data_2Q31 # _model_server_result.job_id WZ4_OZKurv4WNZgDc-iB4A _model_server_result.datetime_utc '2024-11-15 21:30:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q31 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 2Q31 # _exptl.entry_id 2Q31 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LATRUNCULIN A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.68 _cell.angle_gamma 90 _cell.entry_id 2Q31 _cell.length_a 108.253 _cell.length_b 71.984 _cell.length_c 54.703 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2 B,F,G,H,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 13.86285 0 -52.91729 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O2G ATP . A ATP 400 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc2 D O1B ATP . A ATP 400 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc3 G O1B ATP . B ATP 400 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc4 G O2G ATP . B ATP 400 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc5 F CA CA . B CA 401 1_555 J O HOH . B HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.329 ? # _chem_comp.formula 'C22 H31 N O5 S' _chem_comp.formula_weight 421.55 _chem_comp.id LAR _chem_comp.mon_nstd_flag . _chem_comp.name 'LATRUNCULIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(17-HYDROXY-5,12-DIMETHYL-3-OXO-2,16-DIOXABICYCLO[13.3.1]NONADECA-4,8,10-TRIEN-17-YL)-2-THIAZOLIDINONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C19 LAR sing 222 n n S1 C20 LAR sing 223 n n N1 C18 LAR sing 224 n n N1 C20 LAR sing 225 n n N1 HN1 LAR sing 226 n n O1 C1 LAR doub 227 n n O2 C1 LAR sing 228 n n O2 C15 LAR sing 229 n n O3 C13 LAR sing 230 n n O3 C17 LAR sing 231 n n O4 C17 LAR sing 232 n n O4 HO4 LAR sing 233 n n O5 C20 LAR doub 234 n n C1 C2 LAR sing 235 n n C2 C3 LAR doub 236 z n C2 H21 LAR sing 237 n n C3 C4 LAR sing 238 n n C3 C21 LAR sing 239 n n C4 C5 LAR sing 240 n n C4 H41 LAR sing 241 n n C4 H42 LAR sing 242 n n C5 C6 LAR sing 243 n n C5 H51 LAR sing 244 n n C5 H52 LAR sing 245 n n C6 C7 LAR doub 246 e n C6 H61 LAR sing 247 n n C7 C8 LAR sing 248 n n C7 H71 LAR sing 249 n n C8 C9 LAR doub 250 z n C8 H81 LAR sing 251 n n C9 C10 LAR sing 252 n n C9 H91 LAR sing 253 n n C10 C11 LAR sing 254 n n C10 C22 LAR sing 255 n n C10 H101 LAR sing 256 n n C11 C12 LAR sing 257 n n C11 H111 LAR sing 258 n n C11 H112 LAR sing 259 n n C12 C13 LAR sing 260 n n C12 H121 LAR sing 261 n n C12 H122 LAR sing 262 n n C13 C14 LAR sing 263 n n C13 H131 LAR sing 264 n n C14 C15 LAR sing 265 n n C14 H141 LAR sing 266 n n C14 H142 LAR sing 267 n n C15 C16 LAR sing 268 n n C15 H151 LAR sing 269 n n C16 C17 LAR sing 270 n n C16 H161 LAR sing 271 n n C16 H162 LAR sing 272 n n C17 C18 LAR sing 273 n n C18 C19 LAR sing 274 n n C18 H181 LAR sing 275 n n C19 H191 LAR sing 276 n n C19 H192 LAR sing 277 n n C21 H211 LAR sing 278 n n C21 H212 LAR sing 279 n n C21 H213 LAR sing 280 n n C22 H221 LAR sing 281 n n C22 H222 LAR sing 282 n n C22 H223 LAR sing 283 n n # _atom_sites.entry_id 2Q31 _atom_sites.fract_transf_matrix[1][1] 0.009238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00242 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 401 401 CA CA . D 3 ATP A 1 400 400 ATP ATP . E 4 LAR A 1 402 402 LAR LAR . F 2 CA B 1 401 401 CA CA . G 3 ATP B 1 400 400 ATP ATP . H 4 LAR B 1 402 402 LAR LAR . I 5 HOH A 1 403 2 HOH HOH . I 5 HOH A 2 404 3 HOH HOH . I 5 HOH A 3 405 4 HOH HOH . I 5 HOH A 4 406 8 HOH HOH . I 5 HOH A 5 407 11 HOH HOH . I 5 HOH A 6 408 13 HOH HOH . I 5 HOH A 7 409 16 HOH HOH . I 5 HOH A 8 410 19 HOH HOH . I 5 HOH A 9 411 21 HOH HOH . I 5 HOH A 10 412 23 HOH HOH . I 5 HOH A 11 413 24 HOH HOH . I 5 HOH A 12 414 25 HOH HOH . I 5 HOH A 13 415 27 HOH HOH . I 5 HOH A 14 416 28 HOH HOH . I 5 HOH A 15 417 29 HOH HOH . I 5 HOH A 16 418 30 HOH HOH . I 5 HOH A 17 419 31 HOH HOH . J 5 HOH B 1 403 1 HOH HOH . J 5 HOH B 2 404 5 HOH HOH . J 5 HOH B 3 405 6 HOH HOH . J 5 HOH B 4 406 7 HOH HOH . J 5 HOH B 5 407 9 HOH HOH . J 5 HOH B 6 408 10 HOH HOH . J 5 HOH B 7 409 12 HOH HOH . J 5 HOH B 8 410 14 HOH HOH . J 5 HOH B 9 411 15 HOH HOH . J 5 HOH B 10 412 17 HOH HOH . J 5 HOH B 11 413 18 HOH HOH . J 5 HOH B 12 414 20 HOH HOH . J 5 HOH B 13 415 22 HOH HOH . J 5 HOH B 14 416 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 LAR . . . H 4 15.509 0.965 11.126 1 33.29 ? S1 LAR 402 B 1 HETATM 2 N N1 LAR . . . H 4 13.46 1.364 12.563 1 32.38 ? N1 LAR 402 B 1 HETATM 3 O O1 LAR . . . H 4 10.272 -2.464 13.169 1 32.64 ? O1 LAR 402 B 1 HETATM 4 O O2 LAR . . . H 4 10.228 -1.841 10.923 1 30.45 ? O2 LAR 402 B 1 HETATM 5 O O3 LAR . . . H 4 11.3 1.254 9.584 1 31.15 ? O3 LAR 402 B 1 HETATM 6 O O4 LAR . . . H 4 12.727 -0.476 10.335 1 30.42 ? O4 LAR 402 B 1 HETATM 7 O O5 LAR . . . H 4 15.153 0.277 13.552 1 33.61 ? O5 LAR 402 B 1 HETATM 8 C C1 LAR . . . H 4 10.206 -2.831 12 1 31.52 ? C1 LAR 402 B 1 HETATM 9 C C2 LAR . . . H 4 10.137 -4.288 11.74 1 31.03 ? C2 LAR 402 B 1 HETATM 10 C C3 LAR . . . H 4 10.09 -4.871 10.524 1 30.38 ? C3 LAR 402 B 1 HETATM 11 C C4 LAR . . . H 4 10.1 -4.116 9.209 1 30.52 ? C4 LAR 402 B 1 HETATM 12 C C5 LAR . . . H 4 8.704 -3.621 8.832 1 30.94 ? C5 LAR 402 B 1 HETATM 13 C C6 LAR . . . H 4 8.556 -3.592 7.323 1 31.34 ? C6 LAR 402 B 1 HETATM 14 C C7 LAR . . . H 4 8.921 -2.587 6.66 1 31.24 ? C7 LAR 402 B 1 HETATM 15 C C8 LAR . . . H 4 9.274 -1.642 6.047 1 30.57 ? C8 LAR 402 B 1 HETATM 16 C C9 LAR . . . H 4 9.681 -0.634 5.422 1 30.5 ? C9 LAR 402 B 1 HETATM 17 C C10 LAR . . . H 4 10.908 0.092 5.926 1 31.27 ? C10 LAR 402 B 1 HETATM 18 C C11 LAR . . . H 4 10.535 1.387 6.65 1 31.36 ? C11 LAR 402 B 1 HETATM 19 C C12 LAR . . . H 4 9.614 1.178 7.856 1 31.08 ? C12 LAR 402 B 1 HETATM 20 C C13 LAR . . . H 4 10.269 0.445 9.024 1 30.24 ? C13 LAR 402 B 1 HETATM 21 C C14 LAR . . . H 4 9.205 0.178 10.078 1 30.19 ? C14 LAR 402 B 1 HETATM 22 C C15 LAR . . . H 4 9.798 -0.525 11.288 1 30.2 ? C15 LAR 402 B 1 HETATM 23 C C16 LAR . . . H 4 10.96 0.314 11.812 1 30.87 ? C16 LAR 402 B 1 HETATM 24 C C17 LAR . . . H 4 11.977 0.69 10.724 1 31.62 ? C17 LAR 402 B 1 HETATM 25 C C18 LAR . . . H 4 12.938 1.758 11.268 1 31.74 ? C18 LAR 402 B 1 HETATM 26 C C19 LAR . . . H 4 14.204 1.93 10.427 1 32.06 ? C19 LAR 402 B 1 HETATM 27 C C20 LAR . . . H 4 14.673 0.832 12.569 1 33.39 ? C20 LAR 402 B 1 HETATM 28 C C21 LAR . . . H 4 10.039 -6.373 10.475 1 29.35 ? C21 LAR 402 B 1 HETATM 29 C C22 LAR . . . H 4 11.844 0.375 4.756 1 31.56 ? C22 LAR 402 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #