data_2Q2Z # _model_server_result.job_id yVirz898Woru_tWI63VLmQ _model_server_result.datetime_utc '2024-10-22 03:29:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q2z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 2Q2Z # _exptl.entry_id 2Q2Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q2Z _cell.length_a 69.2 _cell.length_b 79.45 _cell.length_c 160.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q2Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 111 A THR 112 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc2 D O3B ADP . A ADP 601 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc3 B OG1 THR 111 B THR 112 1_555 F MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc4 G O3B ADP . B ADP 602 1_555 F MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2Q2Z _atom_sites.fract_transf_matrix[1][1] 0.014451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 603 603 MG MG . D 3 ADP A 1 601 601 ADP ADP . E 4 MKK A 1 604 1 MKK MKK . F 2 MG B 1 604 604 MG MG . G 3 ADP B 1 602 602 ADP ADP . H 4 MKK B 1 605 2 MKK MKK . I 5 HOH A 1 605 1 HOH WAT . I 5 HOH A 2 606 3 HOH WAT . I 5 HOH A 3 607 4 HOH WAT . I 5 HOH A 4 608 6 HOH WAT . I 5 HOH A 5 609 11 HOH WAT . I 5 HOH A 6 610 12 HOH WAT . I 5 HOH A 7 611 14 HOH WAT . I 5 HOH A 8 612 15 HOH WAT . I 5 HOH A 9 613 16 HOH WAT . I 5 HOH A 10 614 18 HOH WAT . I 5 HOH A 11 615 19 HOH WAT . I 5 HOH A 12 616 21 HOH WAT . I 5 HOH A 13 617 22 HOH WAT . I 5 HOH A 14 618 23 HOH WAT . I 5 HOH A 15 619 26 HOH WAT . I 5 HOH A 16 620 31 HOH WAT . I 5 HOH A 17 621 32 HOH WAT . I 5 HOH A 18 622 33 HOH WAT . I 5 HOH A 19 623 34 HOH WAT . I 5 HOH A 20 624 35 HOH WAT . I 5 HOH A 21 625 37 HOH WAT . I 5 HOH A 22 626 41 HOH WAT . I 5 HOH A 23 627 42 HOH WAT . I 5 HOH A 24 628 45 HOH WAT . I 5 HOH A 25 629 48 HOH WAT . I 5 HOH A 26 630 49 HOH WAT . I 5 HOH A 27 631 53 HOH WAT . I 5 HOH A 28 632 54 HOH WAT . I 5 HOH A 29 633 57 HOH WAT . I 5 HOH A 30 634 58 HOH WAT . I 5 HOH A 31 635 60 HOH WAT . I 5 HOH A 32 636 61 HOH WAT . I 5 HOH A 33 637 66 HOH WAT . I 5 HOH A 34 638 68 HOH WAT . I 5 HOH A 35 639 70 HOH WAT . I 5 HOH A 36 640 71 HOH WAT . I 5 HOH A 37 641 72 HOH WAT . I 5 HOH A 38 642 74 HOH WAT . I 5 HOH A 39 643 76 HOH WAT . I 5 HOH A 40 644 78 HOH WAT . I 5 HOH A 41 645 79 HOH WAT . I 5 HOH A 42 646 80 HOH WAT . I 5 HOH A 43 647 83 HOH WAT . I 5 HOH A 44 648 85 HOH WAT . I 5 HOH A 45 649 87 HOH WAT . I 5 HOH A 46 650 88 HOH WAT . I 5 HOH A 47 651 89 HOH WAT . I 5 HOH A 48 652 90 HOH WAT . I 5 HOH A 49 653 92 HOH WAT . I 5 HOH A 50 654 94 HOH WAT . I 5 HOH A 51 655 96 HOH WAT . I 5 HOH A 52 656 98 HOH WAT . I 5 HOH A 53 657 99 HOH WAT . I 5 HOH A 54 658 101 HOH WAT . I 5 HOH A 55 659 102 HOH WAT . I 5 HOH A 56 660 104 HOH WAT . I 5 HOH A 57 661 105 HOH WAT . I 5 HOH A 58 662 107 HOH WAT . I 5 HOH A 59 663 108 HOH WAT . I 5 HOH A 60 664 109 HOH WAT . I 5 HOH A 61 665 110 HOH WAT . I 5 HOH A 62 666 112 HOH WAT . I 5 HOH A 63 667 114 HOH WAT . I 5 HOH A 64 668 116 HOH WAT . I 5 HOH A 65 669 117 HOH WAT . I 5 HOH A 66 670 118 HOH WAT . I 5 HOH A 67 671 119 HOH WAT . I 5 HOH A 68 672 120 HOH WAT . I 5 HOH A 69 673 121 HOH WAT . I 5 HOH A 70 674 122 HOH WAT . I 5 HOH A 71 675 123 HOH WAT . I 5 HOH A 72 676 126 HOH WAT . I 5 HOH A 73 677 127 HOH WAT . I 5 HOH A 74 678 128 HOH WAT . I 5 HOH A 75 679 130 HOH WAT . I 5 HOH A 76 680 131 HOH WAT . I 5 HOH A 77 681 132 HOH WAT . I 5 HOH A 78 682 134 HOH WAT . I 5 HOH A 79 683 135 HOH WAT . I 5 HOH A 80 684 136 HOH WAT . I 5 HOH A 81 685 137 HOH WAT . I 5 HOH A 82 686 140 HOH WAT . I 5 HOH A 83 687 141 HOH WAT . I 5 HOH A 84 688 144 HOH WAT . I 5 HOH A 85 689 146 HOH WAT . I 5 HOH A 86 690 148 HOH WAT . I 5 HOH A 87 691 151 HOH WAT . I 5 HOH A 88 692 154 HOH WAT . J 5 HOH B 1 606 2 HOH WAT . J 5 HOH B 2 607 5 HOH WAT . J 5 HOH B 3 608 7 HOH WAT . J 5 HOH B 4 609 8 HOH WAT . J 5 HOH B 5 610 9 HOH WAT . J 5 HOH B 6 611 10 HOH WAT . J 5 HOH B 7 612 13 HOH WAT . J 5 HOH B 8 613 17 HOH WAT . J 5 HOH B 9 614 20 HOH WAT . J 5 HOH B 10 615 24 HOH WAT . J 5 HOH B 11 616 25 HOH WAT . J 5 HOH B 12 617 27 HOH WAT . J 5 HOH B 13 618 28 HOH WAT . J 5 HOH B 14 619 29 HOH WAT . J 5 HOH B 15 620 30 HOH WAT . J 5 HOH B 16 621 36 HOH WAT . J 5 HOH B 17 622 38 HOH WAT . J 5 HOH B 18 623 39 HOH WAT . J 5 HOH B 19 624 40 HOH WAT . J 5 HOH B 20 625 43 HOH WAT . J 5 HOH B 21 626 44 HOH WAT . J 5 HOH B 22 627 46 HOH WAT . J 5 HOH B 23 628 47 HOH WAT . J 5 HOH B 24 629 50 HOH WAT . J 5 HOH B 25 630 51 HOH WAT . J 5 HOH B 26 631 52 HOH WAT . J 5 HOH B 27 632 55 HOH WAT . J 5 HOH B 28 633 56 HOH WAT . J 5 HOH B 29 634 59 HOH WAT . J 5 HOH B 30 635 62 HOH WAT . J 5 HOH B 31 636 63 HOH WAT . J 5 HOH B 32 637 64 HOH WAT . J 5 HOH B 33 638 65 HOH WAT . J 5 HOH B 34 639 67 HOH WAT . J 5 HOH B 35 640 69 HOH WAT . J 5 HOH B 36 641 73 HOH WAT . J 5 HOH B 37 642 75 HOH WAT . J 5 HOH B 38 643 77 HOH WAT . J 5 HOH B 39 644 81 HOH WAT . J 5 HOH B 40 645 82 HOH WAT . J 5 HOH B 41 646 84 HOH WAT . J 5 HOH B 42 647 86 HOH WAT . J 5 HOH B 43 648 91 HOH WAT . J 5 HOH B 44 649 93 HOH WAT . J 5 HOH B 45 650 95 HOH WAT . J 5 HOH B 46 651 97 HOH WAT . J 5 HOH B 47 652 100 HOH WAT . J 5 HOH B 48 653 103 HOH WAT . J 5 HOH B 49 654 106 HOH WAT . J 5 HOH B 50 655 111 HOH WAT . J 5 HOH B 51 656 113 HOH WAT . J 5 HOH B 52 657 115 HOH WAT . J 5 HOH B 53 658 124 HOH WAT . J 5 HOH B 54 659 125 HOH WAT . J 5 HOH B 55 660 129 HOH WAT . J 5 HOH B 56 661 133 HOH WAT . J 5 HOH B 57 662 138 HOH WAT . J 5 HOH B 58 663 139 HOH WAT . J 5 HOH B 59 664 142 HOH WAT . J 5 HOH B 60 665 143 HOH WAT . J 5 HOH B 61 666 145 HOH WAT . J 5 HOH B 62 667 147 HOH WAT . J 5 HOH B 63 668 149 HOH WAT . J 5 HOH B 64 669 150 HOH WAT . J 5 HOH B 65 670 152 HOH WAT . J 5 HOH B 66 671 153 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 3 15.058 6.535 99.781 1 32.15 ? PB ADP 601 A 1 HETATM 2 O O1B ADP . . . D 3 14.436 7.039 98.545 1 32.73 ? O1B ADP 601 A 1 HETATM 3 O O2B ADP . . . D 3 15.746 5.313 99.393 1 33.86 ? O2B ADP 601 A 1 HETATM 4 O O3B ADP . . . D 3 15.945 7.677 100.241 1 32.69 ? O3B ADP 601 A 1 HETATM 5 P PA ADP . . . D 3 13.57 6.895 102.2 1 41.82 ? PA ADP 601 A 1 HETATM 6 O O1A ADP . . . D 3 14.493 6.68 103.439 1 41.42 ? O1A ADP 601 A 1 HETATM 7 O O2A ADP . . . D 3 13.455 8.461 101.869 1 43 ? O2A ADP 601 A 1 HETATM 8 O O3A ADP . . . D 3 14.045 6.047 100.88 1 33.73 ? O3A ADP 601 A 1 HETATM 9 O O5' ADP . . . D 3 12.217 6.226 102.823 1 45.18 ? O5' ADP 601 A 1 HETATM 10 C C5' ADP . . . D 3 11.034 5.801 102.083 1 46.9 ? C5' ADP 601 A 1 HETATM 11 C C4' ADP . . . D 3 9.801 6.091 103.024 1 47.16 ? C4' ADP 601 A 1 HETATM 12 O O4' ADP . . . D 3 9.393 4.863 103.657 1 47.42 ? O4' ADP 601 A 1 HETATM 13 C C3' ADP . . . D 3 9.981 7.113 104.221 1 47.9 ? C3' ADP 601 A 1 HETATM 14 O O3' ADP . . . D 3 8.724 7.45 104.748 1 49.49 ? O3' ADP 601 A 1 HETATM 15 C C2' ADP . . . D 3 10.602 6.377 105.416 1 47.94 ? C2' ADP 601 A 1 HETATM 16 O O2' ADP . . . D 3 9.697 6.537 106.574 1 50.36 ? O2' ADP 601 A 1 HETATM 17 C C1' ADP . . . D 3 10.387 4.984 104.813 1 47.7 ? C1' ADP 601 A 1 HETATM 18 N N9 ADP . . . D 3 11.149 3.861 105.321 1 48.05 ? N9 ADP 601 A 1 HETATM 19 C C8 ADP . . . D 3 12.15 3.228 104.698 1 48.39 ? C8 ADP 601 A 1 HETATM 20 N N7 ADP . . . D 3 12.597 2.278 105.441 1 47.57 ? N7 ADP 601 A 1 HETATM 21 C C5 ADP . . . D 3 11.831 2.289 106.583 1 47.46 ? C5 ADP 601 A 1 HETATM 22 C C6 ADP . . . D 3 11.841 1.5 107.724 1 47.67 ? C6 ADP 601 A 1 HETATM 23 N N6 ADP . . . D 3 12.726 0.437 107.964 1 47.76 ? N6 ADP 601 A 1 HETATM 24 N N1 ADP . . . D 3 10.9 1.822 108.638 1 48.09 ? N1 ADP 601 A 1 HETATM 25 C C2 ADP . . . D 3 10.05 2.84 108.432 1 48.59 ? C2 ADP 601 A 1 HETATM 26 N N3 ADP . . . D 3 9.989 3.632 107.387 1 48.23 ? N3 ADP 601 A 1 HETATM 27 C C4 ADP . . . D 3 10.917 3.281 106.515 1 47.77 ? C4 ADP 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #