data_2Q3M # _model_server_result.job_id pXRNcxiftTOs34nY7NcCJw _model_server_result.datetime_utc '2024-11-23 10:50:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 2Q3M # _exptl.entry_id 2Q3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q3M _cell.length_a 91.477 _cell.length_b 120.899 _cell.length_c 74.315 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 91.477 0 37.1575 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 237 n n C1 O1B MLA doub 238 n n C1 C2 MLA sing 239 n n O1A H1A MLA sing 240 n n C2 C3 MLA sing 241 n n C2 HC21 MLA sing 242 n n C2 HC22 MLA sing 243 n n C3 O3A MLA doub 244 n n C3 O3B MLA sing 245 n n O3B H3B MLA sing 246 n n # _atom_sites.entry_id 2Q3M _atom_sites.fract_transf_matrix[1][1] 0.010932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLA A 1 901 901 MLA MLA . C 3 HOH A 1 902 1 HOH HOH . C 3 HOH A 2 903 2 HOH HOH . C 3 HOH A 3 904 3 HOH HOH . C 3 HOH A 4 905 4 HOH HOH . C 3 HOH A 5 906 5 HOH HOH . C 3 HOH A 6 907 6 HOH HOH . C 3 HOH A 7 908 7 HOH HOH . C 3 HOH A 8 909 8 HOH HOH . C 3 HOH A 9 910 9 HOH HOH . C 3 HOH A 10 911 10 HOH HOH . C 3 HOH A 11 912 11 HOH HOH . C 3 HOH A 12 913 12 HOH HOH . C 3 HOH A 13 914 13 HOH HOH . C 3 HOH A 14 915 14 HOH HOH . C 3 HOH A 15 916 15 HOH HOH . C 3 HOH A 16 917 16 HOH HOH . C 3 HOH A 17 918 17 HOH HOH . C 3 HOH A 18 919 18 HOH HOH . C 3 HOH A 19 920 19 HOH HOH . C 3 HOH A 20 921 20 HOH HOH . C 3 HOH A 21 922 21 HOH HOH . C 3 HOH A 22 923 22 HOH HOH . C 3 HOH A 23 924 23 HOH HOH . C 3 HOH A 24 925 24 HOH HOH . C 3 HOH A 25 926 25 HOH HOH . C 3 HOH A 26 927 26 HOH HOH . C 3 HOH A 27 928 27 HOH HOH . C 3 HOH A 28 929 28 HOH HOH . C 3 HOH A 29 930 29 HOH HOH . C 3 HOH A 30 931 30 HOH HOH . C 3 HOH A 31 932 31 HOH HOH . C 3 HOH A 32 933 32 HOH HOH . C 3 HOH A 33 934 33 HOH HOH . C 3 HOH A 34 935 34 HOH HOH . C 3 HOH A 35 936 35 HOH HOH . C 3 HOH A 36 937 36 HOH HOH . C 3 HOH A 37 938 37 HOH HOH . C 3 HOH A 38 939 38 HOH HOH . C 3 HOH A 39 940 39 HOH HOH . C 3 HOH A 40 941 40 HOH HOH . C 3 HOH A 41 942 41 HOH HOH . C 3 HOH A 42 943 42 HOH HOH . C 3 HOH A 43 944 43 HOH HOH . C 3 HOH A 44 945 44 HOH HOH . C 3 HOH A 45 946 45 HOH HOH . C 3 HOH A 46 947 46 HOH HOH . C 3 HOH A 47 948 47 HOH HOH . C 3 HOH A 48 949 48 HOH HOH . C 3 HOH A 49 950 49 HOH HOH . C 3 HOH A 50 951 50 HOH HOH . C 3 HOH A 51 952 51 HOH HOH . C 3 HOH A 52 953 52 HOH HOH . C 3 HOH A 53 954 53 HOH HOH . C 3 HOH A 54 955 54 HOH HOH . C 3 HOH A 55 956 55 HOH HOH . C 3 HOH A 56 957 56 HOH HOH . C 3 HOH A 57 958 57 HOH HOH . C 3 HOH A 58 959 58 HOH HOH . C 3 HOH A 59 960 59 HOH HOH . C 3 HOH A 60 961 60 HOH HOH . C 3 HOH A 61 962 61 HOH HOH . C 3 HOH A 62 963 62 HOH HOH . C 3 HOH A 63 964 63 HOH HOH . C 3 HOH A 64 965 64 HOH HOH . C 3 HOH A 65 966 65 HOH HOH . C 3 HOH A 66 967 66 HOH HOH . C 3 HOH A 67 968 67 HOH HOH . C 3 HOH A 68 969 68 HOH HOH . C 3 HOH A 69 970 69 HOH HOH . C 3 HOH A 70 971 70 HOH HOH . C 3 HOH A 71 972 71 HOH HOH . C 3 HOH A 72 973 72 HOH HOH . C 3 HOH A 73 974 73 HOH HOH . C 3 HOH A 74 975 74 HOH HOH . C 3 HOH A 75 976 75 HOH HOH . C 3 HOH A 76 977 76 HOH HOH . C 3 HOH A 77 978 77 HOH HOH . C 3 HOH A 78 979 78 HOH HOH . C 3 HOH A 79 980 79 HOH HOH . C 3 HOH A 80 981 80 HOH HOH . C 3 HOH A 81 982 81 HOH HOH . C 3 HOH A 82 983 82 HOH HOH . C 3 HOH A 83 984 83 HOH HOH . C 3 HOH A 84 985 84 HOH HOH . C 3 HOH A 85 986 85 HOH HOH . C 3 HOH A 86 987 86 HOH HOH . C 3 HOH A 87 988 87 HOH HOH . C 3 HOH A 88 989 88 HOH HOH . C 3 HOH A 89 990 89 HOH HOH . C 3 HOH A 90 991 90 HOH HOH . C 3 HOH A 91 992 91 HOH HOH . C 3 HOH A 92 993 92 HOH HOH . C 3 HOH A 93 994 93 HOH HOH . C 3 HOH A 94 995 94 HOH HOH . C 3 HOH A 95 996 95 HOH HOH . C 3 HOH A 96 997 96 HOH HOH . C 3 HOH A 97 998 97 HOH HOH . C 3 HOH A 98 999 98 HOH HOH . C 3 HOH A 99 1000 99 HOH HOH . C 3 HOH A 100 1001 100 HOH HOH . C 3 HOH A 101 1002 101 HOH HOH . C 3 HOH A 102 1003 102 HOH HOH . C 3 HOH A 103 1004 103 HOH HOH . C 3 HOH A 104 1005 104 HOH HOH . C 3 HOH A 105 1006 105 HOH HOH . C 3 HOH A 106 1007 106 HOH HOH . C 3 HOH A 107 1008 107 HOH HOH . C 3 HOH A 108 1009 108 HOH HOH . C 3 HOH A 109 1010 109 HOH HOH . C 3 HOH A 110 1011 110 HOH HOH . C 3 HOH A 111 1012 111 HOH HOH . C 3 HOH A 112 1013 112 HOH HOH . C 3 HOH A 113 1014 113 HOH HOH . C 3 HOH A 114 1015 114 HOH HOH . C 3 HOH A 115 1016 115 HOH HOH . C 3 HOH A 116 1017 116 HOH HOH . C 3 HOH A 117 1018 117 HOH HOH . C 3 HOH A 118 1019 118 HOH HOH . C 3 HOH A 119 1020 119 HOH HOH . C 3 HOH A 120 1021 120 HOH HOH . C 3 HOH A 121 1022 121 HOH HOH . C 3 HOH A 122 1023 122 HOH HOH . C 3 HOH A 123 1024 123 HOH HOH . C 3 HOH A 124 1025 124 HOH HOH . C 3 HOH A 125 1026 125 HOH HOH . C 3 HOH A 126 1027 126 HOH HOH . C 3 HOH A 127 1028 127 HOH HOH . C 3 HOH A 128 1029 128 HOH HOH . C 3 HOH A 129 1030 129 HOH HOH . C 3 HOH A 130 1031 130 HOH HOH . C 3 HOH A 131 1032 131 HOH HOH . C 3 HOH A 132 1033 132 HOH HOH . C 3 HOH A 133 1034 134 HOH HOH . C 3 HOH A 134 1035 135 HOH HOH . C 3 HOH A 135 1036 136 HOH HOH . C 3 HOH A 136 1037 137 HOH HOH . C 3 HOH A 137 1038 138 HOH HOH . C 3 HOH A 138 1039 139 HOH HOH . C 3 HOH A 139 1040 140 HOH HOH . C 3 HOH A 140 1041 141 HOH HOH . C 3 HOH A 141 1042 142 HOH HOH . C 3 HOH A 142 1043 143 HOH HOH . C 3 HOH A 143 1044 144 HOH HOH . C 3 HOH A 144 1045 145 HOH HOH . C 3 HOH A 145 1046 146 HOH HOH . C 3 HOH A 146 1047 147 HOH HOH . C 3 HOH A 147 1048 148 HOH HOH . C 3 HOH A 148 1049 149 HOH HOH . C 3 HOH A 149 1050 150 HOH HOH . C 3 HOH A 150 1051 151 HOH HOH . C 3 HOH A 151 1052 152 HOH HOH . C 3 HOH A 152 1053 153 HOH HOH . C 3 HOH A 153 1054 154 HOH HOH . C 3 HOH A 154 1055 155 HOH HOH . C 3 HOH A 155 1056 156 HOH HOH . C 3 HOH A 156 1057 157 HOH HOH . C 3 HOH A 157 1058 158 HOH HOH . C 3 HOH A 158 1059 159 HOH HOH . C 3 HOH A 159 1060 160 HOH HOH . C 3 HOH A 160 1061 161 HOH HOH . C 3 HOH A 161 1062 162 HOH HOH . C 3 HOH A 162 1063 163 HOH HOH . C 3 HOH A 163 1064 164 HOH HOH . C 3 HOH A 164 1065 166 HOH HOH . C 3 HOH A 165 1066 167 HOH HOH . C 3 HOH A 166 1067 168 HOH HOH . C 3 HOH A 167 1068 169 HOH HOH . C 3 HOH A 168 1069 170 HOH HOH . C 3 HOH A 169 1070 171 HOH HOH . C 3 HOH A 170 1071 172 HOH HOH . C 3 HOH A 171 1072 173 HOH HOH . C 3 HOH A 172 1073 174 HOH HOH . C 3 HOH A 173 1074 175 HOH HOH . C 3 HOH A 174 1075 176 HOH HOH . C 3 HOH A 175 1076 177 HOH HOH . C 3 HOH A 176 1077 178 HOH HOH . C 3 HOH A 177 1078 179 HOH HOH . C 3 HOH A 178 1079 180 HOH HOH . C 3 HOH A 179 1080 181 HOH HOH . C 3 HOH A 180 1081 182 HOH HOH . C 3 HOH A 181 1082 183 HOH HOH . C 3 HOH A 182 1083 184 HOH HOH . C 3 HOH A 183 1084 185 HOH HOH . C 3 HOH A 184 1085 186 HOH HOH . C 3 HOH A 185 1086 187 HOH HOH . C 3 HOH A 186 1087 188 HOH HOH . C 3 HOH A 187 1088 189 HOH HOH . C 3 HOH A 188 1089 190 HOH HOH . C 3 HOH A 189 1090 191 HOH HOH . C 3 HOH A 190 1091 192 HOH HOH . C 3 HOH A 191 1092 193 HOH HOH . C 3 HOH A 192 1093 194 HOH HOH . C 3 HOH A 193 1094 195 HOH HOH . C 3 HOH A 194 1095 196 HOH HOH . C 3 HOH A 195 1096 197 HOH HOH . C 3 HOH A 196 1097 198 HOH HOH . C 3 HOH A 197 1098 199 HOH HOH . C 3 HOH A 198 1099 200 HOH HOH . C 3 HOH A 199 1100 201 HOH HOH . C 3 HOH A 200 1101 202 HOH HOH . C 3 HOH A 201 1102 203 HOH HOH . C 3 HOH A 202 1103 204 HOH HOH . C 3 HOH A 203 1104 205 HOH HOH . C 3 HOH A 204 1105 206 HOH HOH . C 3 HOH A 205 1106 207 HOH HOH . C 3 HOH A 206 1107 208 HOH HOH . C 3 HOH A 207 1108 209 HOH HOH . C 3 HOH A 208 1109 210 HOH HOH . C 3 HOH A 209 1110 211 HOH HOH . C 3 HOH A 210 1111 212 HOH HOH . C 3 HOH A 211 1112 213 HOH HOH . C 3 HOH A 212 1113 214 HOH HOH . C 3 HOH A 213 1114 215 HOH HOH . C 3 HOH A 214 1115 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . B 2 51.367 25.412 2.301 0.06 10.38 ? C1 MLA 901 A 1 HETATM 2 O O1A MLA . . . B 2 50.817 25.314 3.509 0.06 0 ? O1A MLA 901 A 1 HETATM 3 O O1B MLA . . . B 2 52.307 26.134 2.128 0.06 5.68 ? O1B MLA 901 A 1 HETATM 4 C C2 MLA . . . B 2 50.793 24.608 1.14 0.06 15.2 ? C2 MLA 901 A 1 HETATM 5 C C3 MLA . . . B 2 51.508 24.884 -0.179 0.06 23.71 ? C3 MLA 901 A 1 HETATM 6 O O3A MLA . . . B 2 52.427 25.692 -0.267 0.06 29.27 ? O3A MLA 901 A 1 HETATM 7 O O3B MLA . . . B 2 51.121 24.232 -1.255 0.06 27.6 ? O3B MLA 901 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 60 _model_server_stats.query_time_ms 4912 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #