data_2Q3V # _model_server_result.job_id ih4lu2yiCPqA1FI5e7DWRQ _model_server_result.datetime_utc '2024-11-05 11:44:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 2Q3V # _exptl.entry_id 2Q3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q3V _cell.length_a 59.785 _cell.length_b 79.079 _cell.length_c 43.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1,2 A,B,C,D,E,F,G,H,I,J 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 59.785 79.079 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 42 A TYR 42 1_555 A N MSE 43 A MSE 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 43 A MSE 43 1_555 A N GLN 44 A GLN 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C GLY 55 A GLY 55 1_555 A N MSE 56 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 56 A MSE 56 1_555 A N ALA 57 A ALA 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale5 A C ILE 79 A ILE 79 1_555 A N MSE 80 A MSE 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 80 A MSE 80 1_555 A N THR 81 A THR 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C LEU 113 A LEU 113 1_555 A N MSE 114 A MSE 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 114 A MSE 114 1_555 A N ALA 115 A ALA 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 B C TYR 42 B TYR 42 1_555 B N MSE 43 B MSE 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 B C MSE 43 B MSE 43 1_555 B N GLN 44 B GLN 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C GLY 55 B GLY 55 1_555 B N MSE 56 B MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 B C MSE 56 B MSE 56 1_555 B N ALA 57 B ALA 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 B C ILE 79 B ILE 79 1_555 B N MSE 80 B MSE 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 B C MSE 80 B MSE 80 1_555 B N THR 81 B THR 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale15 B C LEU 113 B LEU 113 1_555 B N MSE 114 B MSE 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 B C MSE 114 B MSE 114 1_555 B N ALA 115 B ALA 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A O LYS 19 A LYS 19 1_555 C K K . A K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc2 A O LYS 20 A LYS 20 1_555 C K K . A K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.48 ? metalc ? metalc3 A O ARG 22 A ARG 22 1_555 C K K . A K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc4 A O SER 26 A SER 26 3_557 E K K . B K 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc5 A OH TYR 42 A TYR 42 1_555 C K K . A K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? metalc ? metalc6 C K K . A K 301 1_555 J O HOH . B HOH 422 3_547 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc7 C K K . A K 301 1_555 J O HOH . B HOH 432 3_547 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc8 B O SER 26 B SER 26 3_557 E K K . B K 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.257 ? metalc ? metalc9 B O GLU 120 B GLU 120 1_555 E K K . B K 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc10 B OE1 GLU 120 B GLU 120 1_555 E K K . B K 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc11 B OE2 GLU 122 B GLU 122 1_555 E K K . B K 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc12 E K K . B K 300 1_555 J O HOH . B HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 222 n n N O2 NO3 sing 223 n n N O3 NO3 sing 224 n n # _atom_sites.entry_id 2Q3V _atom_sites.fract_transf_matrix[1][1] 0.016727 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 301 301 K K . D 3 NO3 A 1 402 402 NO3 NO3 . E 2 K B 1 300 300 K K . F 3 NO3 B 1 400 400 NO3 NO3 . G 3 NO3 B 1 401 401 NO3 NO3 . H 3 NO3 B 1 403 403 NO3 NO3 . I 4 HOH A 1 403 5 HOH HOH . I 4 HOH A 2 404 6 HOH HOH . I 4 HOH A 3 405 7 HOH HOH . I 4 HOH A 4 406 9 HOH HOH . I 4 HOH A 5 407 10 HOH HOH . I 4 HOH A 6 408 14 HOH HOH . I 4 HOH A 7 409 15 HOH HOH . I 4 HOH A 8 410 16 HOH HOH . I 4 HOH A 9 411 19 HOH HOH . I 4 HOH A 10 412 25 HOH HOH . I 4 HOH A 11 413 26 HOH HOH . I 4 HOH A 12 414 27 HOH HOH . I 4 HOH A 13 415 28 HOH HOH . I 4 HOH A 14 416 29 HOH HOH . I 4 HOH A 15 417 32 HOH HOH . I 4 HOH A 16 418 36 HOH HOH . I 4 HOH A 17 419 39 HOH HOH . I 4 HOH A 18 420 42 HOH HOH . I 4 HOH A 19 421 43 HOH HOH . I 4 HOH A 20 422 45 HOH HOH . I 4 HOH A 21 423 51 HOH HOH . I 4 HOH A 22 424 52 HOH HOH . I 4 HOH A 23 425 53 HOH HOH . I 4 HOH A 24 426 54 HOH HOH . I 4 HOH A 25 427 57 HOH HOH . I 4 HOH A 26 428 58 HOH HOH . I 4 HOH A 27 429 60 HOH HOH . I 4 HOH A 28 430 62 HOH HOH . I 4 HOH A 29 431 64 HOH HOH . I 4 HOH A 30 432 68 HOH HOH . I 4 HOH A 31 433 70 HOH HOH . I 4 HOH A 32 434 71 HOH HOH . I 4 HOH A 33 435 72 HOH HOH . I 4 HOH A 34 436 73 HOH HOH . I 4 HOH A 35 437 74 HOH HOH . I 4 HOH A 36 438 78 HOH HOH . I 4 HOH A 37 439 79 HOH HOH . I 4 HOH A 38 440 81 HOH HOH . I 4 HOH A 39 441 85 HOH HOH . I 4 HOH A 40 442 86 HOH HOH . I 4 HOH A 41 443 92 HOH HOH . I 4 HOH A 42 444 93 HOH HOH . I 4 HOH A 43 445 94 HOH HOH . I 4 HOH A 44 446 98 HOH HOH . I 4 HOH A 45 447 103 HOH HOH . I 4 HOH A 46 448 104 HOH HOH . I 4 HOH A 47 449 105 HOH HOH . I 4 HOH A 48 450 107 HOH HOH . I 4 HOH A 49 451 108 HOH HOH . I 4 HOH A 50 452 110 HOH HOH . I 4 HOH A 51 453 111 HOH HOH . I 4 HOH A 52 454 114 HOH HOH . I 4 HOH A 53 455 115 HOH HOH . I 4 HOH A 54 456 121 HOH HOH . I 4 HOH A 55 457 122 HOH HOH . I 4 HOH A 56 458 124 HOH HOH . I 4 HOH A 57 459 125 HOH HOH . I 4 HOH A 58 460 128 HOH HOH . I 4 HOH A 59 461 129 HOH HOH . I 4 HOH A 60 462 130 HOH HOH . I 4 HOH A 61 463 131 HOH HOH . I 4 HOH A 62 464 134 HOH HOH . I 4 HOH A 63 465 140 HOH HOH . I 4 HOH A 64 466 144 HOH HOH . I 4 HOH A 65 467 146 HOH HOH . I 4 HOH A 66 468 147 HOH HOH . I 4 HOH A 67 469 150 HOH HOH . I 4 HOH A 68 470 151 HOH HOH . I 4 HOH A 69 471 152 HOH HOH . I 4 HOH A 70 472 153 HOH HOH . J 4 HOH B 1 404 1 HOH HOH . J 4 HOH B 2 405 2 HOH HOH . J 4 HOH B 3 406 3 HOH HOH . J 4 HOH B 4 407 4 HOH HOH . J 4 HOH B 5 408 8 HOH HOH . J 4 HOH B 6 409 11 HOH HOH . J 4 HOH B 7 410 12 HOH HOH . J 4 HOH B 8 411 13 HOH HOH . J 4 HOH B 9 412 17 HOH HOH . J 4 HOH B 10 413 18 HOH HOH . J 4 HOH B 11 414 20 HOH HOH . J 4 HOH B 12 415 21 HOH HOH . J 4 HOH B 13 416 22 HOH HOH . J 4 HOH B 14 417 23 HOH HOH . J 4 HOH B 15 418 24 HOH HOH . J 4 HOH B 16 419 30 HOH HOH . J 4 HOH B 17 420 31 HOH HOH . J 4 HOH B 18 421 33 HOH HOH . J 4 HOH B 19 422 34 HOH HOH . J 4 HOH B 20 423 35 HOH HOH . J 4 HOH B 21 424 37 HOH HOH . J 4 HOH B 22 425 38 HOH HOH . J 4 HOH B 23 426 40 HOH HOH . J 4 HOH B 24 427 41 HOH HOH . J 4 HOH B 25 428 44 HOH HOH . J 4 HOH B 26 429 46 HOH HOH . J 4 HOH B 27 430 47 HOH HOH . J 4 HOH B 28 431 48 HOH HOH . J 4 HOH B 29 432 49 HOH HOH . J 4 HOH B 30 433 50 HOH HOH . J 4 HOH B 31 434 55 HOH HOH . J 4 HOH B 32 435 56 HOH HOH . J 4 HOH B 33 436 59 HOH HOH . J 4 HOH B 34 437 61 HOH HOH . J 4 HOH B 35 438 63 HOH HOH . J 4 HOH B 36 439 65 HOH HOH . J 4 HOH B 37 440 66 HOH HOH . J 4 HOH B 38 441 67 HOH HOH . J 4 HOH B 39 442 69 HOH HOH . J 4 HOH B 40 443 75 HOH HOH . J 4 HOH B 41 444 76 HOH HOH . J 4 HOH B 42 445 77 HOH HOH . J 4 HOH B 43 446 80 HOH HOH . J 4 HOH B 44 447 82 HOH HOH . J 4 HOH B 45 448 83 HOH HOH . J 4 HOH B 46 449 84 HOH HOH . J 4 HOH B 47 450 87 HOH HOH . J 4 HOH B 48 451 88 HOH HOH . J 4 HOH B 49 452 89 HOH HOH . J 4 HOH B 50 453 90 HOH HOH . J 4 HOH B 51 454 91 HOH HOH . J 4 HOH B 52 455 95 HOH HOH . J 4 HOH B 53 456 96 HOH HOH . J 4 HOH B 54 457 97 HOH HOH . J 4 HOH B 55 458 99 HOH HOH . J 4 HOH B 56 459 100 HOH HOH . J 4 HOH B 57 460 101 HOH HOH . J 4 HOH B 58 461 102 HOH HOH . J 4 HOH B 59 462 106 HOH HOH . J 4 HOH B 60 463 109 HOH HOH . J 4 HOH B 61 464 112 HOH HOH . J 4 HOH B 62 465 113 HOH HOH . J 4 HOH B 63 466 116 HOH HOH . J 4 HOH B 64 467 117 HOH HOH . J 4 HOH B 65 468 118 HOH HOH . J 4 HOH B 66 469 119 HOH HOH . J 4 HOH B 67 470 120 HOH HOH . J 4 HOH B 68 471 123 HOH HOH . J 4 HOH B 69 472 126 HOH HOH . J 4 HOH B 70 473 127 HOH HOH . J 4 HOH B 71 474 132 HOH HOH . J 4 HOH B 72 475 135 HOH HOH . J 4 HOH B 73 476 136 HOH HOH . J 4 HOH B 74 477 137 HOH HOH . J 4 HOH B 75 478 138 HOH HOH . J 4 HOH B 76 479 139 HOH HOH . J 4 HOH B 77 480 141 HOH HOH . J 4 HOH B 78 481 142 HOH HOH . J 4 HOH B 79 482 143 HOH HOH . J 4 HOH B 80 483 145 HOH HOH . J 4 HOH B 81 484 148 HOH HOH . J 4 HOH B 82 485 149 HOH HOH . J 4 HOH B 83 486 154 HOH HOH . J 4 HOH B 84 487 155 HOH HOH . J 4 HOH B 85 488 156 HOH HOH . J 4 HOH B 86 489 157 HOH HOH . J 4 HOH B 87 490 158 HOH HOH . J 4 HOH B 88 491 159 HOH HOH . J 4 HOH B 89 492 160 HOH HOH . J 4 HOH B 90 493 161 HOH HOH . J 4 HOH B 91 494 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . G 3 30.846 54.391 43.872 0.25 16.8 ? N NO3 401 B 1 HETATM 2 O O1 NO3 . . . G 3 31.023 53.627 44.824 0.25 17.7 ? O1 NO3 401 B 1 HETATM 3 O O2 NO3 . . . G 3 30.877 55.606 44.043 0.25 17.4 ? O2 NO3 401 B 1 HETATM 4 O O3 NO3 . . . G 3 30.635 53.949 42.749 0.25 18.27 ? O3 NO3 401 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 1104 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #