data_2Q3D # _model_server_result.job_id TnQDug0Uu6UdO7L1jLD0hQ _model_server_result.datetime_utc '2024-10-10 13:27:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":312}' # _entry.id 2Q3D # _exptl.entry_id 2Q3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q3D _cell.length_a 71.785 _cell.length_b 71.785 _cell.length_c 181.179 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 71.785 71.785 90.5895 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 2Q3D _atom_sites.fract_transf_matrix[1][1] 0.01393 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PDA A 1 311 1 PDA PHA . C 3 MPD A 1 312 1 MPD MPD . D 4 HOH A 1 313 1 HOH HOH . D 4 HOH A 2 314 2 HOH HOH . D 4 HOH A 3 315 3 HOH HOH . D 4 HOH A 4 316 4 HOH HOH . D 4 HOH A 5 317 5 HOH HOH . D 4 HOH A 6 318 7 HOH HOH . D 4 HOH A 7 319 8 HOH HOH . D 4 HOH A 8 320 9 HOH HOH . D 4 HOH A 9 321 10 HOH HOH . D 4 HOH A 10 322 11 HOH HOH . D 4 HOH A 11 323 12 HOH HOH . D 4 HOH A 12 324 13 HOH HOH . D 4 HOH A 13 325 14 HOH HOH . D 4 HOH A 14 326 15 HOH HOH . D 4 HOH A 15 327 16 HOH HOH . D 4 HOH A 16 328 17 HOH HOH . D 4 HOH A 17 329 18 HOH HOH . D 4 HOH A 18 330 19 HOH HOH . D 4 HOH A 19 331 20 HOH HOH . D 4 HOH A 20 332 21 HOH HOH . D 4 HOH A 21 333 22 HOH HOH . D 4 HOH A 22 334 23 HOH HOH . D 4 HOH A 23 335 24 HOH HOH . D 4 HOH A 24 336 25 HOH HOH . D 4 HOH A 25 337 26 HOH HOH . D 4 HOH A 26 338 27 HOH HOH . D 4 HOH A 27 339 28 HOH HOH . D 4 HOH A 28 340 29 HOH HOH . D 4 HOH A 29 341 30 HOH HOH . D 4 HOH A 30 342 31 HOH HOH . D 4 HOH A 31 343 32 HOH HOH . D 4 HOH A 32 344 33 HOH HOH . D 4 HOH A 33 345 34 HOH HOH . D 4 HOH A 34 346 35 HOH HOH . D 4 HOH A 35 347 36 HOH HOH . D 4 HOH A 36 348 37 HOH HOH . D 4 HOH A 37 349 38 HOH HOH . D 4 HOH A 38 350 39 HOH HOH . D 4 HOH A 39 351 40 HOH HOH . D 4 HOH A 40 352 41 HOH HOH . D 4 HOH A 41 353 42 HOH HOH . D 4 HOH A 42 354 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 36.652 15.257 65.89 1 83.3 ? C1 MPD 312 A 1 HETATM 2 C C2 MPD . . . C 3 35.388 15.16 66.722 1 83.56 ? C2 MPD 312 A 1 HETATM 3 O O2 MPD . . . C 3 35.833 14.804 68.063 1 82.27 ? O2 MPD 312 A 1 HETATM 4 C CM MPD . . . C 3 34.719 16.537 66.688 1 83.78 ? CM MPD 312 A 1 HETATM 5 C C3 MPD . . . C 3 34.459 14.073 66.153 1 83.26 ? C3 MPD 312 A 1 HETATM 6 C C4 MPD . . . C 3 33.306 13.618 67.065 1 83 ? C4 MPD 312 A 1 HETATM 7 O O4 MPD . . . C 3 32.129 13.403 66.321 1 82.09 ? O4 MPD 312 A 1 HETATM 8 C C5 MPD . . . C 3 33.611 12.298 67.735 1 82 ? C5 MPD 312 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #