data_2Q37 # _model_server_result.job_id cW8gz0IbR7NChNvjxt9wdw _model_server_result.datetime_utc '2025-03-04 09:14:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q37 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 2Q37 # _exptl.entry_id 2Q37 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 158.115 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(4S)-2,5-DIOXOIMIDAZOLIDIN-4-YL]UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Q37 _cell.length_a 73.582 _cell.length_b 73.582 _cell.length_c 69.647 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q37 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 46.431333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 42 A GLN 22 1_555 A N MSE 43 A MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C MSE 43 A MSE 23 1_555 A N SER 44 A SER 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C GLU 142 A GLU 122 1_555 A N MSE 143 A MSE 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 143 A MSE 123 1_555 A N LEU 144 A LEU 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C ALA 163 A ALA 143 1_555 A N MSE 164 A MSE 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 164 A MSE 144 1_555 A N GLU 165 A GLU 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C GLN 166 A GLN 146 1_555 A N MSE 167 A MSE 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale8 A C MSE 167 A MSE 147 1_555 A N LYS 168 A LYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C ARG 173 A ARG 153 1_555 A N MSE 174 A MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C MSE 174 A MSE 154 1_555 A N ALA 175 A ALA 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C4 H6 N4 O3' _chem_comp.formula_weight 158.115 _chem_comp.id 3AL _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(4S)-2,5-DIOXOIMIDAZOLIDIN-4-YL]UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (S)-ALLANTOIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 3AL sing 1 n n C4 N9 3AL sing 2 n n C4 N3 3AL sing 3 n n C4 H4 3AL sing 4 n n C5 O5 3AL doub 5 n n C5 N7 3AL sing 6 n n N7 C8 3AL sing 7 n n N7 HN7 3AL sing 8 n n C8 O8 3AL doub 9 n n C8 N9 3AL sing 10 n n N9 HN9 3AL sing 11 n n N3 C2 3AL sing 12 n n N3 HN3 3AL sing 13 n n C2 N1 3AL sing 14 n n C2 O2 3AL doub 15 n n N1 HN11 3AL sing 16 n n N1 HN12 3AL sing 17 n n # _atom_sites.entry_id 2Q37 _atom_sites.fract_transf_matrix[1][1] 0.01359 _atom_sites.fract_transf_matrix[1][2] 0.007846 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3AL A 1 200 200 3AL 3AL . C 3 HOH A 1 201 1 HOH WAT . C 3 HOH A 2 202 2 HOH WAT . C 3 HOH A 3 203 3 HOH WAT . C 3 HOH A 4 204 4 HOH WAT . C 3 HOH A 5 205 5 HOH WAT . C 3 HOH A 6 206 6 HOH WAT . C 3 HOH A 7 207 7 HOH WAT . C 3 HOH A 8 208 8 HOH WAT . C 3 HOH A 9 209 9 HOH WAT . C 3 HOH A 10 210 10 HOH WAT . C 3 HOH A 11 211 11 HOH WAT . C 3 HOH A 12 212 12 HOH WAT . C 3 HOH A 13 213 13 HOH WAT . C 3 HOH A 14 214 14 HOH WAT . C 3 HOH A 15 215 15 HOH WAT . C 3 HOH A 16 216 16 HOH WAT . C 3 HOH A 17 217 17 HOH WAT . C 3 HOH A 18 218 18 HOH WAT . C 3 HOH A 19 219 19 HOH WAT . C 3 HOH A 20 220 20 HOH WAT . C 3 HOH A 21 221 21 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 3AL . . . B 2 23.775 16.115 14.22 1 34.92 ? C4 3AL 200 A 1 HETATM 2 C C5 3AL . . . B 2 23.007 17.314 14.47 1 34.46 ? C5 3AL 200 A 1 HETATM 3 O O5 3AL . . . B 2 21.845 17.545 14.686 1 37.63 ? O5 3AL 200 A 1 HETATM 4 N N7 3AL . . . B 2 23.858 18.436 14.449 1 36.27 ? N7 3AL 200 A 1 HETATM 5 C C8 3AL . . . B 2 25.124 17.94 14.177 1 36.27 ? C8 3AL 200 A 1 HETATM 6 O O8 3AL . . . B 2 26.11 18.661 14.089 1 34.99 ? O8 3AL 200 A 1 HETATM 7 N N9 3AL . . . B 2 25.111 16.555 14.026 1 36.03 ? N9 3AL 200 A 1 HETATM 8 N N3 3AL . . . B 2 23.19 15.32 13.142 1 32.2 ? N3 3AL 200 A 1 HETATM 9 C C2 3AL . . . B 2 23.881 14.054 12.818 1 28.33 ? C2 3AL 200 A 1 HETATM 10 N N1 3AL . . . B 2 23.38 13.394 11.939 1 30.29 ? N1 3AL 200 A 1 HETATM 11 O O2 3AL . . . B 2 24.965 13.719 13.492 1 26.49 ? O2 3AL 200 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #