data_2Q3B # _model_server_result.job_id m3wsnx3RjiFMwhwUxXl4QA _model_server_result.datetime_utc '2024-10-10 15:26:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 2Q3B # _exptl.entry_id 2Q3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q3B _cell.length_a 70.991 _cell.length_b 70.991 _cell.length_c 179.624 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 46 A VAL 43 1_555 A N LLP 47 A LLP 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C LLP 47 A LLP 44 1_555 A N ASP 48 A ASP 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 284 n n C1 H11 MPD sing 285 n n C1 H12 MPD sing 286 n n C1 H13 MPD sing 287 n n C2 O2 MPD sing 288 n n C2 CM MPD sing 289 n n C2 C3 MPD sing 290 n n O2 HO2 MPD sing 291 n n CM HM1 MPD sing 292 n n CM HM2 MPD sing 293 n n CM HM3 MPD sing 294 n n C3 C4 MPD sing 295 n n C3 H31 MPD sing 296 n n C3 H32 MPD sing 297 n n C4 O4 MPD sing 298 n n C4 C5 MPD sing 299 n n C4 H4 MPD sing 300 n n O4 HO4 MPD sing 301 n n C5 H51 MPD sing 302 n n C5 H52 MPD sing 303 n n C5 H53 MPD sing 304 n n # _atom_sites.entry_id 2Q3B _atom_sites.fract_transf_matrix[1][1] 0.014086 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014086 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 400 400 CL CL . C 3 MPD A 1 401 401 MPD MPD . D 3 MPD A 1 402 402 MPD MPD . E 3 MPD A 1 403 403 MPD MPD . F 3 MPD A 1 404 404 MPD MPD . G 4 HOH A 1 405 2 HOH HOH . G 4 HOH A 2 406 3 HOH HOH . G 4 HOH A 3 407 4 HOH HOH . G 4 HOH A 4 408 5 HOH HOH . G 4 HOH A 5 409 6 HOH HOH . G 4 HOH A 6 410 7 HOH HOH . G 4 HOH A 7 411 8 HOH HOH . G 4 HOH A 8 412 9 HOH HOH . G 4 HOH A 9 413 10 HOH HOH . G 4 HOH A 10 414 11 HOH HOH . G 4 HOH A 11 415 12 HOH HOH . G 4 HOH A 12 416 13 HOH HOH . G 4 HOH A 13 417 14 HOH HOH . G 4 HOH A 14 418 15 HOH HOH . G 4 HOH A 15 419 16 HOH HOH . G 4 HOH A 16 420 17 HOH HOH . G 4 HOH A 17 421 18 HOH HOH . G 4 HOH A 18 422 19 HOH HOH . G 4 HOH A 19 423 20 HOH HOH . G 4 HOH A 20 424 21 HOH HOH . G 4 HOH A 21 425 22 HOH HOH . G 4 HOH A 22 426 24 HOH HOH . G 4 HOH A 23 427 25 HOH HOH . G 4 HOH A 24 428 26 HOH HOH . G 4 HOH A 25 429 27 HOH HOH . G 4 HOH A 26 430 28 HOH HOH . G 4 HOH A 27 431 29 HOH HOH . G 4 HOH A 28 432 30 HOH HOH . G 4 HOH A 29 433 31 HOH HOH . G 4 HOH A 30 434 32 HOH HOH . G 4 HOH A 31 435 33 HOH HOH . G 4 HOH A 32 436 34 HOH HOH . G 4 HOH A 33 437 35 HOH HOH . G 4 HOH A 34 438 36 HOH HOH . G 4 HOH A 35 439 37 HOH HOH . G 4 HOH A 36 440 38 HOH HOH . G 4 HOH A 37 441 39 HOH HOH . G 4 HOH A 38 442 40 HOH HOH . G 4 HOH A 39 443 42 HOH HOH . G 4 HOH A 40 444 43 HOH HOH . G 4 HOH A 41 445 45 HOH HOH . G 4 HOH A 42 446 46 HOH HOH . G 4 HOH A 43 447 48 HOH HOH . G 4 HOH A 44 448 50 HOH HOH . G 4 HOH A 45 449 51 HOH HOH . G 4 HOH A 46 450 52 HOH HOH . G 4 HOH A 47 451 53 HOH HOH . G 4 HOH A 48 452 54 HOH HOH . G 4 HOH A 49 453 56 HOH HOH . G 4 HOH A 50 454 57 HOH HOH . G 4 HOH A 51 455 60 HOH HOH . G 4 HOH A 52 456 61 HOH HOH . G 4 HOH A 53 457 62 HOH HOH . G 4 HOH A 54 458 63 HOH HOH . G 4 HOH A 55 459 64 HOH HOH . G 4 HOH A 56 460 65 HOH HOH . G 4 HOH A 57 461 66 HOH HOH . G 4 HOH A 58 462 67 HOH HOH . G 4 HOH A 59 463 68 HOH HOH . G 4 HOH A 60 464 69 HOH HOH . G 4 HOH A 61 465 70 HOH HOH . G 4 HOH A 62 466 71 HOH HOH . G 4 HOH A 63 467 72 HOH HOH . G 4 HOH A 64 468 73 HOH HOH . G 4 HOH A 65 469 74 HOH HOH . G 4 HOH A 66 470 76 HOH HOH . G 4 HOH A 67 471 77 HOH HOH . G 4 HOH A 68 472 78 HOH HOH . G 4 HOH A 69 473 79 HOH HOH . G 4 HOH A 70 474 80 HOH HOH . G 4 HOH A 71 475 81 HOH HOH . G 4 HOH A 72 476 82 HOH HOH . G 4 HOH A 73 477 83 HOH HOH . G 4 HOH A 74 478 84 HOH HOH . G 4 HOH A 75 479 85 HOH HOH . G 4 HOH A 76 480 86 HOH HOH . G 4 HOH A 77 481 88 HOH HOH . G 4 HOH A 78 482 89 HOH HOH . G 4 HOH A 79 483 94 HOH HOH . G 4 HOH A 80 484 97 HOH HOH . G 4 HOH A 81 485 98 HOH HOH . G 4 HOH A 82 486 100 HOH HOH . G 4 HOH A 83 487 101 HOH HOH . G 4 HOH A 84 488 104 HOH HOH . G 4 HOH A 85 489 108 HOH HOH . G 4 HOH A 86 490 109 HOH HOH . G 4 HOH A 87 491 110 HOH HOH . G 4 HOH A 88 492 111 HOH HOH . G 4 HOH A 89 493 113 HOH HOH . G 4 HOH A 90 494 114 HOH HOH . G 4 HOH A 91 495 115 HOH HOH . G 4 HOH A 92 496 116 HOH HOH . G 4 HOH A 93 497 117 HOH HOH . G 4 HOH A 94 498 118 HOH HOH . G 4 HOH A 95 499 119 HOH HOH . G 4 HOH A 96 500 123 HOH HOH . G 4 HOH A 97 501 124 HOH HOH . G 4 HOH A 98 502 125 HOH HOH . G 4 HOH A 99 503 126 HOH HOH . G 4 HOH A 100 504 127 HOH HOH . G 4 HOH A 101 505 129 HOH HOH . G 4 HOH A 102 506 130 HOH HOH . G 4 HOH A 103 507 132 HOH HOH . G 4 HOH A 104 508 134 HOH HOH . G 4 HOH A 105 509 135 HOH HOH . G 4 HOH A 106 510 136 HOH HOH . G 4 HOH A 107 511 139 HOH HOH . G 4 HOH A 108 512 143 HOH HOH . G 4 HOH A 109 513 144 HOH HOH . G 4 HOH A 110 514 145 HOH HOH . G 4 HOH A 111 515 147 HOH HOH . G 4 HOH A 112 516 149 HOH HOH . G 4 HOH A 113 517 150 HOH HOH . G 4 HOH A 114 518 153 HOH HOH . G 4 HOH A 115 519 155 HOH HOH . G 4 HOH A 116 520 158 HOH HOH . G 4 HOH A 117 521 172 HOH HOH . G 4 HOH A 118 522 174 HOH HOH . G 4 HOH A 119 523 183 HOH HOH . G 4 HOH A 120 524 185 HOH HOH . G 4 HOH A 121 525 195 HOH HOH . G 4 HOH A 122 526 227 HOH HOH . G 4 HOH A 123 527 232 HOH HOH . G 4 HOH A 124 528 237 HOH HOH . G 4 HOH A 125 529 238 HOH HOH . G 4 HOH A 126 530 239 HOH HOH . G 4 HOH A 127 531 240 HOH HOH . G 4 HOH A 128 532 241 HOH HOH . G 4 HOH A 129 533 243 HOH HOH . G 4 HOH A 130 534 244 HOH HOH . G 4 HOH A 131 535 246 HOH HOH . G 4 HOH A 132 536 249 HOH HOH . G 4 HOH A 133 537 257 HOH HOH . G 4 HOH A 134 538 272 HOH HOH . G 4 HOH A 135 539 273 HOH HOH . G 4 HOH A 136 540 274 HOH HOH . G 4 HOH A 137 541 275 HOH HOH . G 4 HOH A 138 542 276 HOH HOH . G 4 HOH A 139 543 277 HOH HOH . G 4 HOH A 140 544 278 HOH HOH . G 4 HOH A 141 545 279 HOH HOH . G 4 HOH A 142 546 280 HOH HOH . G 4 HOH A 143 547 281 HOH HOH . G 4 HOH A 144 548 282 HOH HOH . G 4 HOH A 145 549 284 HOH HOH . G 4 HOH A 146 550 285 HOH HOH . G 4 HOH A 147 551 286 HOH HOH . G 4 HOH A 148 552 287 HOH HOH . G 4 HOH A 149 553 288 HOH HOH . G 4 HOH A 150 554 289 HOH HOH . G 4 HOH A 151 555 290 HOH HOH . G 4 HOH A 152 556 291 HOH HOH . G 4 HOH A 153 557 292 HOH HOH . G 4 HOH A 154 558 293 HOH HOH . G 4 HOH A 155 559 294 HOH HOH . G 4 HOH A 156 560 295 HOH HOH . G 4 HOH A 157 561 296 HOH HOH . G 4 HOH A 158 562 297 HOH HOH . G 4 HOH A 159 563 298 HOH HOH . G 4 HOH A 160 564 299 HOH HOH . G 4 HOH A 161 565 300 HOH HOH . G 4 HOH A 162 566 301 HOH HOH . G 4 HOH A 163 567 302 HOH HOH . G 4 HOH A 164 568 303 HOH HOH . G 4 HOH A 165 569 305 HOH HOH . G 4 HOH A 166 570 306 HOH HOH . G 4 HOH A 167 571 307 HOH HOH . G 4 HOH A 168 572 308 HOH HOH . G 4 HOH A 169 573 309 HOH HOH . G 4 HOH A 170 574 310 HOH HOH . G 4 HOH A 171 575 311 HOH HOH . G 4 HOH A 172 576 312 HOH HOH . G 4 HOH A 173 577 313 HOH HOH . G 4 HOH A 174 578 314 HOH HOH . G 4 HOH A 175 579 315 HOH HOH . G 4 HOH A 176 580 316 HOH HOH . G 4 HOH A 177 581 317 HOH HOH . G 4 HOH A 178 582 318 HOH HOH . G 4 HOH A 179 583 319 HOH HOH . G 4 HOH A 180 584 320 HOH HOH . G 4 HOH A 181 585 321 HOH HOH . G 4 HOH A 182 586 322 HOH HOH . G 4 HOH A 183 587 323 HOH HOH . G 4 HOH A 184 588 324 HOH HOH . G 4 HOH A 185 589 325 HOH HOH . G 4 HOH A 186 590 326 HOH HOH . G 4 HOH A 187 591 327 HOH HOH . G 4 HOH A 188 592 328 HOH HOH . G 4 HOH A 189 593 329 HOH HOH . G 4 HOH A 190 594 330 HOH HOH . G 4 HOH A 191 595 331 HOH HOH . G 4 HOH A 192 596 332 HOH HOH . G 4 HOH A 193 597 333 HOH HOH . G 4 HOH A 194 598 334 HOH HOH . G 4 HOH A 195 599 335 HOH HOH . G 4 HOH A 196 600 336 HOH HOH . G 4 HOH A 197 601 337 HOH HOH . G 4 HOH A 198 602 338 HOH HOH . G 4 HOH A 199 603 339 HOH HOH . G 4 HOH A 200 604 340 HOH HOH . G 4 HOH A 201 605 341 HOH HOH . G 4 HOH A 202 606 344 HOH HOH . G 4 HOH A 203 607 345 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 3 -23.717 12.639 -11.437 1 65.18 ? C1 MPD 402 A 1 HETATM 2 C C2 MPD . . . D 3 -24.183 12.504 -9.988 1 65.56 ? C2 MPD 402 A 1 HETATM 3 O O2 MPD . . . D 3 -23.639 11.26 -9.483 1 64.98 ? O2 MPD 402 A 1 HETATM 4 C CM MPD . . . D 3 -23.613 13.635 -9.131 1 65.58 ? CM MPD 402 A 1 HETATM 5 C C3 MPD . . . D 3 -25.714 12.525 -9.889 1 65.59 ? C3 MPD 402 A 1 HETATM 6 C C4 MPD . . . D 3 -26.346 11.144 -9.806 1 65.99 ? C4 MPD 402 A 1 HETATM 7 O O4 MPD . . . D 3 -27.721 11.299 -9.548 1 66.6 ? O4 MPD 402 A 1 HETATM 8 C C5 MPD . . . D 3 -26.172 10.345 -11.09 1 66.3 ? C5 MPD 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #