data_2Q3B
#
_model_server_result.job_id            DV8UDFXt0FfqxqTBRP5ORQ 
_model_server_result.datetime_utc      '2024-12-02 13:12:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2q3b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    2Q3B 
#
_exptl.entry_id    2Q3B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Q3B 
_cell.length_a            70.991 
_cell.length_b            70.991 
_cell.length_c            179.624 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Q3B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 46 A VAL 43 1_555 A N LLP 47 A LLP 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C LLP 47 A LLP 44 1_555 A N ASP 48 A ASP 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 284 n n 
C1 H11 MPD sing 285 n n 
C1 H12 MPD sing 286 n n 
C1 H13 MPD sing 287 n n 
C2 O2 MPD sing 288 n n 
C2 CM MPD sing 289 n n 
C2 C3 MPD sing 290 n n 
O2 HO2 MPD sing 291 n n 
CM HM1 MPD sing 292 n n 
CM HM2 MPD sing 293 n n 
CM HM3 MPD sing 294 n n 
C3 C4 MPD sing 295 n n 
C3 H31 MPD sing 296 n n 
C3 H32 MPD sing 297 n n 
C4 O4 MPD sing 298 n n 
C4 C5 MPD sing 299 n n 
C4 H4 MPD sing 300 n n 
O4 HO4 MPD sing 301 n n 
C5 H51 MPD sing 302 n n 
C5 H52 MPD sing 303 n n 
C5 H53 MPD sing 304 n n 
#
_atom_sites.entry_id                     2Q3B 
_atom_sites.fract_transf_matrix[1][1]    0.014086 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014086 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005567 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 400 400 CL CL . 
C 3 MPD A 1 401 401 MPD MPD . 
D 3 MPD A 1 402 402 MPD MPD . 
E 3 MPD A 1 403 403 MPD MPD . 
F 3 MPD A 1 404 404 MPD MPD . 
G 4 HOH A 1 405 2 HOH HOH . 
G 4 HOH A 2 406 3 HOH HOH . 
G 4 HOH A 3 407 4 HOH HOH . 
G 4 HOH A 4 408 5 HOH HOH . 
G 4 HOH A 5 409 6 HOH HOH . 
G 4 HOH A 6 410 7 HOH HOH . 
G 4 HOH A 7 411 8 HOH HOH . 
G 4 HOH A 8 412 9 HOH HOH . 
G 4 HOH A 9 413 10 HOH HOH . 
G 4 HOH A 10 414 11 HOH HOH . 
G 4 HOH A 11 415 12 HOH HOH . 
G 4 HOH A 12 416 13 HOH HOH . 
G 4 HOH A 13 417 14 HOH HOH . 
G 4 HOH A 14 418 15 HOH HOH . 
G 4 HOH A 15 419 16 HOH HOH . 
G 4 HOH A 16 420 17 HOH HOH . 
G 4 HOH A 17 421 18 HOH HOH . 
G 4 HOH A 18 422 19 HOH HOH . 
G 4 HOH A 19 423 20 HOH HOH . 
G 4 HOH A 20 424 21 HOH HOH . 
G 4 HOH A 21 425 22 HOH HOH . 
G 4 HOH A 22 426 24 HOH HOH . 
G 4 HOH A 23 427 25 HOH HOH . 
G 4 HOH A 24 428 26 HOH HOH . 
G 4 HOH A 25 429 27 HOH HOH . 
G 4 HOH A 26 430 28 HOH HOH . 
G 4 HOH A 27 431 29 HOH HOH . 
G 4 HOH A 28 432 30 HOH HOH . 
G 4 HOH A 29 433 31 HOH HOH . 
G 4 HOH A 30 434 32 HOH HOH . 
G 4 HOH A 31 435 33 HOH HOH . 
G 4 HOH A 32 436 34 HOH HOH . 
G 4 HOH A 33 437 35 HOH HOH . 
G 4 HOH A 34 438 36 HOH HOH . 
G 4 HOH A 35 439 37 HOH HOH . 
G 4 HOH A 36 440 38 HOH HOH . 
G 4 HOH A 37 441 39 HOH HOH . 
G 4 HOH A 38 442 40 HOH HOH . 
G 4 HOH A 39 443 42 HOH HOH . 
G 4 HOH A 40 444 43 HOH HOH . 
G 4 HOH A 41 445 45 HOH HOH . 
G 4 HOH A 42 446 46 HOH HOH . 
G 4 HOH A 43 447 48 HOH HOH . 
G 4 HOH A 44 448 50 HOH HOH . 
G 4 HOH A 45 449 51 HOH HOH . 
G 4 HOH A 46 450 52 HOH HOH . 
G 4 HOH A 47 451 53 HOH HOH . 
G 4 HOH A 48 452 54 HOH HOH . 
G 4 HOH A 49 453 56 HOH HOH . 
G 4 HOH A 50 454 57 HOH HOH . 
G 4 HOH A 51 455 60 HOH HOH . 
G 4 HOH A 52 456 61 HOH HOH . 
G 4 HOH A 53 457 62 HOH HOH . 
G 4 HOH A 54 458 63 HOH HOH . 
G 4 HOH A 55 459 64 HOH HOH . 
G 4 HOH A 56 460 65 HOH HOH . 
G 4 HOH A 57 461 66 HOH HOH . 
G 4 HOH A 58 462 67 HOH HOH . 
G 4 HOH A 59 463 68 HOH HOH . 
G 4 HOH A 60 464 69 HOH HOH . 
G 4 HOH A 61 465 70 HOH HOH . 
G 4 HOH A 62 466 71 HOH HOH . 
G 4 HOH A 63 467 72 HOH HOH . 
G 4 HOH A 64 468 73 HOH HOH . 
G 4 HOH A 65 469 74 HOH HOH . 
G 4 HOH A 66 470 76 HOH HOH . 
G 4 HOH A 67 471 77 HOH HOH . 
G 4 HOH A 68 472 78 HOH HOH . 
G 4 HOH A 69 473 79 HOH HOH . 
G 4 HOH A 70 474 80 HOH HOH . 
G 4 HOH A 71 475 81 HOH HOH . 
G 4 HOH A 72 476 82 HOH HOH . 
G 4 HOH A 73 477 83 HOH HOH . 
G 4 HOH A 74 478 84 HOH HOH . 
G 4 HOH A 75 479 85 HOH HOH . 
G 4 HOH A 76 480 86 HOH HOH . 
G 4 HOH A 77 481 88 HOH HOH . 
G 4 HOH A 78 482 89 HOH HOH . 
G 4 HOH A 79 483 94 HOH HOH . 
G 4 HOH A 80 484 97 HOH HOH . 
G 4 HOH A 81 485 98 HOH HOH . 
G 4 HOH A 82 486 100 HOH HOH . 
G 4 HOH A 83 487 101 HOH HOH . 
G 4 HOH A 84 488 104 HOH HOH . 
G 4 HOH A 85 489 108 HOH HOH . 
G 4 HOH A 86 490 109 HOH HOH . 
G 4 HOH A 87 491 110 HOH HOH . 
G 4 HOH A 88 492 111 HOH HOH . 
G 4 HOH A 89 493 113 HOH HOH . 
G 4 HOH A 90 494 114 HOH HOH . 
G 4 HOH A 91 495 115 HOH HOH . 
G 4 HOH A 92 496 116 HOH HOH . 
G 4 HOH A 93 497 117 HOH HOH . 
G 4 HOH A 94 498 118 HOH HOH . 
G 4 HOH A 95 499 119 HOH HOH . 
G 4 HOH A 96 500 123 HOH HOH . 
G 4 HOH A 97 501 124 HOH HOH . 
G 4 HOH A 98 502 125 HOH HOH . 
G 4 HOH A 99 503 126 HOH HOH . 
G 4 HOH A 100 504 127 HOH HOH . 
G 4 HOH A 101 505 129 HOH HOH . 
G 4 HOH A 102 506 130 HOH HOH . 
G 4 HOH A 103 507 132 HOH HOH . 
G 4 HOH A 104 508 134 HOH HOH . 
G 4 HOH A 105 509 135 HOH HOH . 
G 4 HOH A 106 510 136 HOH HOH . 
G 4 HOH A 107 511 139 HOH HOH . 
G 4 HOH A 108 512 143 HOH HOH . 
G 4 HOH A 109 513 144 HOH HOH . 
G 4 HOH A 110 514 145 HOH HOH . 
G 4 HOH A 111 515 147 HOH HOH . 
G 4 HOH A 112 516 149 HOH HOH . 
G 4 HOH A 113 517 150 HOH HOH . 
G 4 HOH A 114 518 153 HOH HOH . 
G 4 HOH A 115 519 155 HOH HOH . 
G 4 HOH A 116 520 158 HOH HOH . 
G 4 HOH A 117 521 172 HOH HOH . 
G 4 HOH A 118 522 174 HOH HOH . 
G 4 HOH A 119 523 183 HOH HOH . 
G 4 HOH A 120 524 185 HOH HOH . 
G 4 HOH A 121 525 195 HOH HOH . 
G 4 HOH A 122 526 227 HOH HOH . 
G 4 HOH A 123 527 232 HOH HOH . 
G 4 HOH A 124 528 237 HOH HOH . 
G 4 HOH A 125 529 238 HOH HOH . 
G 4 HOH A 126 530 239 HOH HOH . 
G 4 HOH A 127 531 240 HOH HOH . 
G 4 HOH A 128 532 241 HOH HOH . 
G 4 HOH A 129 533 243 HOH HOH . 
G 4 HOH A 130 534 244 HOH HOH . 
G 4 HOH A 131 535 246 HOH HOH . 
G 4 HOH A 132 536 249 HOH HOH . 
G 4 HOH A 133 537 257 HOH HOH . 
G 4 HOH A 134 538 272 HOH HOH . 
G 4 HOH A 135 539 273 HOH HOH . 
G 4 HOH A 136 540 274 HOH HOH . 
G 4 HOH A 137 541 275 HOH HOH . 
G 4 HOH A 138 542 276 HOH HOH . 
G 4 HOH A 139 543 277 HOH HOH . 
G 4 HOH A 140 544 278 HOH HOH . 
G 4 HOH A 141 545 279 HOH HOH . 
G 4 HOH A 142 546 280 HOH HOH . 
G 4 HOH A 143 547 281 HOH HOH . 
G 4 HOH A 144 548 282 HOH HOH . 
G 4 HOH A 145 549 284 HOH HOH . 
G 4 HOH A 146 550 285 HOH HOH . 
G 4 HOH A 147 551 286 HOH HOH . 
G 4 HOH A 148 552 287 HOH HOH . 
G 4 HOH A 149 553 288 HOH HOH . 
G 4 HOH A 150 554 289 HOH HOH . 
G 4 HOH A 151 555 290 HOH HOH . 
G 4 HOH A 152 556 291 HOH HOH . 
G 4 HOH A 153 557 292 HOH HOH . 
G 4 HOH A 154 558 293 HOH HOH . 
G 4 HOH A 155 559 294 HOH HOH . 
G 4 HOH A 156 560 295 HOH HOH . 
G 4 HOH A 157 561 296 HOH HOH . 
G 4 HOH A 158 562 297 HOH HOH . 
G 4 HOH A 159 563 298 HOH HOH . 
G 4 HOH A 160 564 299 HOH HOH . 
G 4 HOH A 161 565 300 HOH HOH . 
G 4 HOH A 162 566 301 HOH HOH . 
G 4 HOH A 163 567 302 HOH HOH . 
G 4 HOH A 164 568 303 HOH HOH . 
G 4 HOH A 165 569 305 HOH HOH . 
G 4 HOH A 166 570 306 HOH HOH . 
G 4 HOH A 167 571 307 HOH HOH . 
G 4 HOH A 168 572 308 HOH HOH . 
G 4 HOH A 169 573 309 HOH HOH . 
G 4 HOH A 170 574 310 HOH HOH . 
G 4 HOH A 171 575 311 HOH HOH . 
G 4 HOH A 172 576 312 HOH HOH . 
G 4 HOH A 173 577 313 HOH HOH . 
G 4 HOH A 174 578 314 HOH HOH . 
G 4 HOH A 175 579 315 HOH HOH . 
G 4 HOH A 176 580 316 HOH HOH . 
G 4 HOH A 177 581 317 HOH HOH . 
G 4 HOH A 178 582 318 HOH HOH . 
G 4 HOH A 179 583 319 HOH HOH . 
G 4 HOH A 180 584 320 HOH HOH . 
G 4 HOH A 181 585 321 HOH HOH . 
G 4 HOH A 182 586 322 HOH HOH . 
G 4 HOH A 183 587 323 HOH HOH . 
G 4 HOH A 184 588 324 HOH HOH . 
G 4 HOH A 185 589 325 HOH HOH . 
G 4 HOH A 186 590 326 HOH HOH . 
G 4 HOH A 187 591 327 HOH HOH . 
G 4 HOH A 188 592 328 HOH HOH . 
G 4 HOH A 189 593 329 HOH HOH . 
G 4 HOH A 190 594 330 HOH HOH . 
G 4 HOH A 191 595 331 HOH HOH . 
G 4 HOH A 192 596 332 HOH HOH . 
G 4 HOH A 193 597 333 HOH HOH . 
G 4 HOH A 194 598 334 HOH HOH . 
G 4 HOH A 195 599 335 HOH HOH . 
G 4 HOH A 196 600 336 HOH HOH . 
G 4 HOH A 197 601 337 HOH HOH . 
G 4 HOH A 198 602 338 HOH HOH . 
G 4 HOH A 199 603 339 HOH HOH . 
G 4 HOH A 200 604 340 HOH HOH . 
G 4 HOH A 201 605 341 HOH HOH . 
G 4 HOH A 202 606 344 HOH HOH . 
G 4 HOH A 203 607 345 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . F 3 -20.923 4.417 -5.17 1 58.17 ? C1 MPD 404 A 1 
HETATM 2 C C2 MPD . . . F 3 -20.466 4.838 -3.783 1 58.52 ? C2 MPD 404 A 1 
HETATM 3 O O2 MPD . . . F 3 -21.516 4.457 -2.853 1 58.31 ? O2 MPD 404 A 1 
HETATM 4 C CM MPD . . . F 3 -19.167 4.139 -3.393 1 58.59 ? CM MPD 404 A 1 
HETATM 5 C C3 MPD . . . F 3 -20.261 6.35 -3.756 1 58.73 ? C3 MPD 404 A 1 
HETATM 6 C C4 MPD . . . F 3 -20.162 6.916 -2.34 1 58.59 ? C4 MPD 404 A 1 
HETATM 7 O O4 MPD . . . F 3 -19.103 7.837 -2.298 1 59.34 ? O4 MPD 404 A 1 
HETATM 8 C C5 MPD . . . F 3 -21.452 7.592 -1.885 1 58.08 ? C5 MPD 404 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           805 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#