data_2Q54
#
_model_server_result.job_id            '_QCyDJbxBBLWWTVV4n6_xQ' 
_model_server_result.datetime_utc      '2024-11-24 21:36:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2q54 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    2Q54 
#
_exptl.entry_id    2Q54 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     'Synthesized in the laboratory to inhibit the HIV-1 protease' 
_entity.formula_weight              94.971 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Q54 
_cell.length_a            50.759 
_cell.length_b            58.167 
_cell.length_c            61.436 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Q54 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 361 n n 
P O2 PO4 sing 362 n n 
P O3 PO4 sing 363 n n 
P O4 PO4 sing 364 n n 
#
_atom_sites.entry_id                     2Q54 
_atom_sites.fract_transf_matrix[1][1]    0.019701 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017192 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016277 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 301 301 PO4 PO4 . 
D 2 PO4 A 1 302 302 PO4 PO4 . 
E 3 ACT A 1 303 303 ACT ACT . 
F 3 ACT A 1 304 304 ACT ACT . 
G 4 MU1 B 1 200 200 MU1 MU1 . 
H 5 HOH A 1 305 1 HOH HOH . 
H 5 HOH A 2 306 2 HOH HOH . 
H 5 HOH A 3 307 3 HOH HOH . 
H 5 HOH A 4 308 7 HOH HOH . 
H 5 HOH A 5 309 8 HOH HOH . 
H 5 HOH A 6 310 9 HOH HOH . 
H 5 HOH A 7 311 16 HOH HOH . 
H 5 HOH A 8 312 17 HOH HOH . 
H 5 HOH A 9 313 19 HOH HOH . 
H 5 HOH A 10 314 22 HOH HOH . 
H 5 HOH A 11 315 23 HOH HOH . 
H 5 HOH A 12 316 24 HOH HOH . 
H 5 HOH A 13 317 25 HOH HOH . 
H 5 HOH A 14 318 27 HOH HOH . 
H 5 HOH A 15 319 28 HOH HOH . 
H 5 HOH A 16 320 35 HOH HOH . 
H 5 HOH A 17 321 36 HOH HOH . 
H 5 HOH A 18 322 37 HOH HOH . 
H 5 HOH A 19 323 38 HOH HOH . 
H 5 HOH A 20 324 39 HOH HOH . 
H 5 HOH A 21 325 41 HOH HOH . 
H 5 HOH A 22 326 44 HOH HOH . 
H 5 HOH A 23 327 45 HOH HOH . 
H 5 HOH A 24 328 46 HOH HOH . 
H 5 HOH A 25 329 49 HOH HOH . 
H 5 HOH A 26 330 52 HOH HOH . 
H 5 HOH A 27 331 54 HOH HOH . 
H 5 HOH A 28 332 56 HOH HOH . 
H 5 HOH A 29 333 58 HOH HOH . 
H 5 HOH A 30 334 59 HOH HOH . 
H 5 HOH A 31 335 60 HOH HOH . 
H 5 HOH A 32 336 61 HOH HOH . 
H 5 HOH A 33 337 62 HOH HOH . 
H 5 HOH A 34 338 64 HOH HOH . 
H 5 HOH A 35 339 65 HOH HOH . 
H 5 HOH A 36 340 67 HOH HOH . 
H 5 HOH A 37 341 68 HOH HOH . 
H 5 HOH A 38 342 70 HOH HOH . 
H 5 HOH A 39 343 73 HOH HOH . 
H 5 HOH A 40 344 74 HOH HOH . 
H 5 HOH A 41 345 76 HOH HOH . 
H 5 HOH A 42 346 77 HOH HOH . 
H 5 HOH A 43 347 79 HOH HOH . 
H 5 HOH A 44 348 81 HOH HOH . 
H 5 HOH A 45 349 82 HOH HOH . 
H 5 HOH A 46 350 83 HOH HOH . 
H 5 HOH A 47 351 84 HOH HOH . 
H 5 HOH A 48 352 85 HOH HOH . 
H 5 HOH A 49 353 86 HOH HOH . 
H 5 HOH A 50 354 89 HOH HOH . 
H 5 HOH A 51 355 90 HOH HOH . 
H 5 HOH A 52 356 91 HOH HOH . 
H 5 HOH A 53 357 97 HOH HOH . 
H 5 HOH A 54 358 99 HOH HOH . 
H 5 HOH A 55 359 102 HOH HOH . 
H 5 HOH A 56 360 103 HOH HOH . 
H 5 HOH A 57 361 107 HOH HOH . 
H 5 HOH A 58 362 109 HOH HOH . 
H 5 HOH A 59 363 115 HOH HOH . 
H 5 HOH A 60 364 116 HOH HOH . 
H 5 HOH A 61 365 118 HOH HOH . 
H 5 HOH A 62 366 121 HOH HOH . 
H 5 HOH A 63 367 122 HOH HOH . 
H 5 HOH A 64 368 123 HOH HOH . 
H 5 HOH A 65 369 125 HOH HOH . 
H 5 HOH A 66 370 126 HOH HOH . 
H 5 HOH A 67 371 127 HOH HOH . 
H 5 HOH A 68 372 130 HOH HOH . 
H 5 HOH A 69 373 132 HOH HOH . 
H 5 HOH A 70 374 134 HOH HOH . 
H 5 HOH A 71 375 136 HOH HOH . 
H 5 HOH A 72 376 137 HOH HOH . 
H 5 HOH A 73 377 138 HOH HOH . 
H 5 HOH A 74 378 139 HOH HOH . 
I 5 HOH B 1 201 4 HOH HOH . 
I 5 HOH B 2 202 5 HOH HOH . 
I 5 HOH B 3 203 6 HOH HOH . 
I 5 HOH B 4 204 10 HOH HOH . 
I 5 HOH B 5 205 11 HOH HOH . 
I 5 HOH B 6 206 12 HOH HOH . 
I 5 HOH B 7 207 13 HOH HOH . 
I 5 HOH B 8 208 14 HOH HOH . 
I 5 HOH B 9 209 15 HOH HOH . 
I 5 HOH B 10 210 18 HOH HOH . 
I 5 HOH B 11 211 20 HOH HOH . 
I 5 HOH B 12 212 21 HOH HOH . 
I 5 HOH B 13 213 26 HOH HOH . 
I 5 HOH B 14 214 29 HOH HOH . 
I 5 HOH B 15 215 31 HOH HOH . 
I 5 HOH B 16 216 32 HOH HOH . 
I 5 HOH B 17 217 33 HOH HOH . 
I 5 HOH B 18 218 34 HOH HOH . 
I 5 HOH B 19 219 40 HOH HOH . 
I 5 HOH B 20 220 42 HOH HOH . 
I 5 HOH B 21 221 43 HOH HOH . 
I 5 HOH B 22 222 47 HOH HOH . 
I 5 HOH B 23 223 48 HOH HOH . 
I 5 HOH B 24 224 50 HOH HOH . 
I 5 HOH B 25 225 51 HOH HOH . 
I 5 HOH B 26 226 53 HOH HOH . 
I 5 HOH B 27 227 55 HOH HOH . 
I 5 HOH B 28 228 57 HOH HOH . 
I 5 HOH B 29 229 63 HOH HOH . 
I 5 HOH B 30 230 66 HOH HOH . 
I 5 HOH B 31 231 69 HOH HOH . 
I 5 HOH B 32 232 71 HOH HOH . 
I 5 HOH B 33 233 75 HOH HOH . 
I 5 HOH B 34 234 78 HOH HOH . 
I 5 HOH B 35 235 80 HOH HOH . 
I 5 HOH B 36 236 87 HOH HOH . 
I 5 HOH B 37 237 88 HOH HOH . 
I 5 HOH B 38 238 92 HOH HOH . 
I 5 HOH B 39 239 93 HOH HOH . 
I 5 HOH B 40 240 94 HOH HOH . 
I 5 HOH B 41 241 95 HOH HOH . 
I 5 HOH B 42 242 96 HOH HOH . 
I 5 HOH B 43 243 98 HOH HOH . 
I 5 HOH B 44 244 100 HOH HOH . 
I 5 HOH B 45 245 101 HOH HOH . 
I 5 HOH B 46 246 104 HOH HOH . 
I 5 HOH B 47 247 105 HOH HOH . 
I 5 HOH B 48 248 106 HOH HOH . 
I 5 HOH B 49 249 108 HOH HOH . 
I 5 HOH B 50 250 110 HOH HOH . 
I 5 HOH B 51 251 111 HOH HOH . 
I 5 HOH B 52 252 113 HOH HOH . 
I 5 HOH B 53 253 117 HOH HOH . 
I 5 HOH B 54 254 119 HOH HOH . 
I 5 HOH B 55 255 120 HOH HOH . 
I 5 HOH B 56 256 124 HOH HOH . 
I 5 HOH B 57 257 128 HOH HOH . 
I 5 HOH B 58 258 129 HOH HOH . 
I 5 HOH B 59 259 131 HOH HOH . 
I 5 HOH B 60 260 133 HOH HOH . 
I 5 HOH B 61 261 135 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . D 2 45.158 2.606 8.775 1 45 ? P PO4 302 A 1 
HETATM 2 O O1 PO4 . . . D 2 46.192 3.033 7.755 1 44.3 ? O1 PO4 302 A 1 
HETATM 3 O O2 PO4 . . . D 2 44.33 3.794 9.22 1 44.04 ? O2 PO4 302 A 1 
HETATM 4 O O3 PO4 . . . D 2 44.229 1.552 8.202 1 45.25 ? O3 PO4 302 A 1 
HETATM 5 O O4 PO4 . . . D 2 45.912 1.989 9.926 1 45.17 ? O4 PO4 302 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           401 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#