HOH A 44 3332 44 HOH HOH . D 3 HOH A 45 3333 45 HOH HOH . D 3 HOH A 46 3334 46 HOH HOH . D 3 HOH A 47 3335 47 HOH HOH . D 3 HOH A 48 3336 48 HOH HOH . D 3 HOH A 49 3337 49 HOH HOH . D 3 HOH A 50 3338 50 HOH HOH . D 3 HOH A 51 3339 51 HOH HOH . D 3 HOH A 52 3340 52 HOH HOH . D 3 HOH A 53 3341 53 HOH HOH . D 3 HOH A 54 3342 54 HOH HOH . D 3 HOH A 55 3343 55 HOH HOH . D 3 HOH A 56 3344 56 HOH HOH . D 3 HOH A 57 3345 57 HOH HOH . D 3 HOH A 58 3346 58 HOH HOH . D 3 HOH A 59 3347 59 HOH HOH . D 3 HOH A 60 3348 60 HOH HOH . D 3 HOH A 61 3349 61 HOH HOH . D 3 HOH A 62 3350 62 HOH HOH . D 3 HOH A 63 3351 63 HOH HOH . D 3 HOH A 64 3352 64 HOH HOH . D 3 HOH A 65 3353 65 HOH HOH . D 3 HOH A 66 3354 66 HOH HOH . D 3 HOH A 67 3355 67 HOH HOH . D 3 HOH A 68 3356 68 HOH HOH . D 3 HOH A 69 3357 69 HOH HOH . D 3 HOH A 70 3358 70 HOH HOH . D 3 HOH A 71 3359 71 HOH HOH . D 3 HOH A 72 3360 72 HOH HOH . D 3 HOH A 73 3361 73 HOH HOH . D 3 HOH A 74 3362 74 HOH HOH . D 3 HOH A 75 3363 75 HOH HOH . D 3 HOH A 76 3364 76 HOH HOH . D 3 HOH A 77 3365 77 HOH HOH . D 3 HOH A 78 3366 78 HOH HOH . D 3 HOH A 79 3367 79 HOH HOH . D 3 HOH A 80 3368 80 HOH HOH . D 3 HOH A 81 3369 81 HOH HOH . D 3 HOH A 82 3370 82 HOH HOH . D 3 HOH A 83 3371 83 HOH HOH . D 3 HOH A 84 3372 84 HOH HOH . D 3 HOH A 85 3373 85 HOH HOH . D 3 HOH A 86 3374 86 HOH HOH . D 3 HOH A 87 3375 87 HOH HOH . D 3 HOH A 88 3376 88 HOH HOH . D 3 HOH A 89 3377 89 HOH HOH . D 3 HOH A 90 3378 90 HOH HOH . D 3 HOH A 91 3379 91 HOH HOH . D 3 HOH A 92 3380 92 HOH HOH . D 3 HOH A 93 3381 93 HOH HOH . D 3 HOH A 94 3382 94 HOH HOH . D 3 HOH A 95 3383 95 HOH HOH . D 3 HOH A 96 3384 96 HOH HOH . D 3 HOH A 97 3385 97 HOH HOH . D 3 HOH A 98 3386 98 HOH HOH . D 3 HOH A 99 3387 99 HOH HOH . D 3 HOH A 100 3388 101 HOH HOH . D 3 HOH A 101 3389 103 HOH HOH . D 3 HOH A 102 3390 104 HOH HOH . D 3 HOH A 103 3391 105 HOH HOH . D 3 HOH A 104 3392 106 HOH HOH . D 3 HOH A 105 3393 107 HOH HOH . D 3 HOH A 106 3394 108 HOH HOH . D 3 HOH A 107 3395 109 HOH HOH . D 3 HOH A 108 3396 110 HOH HOH . D 3 HOH A 109 3397 111 HOH HOH . D 3 HOH A 110 3398 112 HOH HOH . D 3 HOH A 111 3399 113 HOH HOH . D 3 HOH A 112 3400 115 HOH HOH . D 3 HOH A 113 3401 116 HOH HOH . D 3 HOH A 114 3402 117 HOH HOH . D 3 HOH A 115 3403 118 HOH HOH . D 3 HOH A 116 3404 119 HOH HOH . D 3 HOH A 117 3405 120 HOH HOH . D 3 HOH A 118 3406 122 HOH HOH . D 3 HOH A 119 3407 123 HOH HOH . D 3 HOH A 120 3408 124 HOH HOH . D 3 HOH A 121 3409 125 HOH HOH . D 3 HOH A 122 3410 126 HOH HOH . D 3 HOH A 123 3411 127 HOH HOH . D 3 HOH A 124 3412 128 HOH HOH . D 3 HOH A 125 3413 129 HOH HOH . D 3 HOH A 126 3414 130 HOH HOH . D 3 HOH A 127 3415 131 HOH HOH . D 3 HOH A 128 3416 132 HOH HOH . D 3 HOH A 129 3417 133 HOH HOH . D 3 HOH A 130 3418 134 HOH HOH . D 3 HOH A 131 3419 135 HOH HOH . D 3 HOH A 132 3420 136 HOH HOH . D 3 HOH A 133 3421 137 HOH HOH . D 3 HOH A 134 3422 138 HOH HOH . D 3 HOH A 135 3423 139 HOH HOH . D 3 HOH A 136 3424 140 HOH HOH . D 3 HOH A 137 3425 141 HOH HOH . D 3 HOH A 138 3426 142 HOH HOH . D 3 HOH A 139 3427 143 HOH HOH . D 3 HOH A 140 3428 144 HOH HOH . D 3 HOH A 141 3429 145 HOH HOH . D 3 HOH A 142 3430 146 HOH HOH . D 3 HOH A 143 3431 147 HOH HOH . D 3 HOH A 144 3432 148 HOH HOH . D 3 HOH A 145 3433 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 48.592 29.47 14.758 1 54.7 ? C1 GOL 3288 A 1 HETATM 2 O O1 GOL . . . C 2 49.107 30.766 14.527 1 54.31 ? O1 GOL 3288 A 1 HETATM 3 C C2 GOL . . . C 2 48.387 29.199 16.251 1 54.81 ? C2 GOL 3288 A 1 HETATM 4 O O2 GOL . . . C 2 48.094 27.838 16.437 1 53.14 ? O2 GOL 3288 A 1 HETATM 5 C C3 GOL . . . C 2 47.228 30.005 16.834 1 52.01 ? C3 GOL 3288 A 1 HETATM 6 O O3 GOL . . . C 2 47.685 30.808 17.902 1 49.3 ? O3 GOL 3288 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #