data_2Q3C # _model_server_result.job_id C3ygYZ8x3G6HskFde1SgGg _model_server_result.datetime_utc '2024-11-23 21:20:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":311}' # _entry.id 2Q3C # _exptl.entry_id 2Q3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q3C _cell.length_a 72.458 _cell.length_b 72.458 _cell.length_c 178.936 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 46 A VAL 43 1_555 A N LLP 47 A LLP 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C LLP 47 A LLP 44 1_555 A N ASP 48 A ASP 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 284 n n C1 H11 MPD sing 285 n n C1 H12 MPD sing 286 n n C1 H13 MPD sing 287 n n C2 O2 MPD sing 288 n n C2 CM MPD sing 289 n n C2 C3 MPD sing 290 n n O2 HO2 MPD sing 291 n n CM HM1 MPD sing 292 n n CM HM2 MPD sing 293 n n CM HM3 MPD sing 294 n n C3 C4 MPD sing 295 n n C3 H31 MPD sing 296 n n C3 H32 MPD sing 297 n n C4 O4 MPD sing 298 n n C4 C5 MPD sing 299 n n C4 H4 MPD sing 300 n n O4 HO4 MPD sing 301 n n C5 H51 MPD sing 302 n n C5 H52 MPD sing 303 n n C5 H53 MPD sing 304 n n # _atom_sites.entry_id 2Q3C _atom_sites.fract_transf_matrix[1][1] 0.013801 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MPD A 1 311 301 MPD MPD . D 4 HOH A 1 312 1 HOH HOH . D 4 HOH A 2 313 2 HOH HOH . D 4 HOH A 3 314 3 HOH HOH . D 4 HOH A 4 315 4 HOH HOH . D 4 HOH A 5 316 6 HOH HOH . D 4 HOH A 6 317 8 HOH HOH . D 4 HOH A 7 318 9 HOH HOH . D 4 HOH A 8 319 10 HOH HOH . D 4 HOH A 9 320 11 HOH HOH . D 4 HOH A 10 321 12 HOH HOH . D 4 HOH A 11 322 13 HOH HOH . D 4 HOH A 12 323 14 HOH HOH . D 4 HOH A 13 324 15 HOH HOH . D 4 HOH A 14 325 16 HOH HOH . D 4 HOH A 15 326 17 HOH HOH . D 4 HOH A 16 327 18 HOH HOH . D 4 HOH A 17 328 19 HOH HOH . D 4 HOH A 18 329 20 HOH HOH . D 4 HOH A 19 330 21 HOH HOH . D 4 HOH A 20 331 23 HOH HOH . D 4 HOH A 21 332 24 HOH HOH . D 4 HOH A 22 333 25 HOH HOH . D 4 HOH A 23 334 26 HOH HOH . D 4 HOH A 24 335 27 HOH HOH . D 4 HOH A 25 336 28 HOH HOH . D 4 HOH A 26 337 29 HOH HOH . D 4 HOH A 27 338 30 HOH HOH . D 4 HOH A 28 339 31 HOH HOH . D 4 HOH A 29 340 32 HOH HOH . D 4 HOH A 30 341 34 HOH HOH . D 4 HOH A 31 342 35 HOH HOH . D 4 HOH A 32 343 36 HOH HOH . D 4 HOH A 33 344 37 HOH HOH . D 4 HOH A 34 345 39 HOH HOH . D 4 HOH A 35 346 41 HOH HOH . D 4 HOH A 36 347 43 HOH HOH . D 4 HOH A 37 348 44 HOH HOH . D 4 HOH A 38 349 46 HOH HOH . D 4 HOH A 39 350 47 HOH HOH . D 4 HOH A 40 351 48 HOH HOH . D 4 HOH A 41 352 49 HOH HOH . D 4 HOH A 42 353 50 HOH HOH . D 4 HOH A 43 354 52 HOH HOH . D 4 HOH A 44 355 53 HOH HOH . D 4 HOH A 45 356 55 HOH HOH . D 4 HOH A 46 357 56 HOH HOH . D 4 HOH A 47 358 60 HOH HOH . D 4 HOH A 48 359 61 HOH HOH . D 4 HOH A 49 360 62 HOH HOH . D 4 HOH A 50 361 63 HOH HOH . D 4 HOH A 51 362 64 HOH HOH . D 4 HOH A 52 363 66 HOH HOH . D 4 HOH A 53 364 68 HOH HOH . D 4 HOH A 54 365 70 HOH HOH . D 4 HOH A 55 366 71 HOH HOH . D 4 HOH A 56 367 74 HOH HOH . D 4 HOH A 57 368 76 HOH HOH . D 4 HOH A 58 369 77 HOH HOH . D 4 HOH A 59 370 79 HOH HOH . D 4 HOH A 60 371 80 HOH HOH . D 4 HOH A 61 372 82 HOH HOH . D 4 HOH A 62 373 83 HOH HOH . D 4 HOH A 63 374 85 HOH HOH . D 4 HOH A 64 375 86 HOH HOH . D 4 HOH A 65 376 87 HOH HOH . D 4 HOH A 66 377 91 HOH HOH . D 4 HOH A 67 378 92 HOH HOH . D 4 HOH A 68 379 95 HOH HOH . D 4 HOH A 69 380 98 HOH HOH . D 4 HOH A 70 381 99 HOH HOH . D 4 HOH A 71 382 104 HOH HOH . D 4 HOH A 72 383 105 HOH HOH . D 4 HOH A 73 384 108 HOH HOH . D 4 HOH A 74 385 111 HOH HOH . D 4 HOH A 75 386 112 HOH HOH . D 4 HOH A 76 387 114 HOH HOH . D 4 HOH A 77 388 115 HOH HOH . D 4 HOH A 78 389 116 HOH HOH . D 4 HOH A 79 390 117 HOH HOH . D 4 HOH A 80 391 118 HOH HOH . D 4 HOH A 81 392 119 HOH HOH . D 4 HOH A 82 393 120 HOH HOH . D 4 HOH A 83 394 121 HOH HOH . D 4 HOH A 84 395 122 HOH HOH . D 4 HOH A 85 396 123 HOH HOH . D 4 HOH A 86 397 124 HOH HOH . D 4 HOH A 87 398 125 HOH HOH . D 4 HOH A 88 399 126 HOH HOH . D 4 HOH A 89 400 127 HOH HOH . D 4 HOH A 90 401 128 HOH HOH . D 4 HOH A 91 402 129 HOH HOH . D 4 HOH A 92 403 130 HOH HOH . D 4 HOH A 93 404 132 HOH HOH . D 4 HOH A 94 405 133 HOH HOH . D 4 HOH A 95 406 134 HOH HOH . D 4 HOH A 96 407 135 HOH HOH . D 4 HOH A 97 408 136 HOH HOH . D 4 HOH A 98 409 137 HOH HOH . D 4 HOH A 99 410 138 HOH HOH . D 4 HOH A 100 411 139 HOH HOH . D 4 HOH A 101 412 140 HOH HOH . D 4 HOH A 102 413 141 HOH HOH . D 4 HOH A 103 414 142 HOH HOH . D 4 HOH A 104 415 143 HOH HOH . D 4 HOH A 105 416 144 HOH HOH . D 4 HOH A 106 417 145 HOH HOH . D 4 HOH A 107 418 146 HOH HOH . D 4 HOH A 108 419 147 HOH HOH . D 4 HOH A 109 420 150 HOH HOH . D 4 HOH A 110 421 151 HOH HOH . D 4 HOH A 111 422 152 HOH HOH . D 4 HOH A 112 423 153 HOH HOH . D 4 HOH A 113 424 154 HOH HOH . D 4 HOH A 114 425 155 HOH HOH . D 4 HOH A 115 426 156 HOH HOH . D 4 HOH A 116 427 157 HOH HOH . D 4 HOH A 117 428 158 HOH HOH . D 4 HOH A 118 429 159 HOH HOH . D 4 HOH A 119 430 160 HOH HOH . D 4 HOH A 120 431 161 HOH HOH . D 4 HOH A 121 432 162 HOH HOH . D 4 HOH A 122 433 163 HOH HOH . D 4 HOH A 123 434 164 HOH HOH . D 4 HOH A 124 435 165 HOH HOH . D 4 HOH A 125 436 167 HOH HOH . D 4 HOH A 126 437 168 HOH HOH . D 4 HOH A 127 438 169 HOH HOH . D 4 HOH A 128 439 170 HOH HOH . D 4 HOH A 129 440 171 HOH HOH . D 4 HOH A 130 441 172 HOH HOH . D 4 HOH A 131 442 173 HOH HOH . D 4 HOH A 132 443 174 HOH HOH . D 4 HOH A 133 444 176 HOH HOH . D 4 HOH A 134 445 177 HOH HOH . D 4 HOH A 135 446 178 HOH HOH . D 4 HOH A 136 447 179 HOH HOH . D 4 HOH A 137 448 180 HOH HOH . D 4 HOH A 138 449 181 HOH HOH . D 4 HOH A 139 450 185 HOH HOH . D 4 HOH A 140 451 187 HOH HOH . D 4 HOH A 141 452 189 HOH HOH . D 4 HOH A 142 453 192 HOH HOH . D 4 HOH A 143 454 193 HOH HOH . D 4 HOH A 144 455 195 HOH HOH . D 4 HOH A 145 456 196 HOH HOH . D 4 HOH A 146 457 197 HOH HOH . D 4 HOH A 147 458 202 HOH HOH . D 4 HOH A 148 459 204 HOH HOH . D 4 HOH A 149 460 205 HOH HOH . D 4 HOH A 150 461 208 HOH HOH . D 4 HOH A 151 462 209 HOH HOH . D 4 HOH A 152 463 210 HOH HOH . D 4 HOH A 153 464 215 HOH HOH . D 4 HOH A 154 465 216 HOH HOH . D 4 HOH A 155 466 228 HOH HOH . D 4 HOH A 156 467 231 HOH HOH . D 4 HOH A 157 468 236 HOH HOH . D 4 HOH A 158 469 242 HOH HOH . E 4 HOH B 1 33 33 HOH HOH . E 4 HOH B 2 65 65 HOH HOH . E 4 HOH B 3 166 166 HOH HOH . E 4 HOH B 4 175 175 HOH HOH . E 4 HOH B 5 182 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 0.254 -11.208 -9.811 1 72.71 ? C1 MPD 311 A 1 HETATM 2 C C2 MPD . . . C 3 -0.255 -10.032 -8.981 1 72.82 ? C2 MPD 311 A 1 HETATM 3 O O2 MPD . . . C 3 -1.006 -9.145 -9.849 1 73.16 ? O2 MPD 311 A 1 HETATM 4 C CM MPD . . . C 3 -1.213 -10.58 -7.931 1 72.39 ? CM MPD 311 A 1 HETATM 5 C C3 MPD . . . C 3 0.868 -9.228 -8.306 1 72.85 ? C3 MPD 311 A 1 HETATM 6 C C4 MPD . . . C 3 1.793 -8.467 -9.277 1 73.1 ? C4 MPD 311 A 1 HETATM 7 O O4 MPD . . . C 3 1.358 -7.273 -9.916 1 72.64 ? O4 MPD 311 A 1 HETATM 8 C C5 MPD . . . C 3 3.255 -8.962 -9.367 1 73.35 ? C5 MPD 311 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #