data_2Q54 # _model_server_result.job_id 2nyHrMfa0ru1K-7sbZ-DlA _model_server_result.datetime_utc '2024-11-04 23:09:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q54 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":200}' # _entry.id 2Q54 # _exptl.entry_id 2Q54 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 656.768 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-ACETYL-N-[(1S,3S,4S)-4-({[(5S)-3-(3-ACETYLPHENYL)-2-OXO-1,3-OXAZOLIDIN-5-YL]CARBONYL}AMINO)-1-BENZYL-3-HYDROXY-5-PHENYLPENTYL]-L-VALINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q54 _cell.length_a 50.759 _cell.length_b 58.167 _cell.length_c 61.436 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q54 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C37 H44 N4 O7' _chem_comp.formula_weight 656.768 _chem_comp.id MU1 _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-ACETYL-N-[(1S,3S,4S)-4-({[(5S)-3-(3-ACETYLPHENYL)-2-OXO-1,3-OXAZOLIDIN-5-YL]CARBONYL}AMINO)-1-BENZYL-3-HYDROXY-5-PHENYLPENTYL]-L-VALINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C3 MU1 doub 243 n n C3 N1 MU1 sing 244 n n C3 C2 MU1 sing 245 n n C2 H21A MU1 sing 246 n n C2 H22 MU1 sing 247 n n C2 H23 MU1 sing 248 n n N1 C10 MU1 sing 249 n n N1 HN1 MU1 sing 250 n n C10 C11 MU1 sing 251 n n C10 C13 MU1 sing 252 n n C10 H10 MU1 sing 253 n n C13 C14 MU1 sing 254 n n C13 C15 MU1 sing 255 n n C13 H13 MU1 sing 256 n n C14 H141 MU1 sing 257 n n C14 H142 MU1 sing 258 n n C14 H143 MU1 sing 259 n n C15 H151 MU1 sing 260 n n C15 H152 MU1 sing 261 n n C15 H153 MU1 sing 262 n n C11 N3 MU1 sing 263 n n C11 O2 MU1 doub 264 n n N3 C12 MU1 sing 265 n n N3 HN3 MU1 sing 266 n n C12 C23 MU1 sing 267 n n C12 C22 MU1 sing 268 n n C12 H12 MU1 sing 269 n n C22 C20 MU1 sing 270 n n C22 H221 MU1 sing 271 n n C22 H222 MU1 sing 272 n n C20 C19 MU1 doub 273 n y C20 C21 MU1 sing 274 n y C21 C16 MU1 doub 275 n y C21 H21 MU1 sing 276 n n C16 C17 MU1 sing 277 n y C16 H16 MU1 sing 278 n n C17 C18 MU1 doub 279 n y C17 H17 MU1 sing 280 n n C18 C19 MU1 sing 281 n y C18 H18 MU1 sing 282 n n C19 H19 MU1 sing 283 n n C23 C24 MU1 sing 284 n n C23 H231 MU1 sing 285 n n C23 H232 MU1 sing 286 n n C24 O4 MU1 sing 287 n n C24 C25 MU1 sing 288 n n C24 H24 MU1 sing 289 n n O4 HO4 MU1 sing 290 n n C25 C29 MU1 sing 291 n n C25 N4 MU1 sing 292 n n C25 H25 MU1 sing 293 n n C29 C4 MU1 sing 294 n n C29 H291 MU1 sing 295 n n C29 H292 MU1 sing 296 n n C4 C5 MU1 sing 297 n y C4 C9 MU1 doub 298 n y C5 C6 MU1 doub 299 n y C5 H5 MU1 sing 300 n n C6 C7 MU1 sing 301 n y C6 H6 MU1 sing 302 n n C7 C8 MU1 doub 303 n y C7 H7 MU1 sing 304 n n C8 C9 MU1 sing 305 n y C8 H8 MU1 sing 306 n n C9 H9 MU1 sing 307 n n N4 C26 MU1 sing 308 n n N4 HN4 MU1 sing 309 n n C26 C27 MU1 sing 310 n n C26 O5 MU1 doub 311 n n C27 O28 MU1 sing 312 n n C27 C32 MU1 sing 313 n n C27 H27 MU1 sing 314 n n C32 N31 MU1 sing 315 n n C32 H321 MU1 sing 316 n n C32 H322 MU1 sing 317 n n O28 C30 MU1 sing 318 n n C30 O30 MU1 doub 319 n n C30 N31 MU1 sing 320 n n N31 C33 MU1 sing 321 n n C33 C38 MU1 sing 322 n y C33 C34 MU1 doub 323 n y C38 C37 MU1 doub 324 n y C38 H38 MU1 sing 325 n n C37 C36 MU1 sing 326 n y C37 H37 MU1 sing 327 n n C36 C35 MU1 doub 328 n y C36 H36 MU1 sing 329 n n C34 C35 MU1 sing 330 n y C34 H34 MU1 sing 331 n n C35 C39 MU1 sing 332 n n C39 C40 MU1 sing 333 n n C39 O39 MU1 doub 334 n n C40 H401 MU1 sing 335 n n C40 H402 MU1 sing 336 n n C40 H403 MU1 sing 337 n n # _atom_sites.entry_id 2Q54 _atom_sites.fract_transf_matrix[1][1] 0.019701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 301 301 PO4 PO4 . D 2 PO4 A 1 302 302 PO4 PO4 . E 3 ACT A 1 303 303 ACT ACT . F 3 ACT A 1 304 304 ACT ACT . G 4 MU1 B 1 200 200 MU1 MU1 . H 5 HOH A 1 305 1 HOH HOH . H 5 HOH A 2 306 2 HOH HOH . H 5 HOH A 3 307 3 HOH HOH . H 5 HOH A 4 308 7 HOH HOH . H 5 HOH A 5 309 8 HOH HOH . H 5 HOH A 6 310 9 HOH HOH . H 5 HOH A 7 311 16 HOH HOH . H 5 HOH A 8 312 17 HOH HOH . H 5 HOH A 9 313 19 HOH HOH . H 5 HOH A 10 314 22 HOH HOH . H 5 HOH A 11 315 23 HOH HOH . H 5 HOH A 12 316 24 HOH HOH . H 5 HOH A 13 317 25 HOH HOH . H 5 HOH A 14 318 27 HOH HOH . H 5 HOH A 15 319 28 HOH HOH . H 5 HOH A 16 320 35 HOH HOH . H 5 HOH A 17 321 36 HOH HOH . H 5 HOH A 18 322 37 HOH HOH . H 5 HOH A 19 323 38 HOH HOH . H 5 HOH A 20 324 39 HOH HOH . H 5 HOH A 21 325 41 HOH HOH . H 5 HOH A 22 326 44 HOH HOH . H 5 HOH A 23 327 45 HOH HOH . H 5 HOH A 24 328 46 HOH HOH . H 5 HOH A 25 329 49 HOH HOH . H 5 HOH A 26 330 52 HOH HOH . H 5 HOH A 27 331 54 HOH HOH . H 5 HOH A 28 332 56 HOH HOH . H 5 HOH A 29 333 58 HOH HOH . H 5 HOH A 30 334 59 HOH HOH . H 5 HOH A 31 335 60 HOH HOH . H 5 HOH A 32 336 61 HOH HOH . H 5 HOH A 33 337 62 HOH HOH . H 5 HOH A 34 338 64 HOH HOH . H 5 HOH A 35 339 65 HOH HOH . H 5 HOH A 36 340 67 HOH HOH . H 5 HOH A 37 341 68 HOH HOH . H 5 HOH A 38 342 70 HOH HOH . H 5 HOH A 39 343 73 HOH HOH . H 5 HOH A 40 344 74 HOH HOH . H 5 HOH A 41 345 76 HOH HOH . H 5 HOH A 42 346 77 HOH HOH . H 5 HOH A 43 347 79 HOH HOH . H 5 HOH A 44 348 81 HOH HOH . H 5 HOH A 45 349 82 HOH HOH . H 5 HOH A 46 350 83 HOH HOH . H 5 HOH A 47 351 84 HOH HOH . H 5 HOH A 48 352 85 HOH HOH . H 5 HOH A 49 353 86 HOH HOH . H 5 HOH A 50 354 89 HOH HOH . H 5 HOH A 51 355 90 HOH HOH . H 5 HOH A 52 356 91 HOH HOH . H 5 HOH A 53 357 97 HOH HOH . H 5 HOH A 54 358 99 HOH HOH . H 5 HOH A 55 359 102 HOH HOH . H 5 HOH A 56 360 103 HOH HOH . H 5 HOH A 57 361 107 HOH HOH . H 5 HOH A 58 362 109 HOH HOH . H 5 HOH A 59 363 115 HOH HOH . H 5 HOH A 60 364 116 HOH HOH . H 5 HOH A 61 365 118 HOH HOH . H 5 HOH A 62 366 121 HOH HOH . H 5 HOH A 63 367 122 HOH HOH . H 5 HOH A 64 368 123 HOH HOH . H 5 HOH A 65 369 125 HOH HOH . H 5 HOH A 66 370 126 HOH HOH . H 5 HOH A 67 371 127 HOH HOH . H 5 HOH A 68 372 130 HOH HOH . H 5 HOH A 69 373 132 HOH HOH . H 5 HOH A 70 374 134 HOH HOH . H 5 HOH A 71 375 136 HOH HOH . H 5 HOH A 72 376 137 HOH HOH . H 5 HOH A 73 377 138 HOH HOH . H 5 HOH A 74 378 139 HOH HOH . I 5 HOH B 1 201 4 HOH HOH . I 5 HOH B 2 202 5 HOH HOH . I 5 HOH B 3 203 6 HOH HOH . I 5 HOH B 4 204 10 HOH HOH . I 5 HOH B 5 205 11 HOH HOH . I 5 HOH B 6 206 12 HOH HOH . I 5 HOH B 7 207 13 HOH HOH . I 5 HOH B 8 208 14 HOH HOH . I 5 HOH B 9 209 15 HOH HOH . I 5 HOH B 10 210 18 HOH HOH . I 5 HOH B 11 211 20 HOH HOH . I 5 HOH B 12 212 21 HOH HOH . I 5 HOH B 13 213 26 HOH HOH . I 5 HOH B 14 214 29 HOH HOH . I 5 HOH B 15 215 31 HOH HOH . I 5 HOH B 16 216 32 HOH HOH . I 5 HOH B 17 217 33 HOH HOH . I 5 HOH B 18 218 34 HOH HOH . I 5 HOH B 19 219 40 HOH HOH . I 5 HOH B 20 220 42 HOH HOH . I 5 HOH B 21 221 43 HOH HOH . I 5 HOH B 22 222 47 HOH HOH . I 5 HOH B 23 223 48 HOH HOH . I 5 HOH B 24 224 50 HOH HOH . I 5 HOH B 25 225 51 HOH HOH . I 5 HOH B 26 226 53 HOH HOH . I 5 HOH B 27 227 55 HOH HOH . I 5 HOH B 28 228 57 HOH HOH . I 5 HOH B 29 229 63 HOH HOH . I 5 HOH B 30 230 66 HOH HOH . I 5 HOH B 31 231 69 HOH HOH . I 5 HOH B 32 232 71 HOH HOH . I 5 HOH B 33 233 75 HOH HOH . I 5 HOH B 34 234 78 HOH HOH . I 5 HOH B 35 235 80 HOH HOH . I 5 HOH B 36 236 87 HOH HOH . I 5 HOH B 37 237 88 HOH HOH . I 5 HOH B 38 238 92 HOH HOH . I 5 HOH B 39 239 93 HOH HOH . I 5 HOH B 40 240 94 HOH HOH . I 5 HOH B 41 241 95 HOH HOH . I 5 HOH B 42 242 96 HOH HOH . I 5 HOH B 43 243 98 HOH HOH . I 5 HOH B 44 244 100 HOH HOH . I 5 HOH B 45 245 101 HOH HOH . I 5 HOH B 46 246 104 HOH HOH . I 5 HOH B 47 247 105 HOH HOH . I 5 HOH B 48 248 106 HOH HOH . I 5 HOH B 49 249 108 HOH HOH . I 5 HOH B 50 250 110 HOH HOH . I 5 HOH B 51 251 111 HOH HOH . I 5 HOH B 52 252 113 HOH HOH . I 5 HOH B 53 253 117 HOH HOH . I 5 HOH B 54 254 119 HOH HOH . I 5 HOH B 55 255 120 HOH HOH . I 5 HOH B 56 256 124 HOH HOH . I 5 HOH B 57 257 128 HOH HOH . I 5 HOH B 58 258 129 HOH HOH . I 5 HOH B 59 259 131 HOH HOH . I 5 HOH B 60 260 133 HOH HOH . I 5 HOH B 61 261 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MU1 . . . G 4 21.995 4.103 19.034 1 20.84 ? O1 MU1 200 B 1 HETATM 2 C C3 MU1 . . . G 4 21.914 3.364 19.999 1 21.47 ? C3 MU1 200 B 1 HETATM 3 C C2 MU1 . . . G 4 21.68 3.892 21.388 1 20.64 ? C2 MU1 200 B 1 HETATM 4 N N1 MU1 . . . G 4 22.046 2.039 19.883 1 22.41 ? N1 MU1 200 B 1 HETATM 5 C C10 MU1 . . . G 4 22.364 1.379 18.627 1 22.04 ? C10 MU1 200 B 1 HETATM 6 C C13 MU1 . . . G 4 23.741 0.717 18.688 1 21.45 ? C13 MU1 200 B 1 HETATM 7 C C14 MU1 . . . G 4 24.006 -0.089 17.418 1 21.24 ? C14 MU1 200 B 1 HETATM 8 C C15 MU1 . . . G 4 24.844 1.751 18.938 1 21.91 ? C15 MU1 200 B 1 HETATM 9 C C11 MU1 . . . G 4 21.289 0.383 18.276 1 21.23 ? C11 MU1 200 B 1 HETATM 10 O O2 MU1 . . . G 4 21.246 -0.7 18.838 1 19.69 ? O2 MU1 200 B 1 HETATM 11 N N3 MU1 . . . G 4 20.419 0.813 17.367 1 19.54 ? N3 MU1 200 B 1 HETATM 12 C C12 MU1 . . . G 4 19.195 0.115 16.983 1 21.59 ? C12 MU1 200 B 1 HETATM 13 C C22 MU1 . . . G 4 17.918 0.849 17.421 1 22.59 ? C22 MU1 200 B 1 HETATM 14 C C20 MU1 . . . G 4 18.005 1.372 18.835 1 23.41 ? C20 MU1 200 B 1 HETATM 15 C C21 MU1 . . . G 4 17.793 0.527 19.912 1 24.11 ? C21 MU1 200 B 1 HETATM 16 C C16 MU1 . . . G 4 17.882 1.022 21.213 1 24.44 ? C16 MU1 200 B 1 HETATM 17 C C17 MU1 . . . G 4 18.176 2.366 21.432 1 23.67 ? C17 MU1 200 B 1 HETATM 18 C C18 MU1 . . . G 4 18.376 3.21 20.351 1 23.51 ? C18 MU1 200 B 1 HETATM 19 C C19 MU1 . . . G 4 18.288 2.712 19.056 1 23.46 ? C19 MU1 200 B 1 HETATM 20 C C23 MU1 . . . G 4 19.084 0.023 15.48 1 21.45 ? C23 MU1 200 B 1 HETATM 21 C C24 MU1 . . . G 4 20.324 -0.471 14.769 1 21.49 ? C24 MU1 200 B 1 HETATM 22 O O4 MU1 . . . G 4 20.156 -0.143 13.374 1 22.31 ? O4 MU1 200 B 1 HETATM 23 C C25 MU1 . . . G 4 20.553 -1.974 14.972 1 23.2 ? C25 MU1 200 B 1 HETATM 24 C C29 MU1 . . . G 4 21.894 -2.361 14.346 1 23.24 ? C29 MU1 200 B 1 HETATM 25 C C4 MU1 . . . G 4 22.114 -3.854 14.461 1 24.35 ? C4 MU1 200 B 1 HETATM 26 C C5 MU1 . . . G 4 21.994 -4.677 13.335 1 23.94 ? C5 MU1 200 B 1 HETATM 27 C C6 MU1 . . . G 4 22.185 -6.053 13.449 1 23.98 ? C6 MU1 200 B 1 HETATM 28 C C7 MU1 . . . G 4 22.497 -6.608 14.688 1 23.55 ? C7 MU1 200 B 1 HETATM 29 C C8 MU1 . . . G 4 22.61 -5.784 15.806 1 23.64 ? C8 MU1 200 B 1 HETATM 30 C C9 MU1 . . . G 4 22.418 -4.41 15.699 1 23.81 ? C9 MU1 200 B 1 HETATM 31 N N4 MU1 . . . G 4 19.497 -2.828 14.418 1 20.97 ? N4 MU1 200 B 1 HETATM 32 C C26 MU1 . . . G 4 18.802 -3.736 15.124 1 20.9 ? C26 MU1 200 B 1 HETATM 33 O O5 MU1 . . . G 4 18.842 -3.851 16.345 1 20.39 ? O5 MU1 200 B 1 HETATM 34 C C27 MU1 . . . G 4 17.948 -4.722 14.354 1 20.41 ? C27 MU1 200 B 1 HETATM 35 C C32 MU1 . . . G 4 18.422 -6.151 14.611 1 21.33 ? C32 MU1 200 B 1 HETATM 36 O O28 MU1 . . . G 4 18.025 -4.534 12.935 1 23.66 ? O28 MU1 200 B 1 HETATM 37 C C30 MU1 . . . G 4 18.338 -5.811 12.345 1 20.12 ? C30 MU1 200 B 1 HETATM 38 O O30 MU1 . . . G 4 18.349 -5.964 11.158 1 19.47 ? O30 MU1 200 B 1 HETATM 39 N N31 MU1 . . . G 4 18.566 -6.703 13.279 1 21.95 ? N31 MU1 200 B 1 HETATM 40 C C33 MU1 . . . G 4 18.939 -8.043 13.027 1 20.77 ? C33 MU1 200 B 1 HETATM 41 C C38 MU1 . . . G 4 18.425 -8.749 11.942 1 21.54 ? C38 MU1 200 B 1 HETATM 42 C C37 MU1 . . . G 4 18.812 -10.069 11.719 1 22.52 ? C37 MU1 200 B 1 HETATM 43 C C36 MU1 . . . G 4 19.706 -10.712 12.577 1 21.55 ? C36 MU1 200 B 1 HETATM 44 C C34 MU1 . . . G 4 19.841 -8.696 13.88 1 22.59 ? C34 MU1 200 B 1 HETATM 45 C C35 MU1 . . . G 4 20.232 -10.025 13.668 1 22.07 ? C35 MU1 200 B 1 HETATM 46 C C39 MU1 . . . G 4 21.201 -10.695 14.615 1 22.69 ? C39 MU1 200 B 1 HETATM 47 O O39 MU1 . . . G 4 21.519 -10.141 15.663 1 24.68 ? O39 MU1 200 B 1 HETATM 48 C C40 MU1 . . . G 4 21.77 -12.048 14.284 1 23.43 ? C40 MU1 200 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #