data_2Q31 # _model_server_result.job_id 6-lZnAau3s7tQ6cn5nLJeA _model_server_result.datetime_utc '2024-11-15 21:34:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q31 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":400}' # _entry.id 2Q31 # _exptl.entry_id 2Q31 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.68 _cell.angle_gamma 90 _cell.entry_id 2Q31 _cell.length_a 108.253 _cell.length_b 71.984 _cell.length_c 54.703 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2 B,F,G,H,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 13.86285 0 -52.91729 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O2G ATP . A ATP 400 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc2 D O1B ATP . A ATP 400 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc3 G O1B ATP . B ATP 400 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc4 G O2G ATP . B ATP 400 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc5 F CA CA . B CA 401 1_555 J O HOH . B HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.329 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2Q31 _atom_sites.fract_transf_matrix[1][1] 0.009238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00242 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 401 401 CA CA . D 3 ATP A 1 400 400 ATP ATP . E 4 LAR A 1 402 402 LAR LAR . F 2 CA B 1 401 401 CA CA . G 3 ATP B 1 400 400 ATP ATP . H 4 LAR B 1 402 402 LAR LAR . I 5 HOH A 1 403 2 HOH HOH . I 5 HOH A 2 404 3 HOH HOH . I 5 HOH A 3 405 4 HOH HOH . I 5 HOH A 4 406 8 HOH HOH . I 5 HOH A 5 407 11 HOH HOH . I 5 HOH A 6 408 13 HOH HOH . I 5 HOH A 7 409 16 HOH HOH . I 5 HOH A 8 410 19 HOH HOH . I 5 HOH A 9 411 21 HOH HOH . I 5 HOH A 10 412 23 HOH HOH . I 5 HOH A 11 413 24 HOH HOH . I 5 HOH A 12 414 25 HOH HOH . I 5 HOH A 13 415 27 HOH HOH . I 5 HOH A 14 416 28 HOH HOH . I 5 HOH A 15 417 29 HOH HOH . I 5 HOH A 16 418 30 HOH HOH . I 5 HOH A 17 419 31 HOH HOH . J 5 HOH B 1 403 1 HOH HOH . J 5 HOH B 2 404 5 HOH HOH . J 5 HOH B 3 405 6 HOH HOH . J 5 HOH B 4 406 7 HOH HOH . J 5 HOH B 5 407 9 HOH HOH . J 5 HOH B 6 408 10 HOH HOH . J 5 HOH B 7 409 12 HOH HOH . J 5 HOH B 8 410 14 HOH HOH . J 5 HOH B 9 411 15 HOH HOH . J 5 HOH B 10 412 17 HOH HOH . J 5 HOH B 11 413 18 HOH HOH . J 5 HOH B 12 414 20 HOH HOH . J 5 HOH B 13 415 22 HOH HOH . J 5 HOH B 14 416 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 3 7.665 3.712 19.936 1 27.83 ? PG ATP 400 B 1 HETATM 2 O O1G ATP . . . G 3 6.782 4.863 19.524 1 27.86 ? O1G ATP 400 B 1 HETATM 3 O O2G ATP . . . G 3 7.028 2.733 20.897 1 28.1 ? O2G ATP 400 B 1 HETATM 4 O O3G ATP . . . G 3 9.05 4.133 20.353 1 28.06 ? O3G ATP 400 B 1 HETATM 5 P PB ATP . . . G 3 7.149 1.517 18.253 1 26.45 ? PB ATP 400 B 1 HETATM 6 O O1B ATP . . . G 3 5.852 1.421 19.012 1 27.09 ? O1B ATP 400 B 1 HETATM 7 O O2B ATP . . . G 3 7.14 1.336 16.759 1 27.37 ? O2B ATP 400 B 1 HETATM 8 O O3B ATP . . . G 3 7.879 2.914 18.559 1 26.23 ? O3B ATP 400 B 1 HETATM 9 P PA ATP . . . G 3 7.751 -1.09 19.163 1 27.64 ? PA ATP 400 B 1 HETATM 10 O O1A ATP . . . G 3 7.304 -1.24 20.604 1 28.98 ? O1A ATP 400 B 1 HETATM 11 O O2A ATP . . . G 3 6.853 -1.556 18.051 1 26.74 ? O2A ATP 400 B 1 HETATM 12 O O3A ATP . . . G 3 8.164 0.446 18.9 1 27.28 ? O3A ATP 400 B 1 HETATM 13 O O5' ATP . . . G 3 9.168 -1.821 18.979 1 28.18 ? O5' ATP 400 B 1 HETATM 14 C C5' ATP . . . G 3 9.807 -1.83 17.699 1 28.95 ? C5' ATP 400 B 1 HETATM 15 C C4' ATP . . . G 3 11.309 -1.65 17.865 1 28.45 ? C4' ATP 400 B 1 HETATM 16 O O4' ATP . . . G 3 11.838 -2.815 18.499 1 28.2 ? O4' ATP 400 B 1 HETATM 17 C C3' ATP . . . G 3 12.051 -1.513 16.542 1 28.42 ? C3' ATP 400 B 1 HETATM 18 O O3' ATP . . . G 3 13.093 -0.541 16.659 1 28.62 ? O3' ATP 400 B 1 HETATM 19 C C2' ATP . . . G 3 12.656 -2.878 16.3 1 27.9 ? C2' ATP 400 B 1 HETATM 20 O O2' ATP . . . G 3 13.858 -2.837 15.523 1 27.03 ? O2' ATP 400 B 1 HETATM 21 C C1' ATP . . . G 3 12.915 -3.333 17.721 1 27.4 ? C1' ATP 400 B 1 HETATM 22 N N9 ATP . . . G 3 13.001 -4.801 17.849 1 27.28 ? N9 ATP 400 B 1 HETATM 23 C C8 ATP . . . G 3 12.121 -5.723 17.415 1 27.34 ? C8 ATP 400 B 1 HETATM 24 N N7 ATP . . . G 3 12.559 -6.974 17.724 1 27.41 ? N7 ATP 400 B 1 HETATM 25 C C5 ATP . . . G 3 13.731 -6.845 18.377 1 27.29 ? C5 ATP 400 B 1 HETATM 26 C C6 ATP . . . G 3 14.731 -7.746 18.989 1 27.21 ? C6 ATP 400 B 1 HETATM 27 N N6 ATP . . . G 3 14.583 -9.091 18.983 1 27.59 ? N6 ATP 400 B 1 HETATM 28 N N1 ATP . . . G 3 15.807 -7.178 19.565 1 27.11 ? N1 ATP 400 B 1 HETATM 29 C C2 ATP . . . G 3 15.99 -5.847 19.594 1 27.11 ? C2 ATP 400 B 1 HETATM 30 N N3 ATP . . . G 3 15.128 -4.977 19.058 1 26.5 ? N3 ATP 400 B 1 HETATM 31 C C4 ATP . . . G 3 14.009 -5.409 18.452 1 26.93 ? C4 ATP 400 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 31 #