data_2Q55 # _model_server_result.job_id 4iB_Yt_aD3xyUqvZENGS7w _model_server_result.datetime_utc '2024-11-24 20:39:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":200}' # _entry.id 2Q55 # _exptl.entry_id 2Q55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 655.783 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-N-[(1S,2S,4S)-1-BENZYL-2-HYDROXY-4-{[(2S)-3-METHYL-2-(2-OXOTETRAHYDROPYRIMIDIN-1(2H)-YL)BUTANOYL]AMINO}-5-PHENYLPENTYL]-2-OXO-3-PHENYL-1,3-OXAZOLIDINE-5-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q55 _cell.length_a 50.844 _cell.length_b 58.53 _cell.length_c 61.869 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C37 H45 N5 O6' _chem_comp.formula_weight 655.783 _chem_comp.id MU0 _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-N-[(1S,2S,4S)-1-BENZYL-2-HYDROXY-4-{[(2S)-3-METHYL-2-(2-OXOTETRAHYDROPYRIMIDIN-1(2H)-YL)BUTANOYL]AMINO}-5-PHENYLPENTYL]-2-OXO-3-PHENYL-1,3-OXAZOLIDINE-5-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C26 MU0 doub 237 n n C26 C27 MU0 sing 238 n n C26 N4 MU0 sing 239 n n C27 C32 MU0 sing 240 n n C27 O28 MU0 sing 241 n n C27 H27 MU0 sing 242 n n O28 C30 MU0 sing 243 n n C30 N31 MU0 sing 244 n n C30 O30 MU0 doub 245 n n N31 C32 MU0 sing 246 n n N31 C33 MU0 sing 247 n n C32 H321 MU0 sing 248 n n C32 H322 MU0 sing 249 n n C33 C34 MU0 doub 250 n y C33 C38 MU0 sing 251 n y C38 C37 MU0 doub 252 n y C38 H38 MU0 sing 253 n n C37 C36 MU0 sing 254 n y C37 H37 MU0 sing 255 n n C36 C35 MU0 doub 256 n y C36 H36 MU0 sing 257 n n C35 C34 MU0 sing 258 n y C35 H35 MU0 sing 259 n n C34 H34 MU0 sing 260 n n N4 C25 MU0 sing 261 n n N4 HN4 MU0 sing 262 n n C25 C24 MU0 sing 263 n n C25 C29 MU0 sing 264 n n C25 H25 MU0 sing 265 n n C29 C4 MU0 sing 266 n n C29 H291 MU0 sing 267 n n C29 H292 MU0 sing 268 n n C4 C9 MU0 sing 269 n y C4 C5 MU0 doub 270 n y C9 C8 MU0 doub 271 n y C9 H9 MU0 sing 272 n n C8 C7 MU0 sing 273 n y C8 H8 MU0 sing 274 n n C5 C6 MU0 sing 275 n y C5 H5 MU0 sing 276 n n C6 C7 MU0 doub 277 n y C6 H6 MU0 sing 278 n n C7 H7 MU0 sing 279 n n C24 C23 MU0 sing 280 n n C24 O4 MU0 sing 281 n n C24 H24 MU0 sing 282 n n O4 HO4 MU0 sing 283 n n C23 C12 MU0 sing 284 n n C23 H231 MU0 sing 285 n n C23 H232 MU0 sing 286 n n C12 C22 MU0 sing 287 n n C12 N3 MU0 sing 288 n n C12 H12 MU0 sing 289 n n N3 C11 MU0 sing 290 n n N3 HN3 MU0 sing 291 n n C11 O2 MU0 doub 292 n n C11 C10 MU0 sing 293 n n C10 N1 MU0 sing 294 n n C10 C13 MU0 sing 295 n n C10 H10 MU0 sing 296 n n C13 C15 MU0 sing 297 n n C13 C14 MU0 sing 298 n n C13 H13 MU0 sing 299 n n C14 H141 MU0 sing 300 n n C14 H142 MU0 sing 301 n n C14 H143 MU0 sing 302 n n C15 H151 MU0 sing 303 n n C15 H152 MU0 sing 304 n n C15 H153 MU0 sing 305 n n N1 C2 MU0 sing 306 n n N1 C3 MU0 sing 307 n n C2 C39 MU0 sing 308 n n C2 H21A MU0 sing 309 n n C2 H22 MU0 sing 310 n n C39 C1 MU0 sing 311 n n C39 H391 MU0 sing 312 n n C39 H392 MU0 sing 313 n n C3 N2 MU0 sing 314 n n C3 O1 MU0 doub 315 n n N2 C1 MU0 sing 316 n n N2 HN2 MU0 sing 317 n n C1 H11 MU0 sing 318 n n C1 H12A MU0 sing 319 n n C22 C20 MU0 sing 320 n n C22 H221 MU0 sing 321 n n C22 H222 MU0 sing 322 n n C20 C21 MU0 doub 323 n y C20 C19 MU0 sing 324 n y C19 C18 MU0 doub 325 n y C19 H19 MU0 sing 326 n n C18 C17 MU0 sing 327 n y C18 H18 MU0 sing 328 n n C17 C16 MU0 doub 329 n y C17 H17 MU0 sing 330 n n C16 C21 MU0 sing 331 n y C16 H16 MU0 sing 332 n n C21 H21 MU0 sing 333 n n # _atom_sites.entry_id 2Q55 _atom_sites.fract_transf_matrix[1][1] 0.019668 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 201 201 PO4 PO4 . D 2 PO4 A 1 202 202 PO4 PO4 . E 3 MU0 B 1 200 200 MU0 MU0 . F 4 HOH A 1 203 1 HOH HOH . F 4 HOH A 2 204 3 HOH HOH . F 4 HOH A 3 205 4 HOH HOH . F 4 HOH A 4 206 5 HOH HOH . F 4 HOH A 5 207 8 HOH HOH . F 4 HOH A 6 208 9 HOH HOH . F 4 HOH A 7 209 11 HOH HOH . F 4 HOH A 8 210 13 HOH HOH . F 4 HOH A 9 211 14 HOH HOH . F 4 HOH A 10 212 17 HOH HOH . F 4 HOH A 11 213 19 HOH HOH . F 4 HOH A 12 214 21 HOH HOH . F 4 HOH A 13 215 24 HOH HOH . F 4 HOH A 14 216 26 HOH HOH . F 4 HOH A 15 217 29 HOH HOH . F 4 HOH A 16 218 32 HOH HOH . F 4 HOH A 17 219 34 HOH HOH . F 4 HOH A 18 220 38 HOH HOH . F 4 HOH A 19 221 41 HOH HOH . F 4 HOH A 20 222 42 HOH HOH . F 4 HOH A 21 223 43 HOH HOH . F 4 HOH A 22 224 45 HOH HOH . F 4 HOH A 23 225 46 HOH HOH . F 4 HOH A 24 226 50 HOH HOH . F 4 HOH A 25 227 53 HOH HOH . F 4 HOH A 26 228 54 HOH HOH . F 4 HOH A 27 229 55 HOH HOH . F 4 HOH A 28 230 56 HOH HOH . F 4 HOH A 29 231 57 HOH HOH . F 4 HOH A 30 232 59 HOH HOH . F 4 HOH A 31 233 60 HOH HOH . F 4 HOH A 32 234 61 HOH HOH . F 4 HOH A 33 235 64 HOH HOH . F 4 HOH A 34 236 65 HOH HOH . F 4 HOH A 35 237 67 HOH HOH . F 4 HOH A 36 238 68 HOH HOH . F 4 HOH A 37 239 72 HOH HOH . F 4 HOH A 38 240 73 HOH HOH . F 4 HOH A 39 241 74 HOH HOH . F 4 HOH A 40 242 75 HOH HOH . F 4 HOH A 41 243 76 HOH HOH . F 4 HOH A 42 244 77 HOH HOH . F 4 HOH A 43 245 78 HOH HOH . F 4 HOH A 44 246 79 HOH HOH . F 4 HOH A 45 247 81 HOH HOH . F 4 HOH A 46 248 84 HOH HOH . F 4 HOH A 47 249 86 HOH HOH . F 4 HOH A 48 250 87 HOH HOH . F 4 HOH A 49 251 88 HOH HOH . F 4 HOH A 50 252 90 HOH HOH . F 4 HOH A 51 253 91 HOH HOH . F 4 HOH A 52 254 92 HOH HOH . F 4 HOH A 53 255 93 HOH HOH . F 4 HOH A 54 256 95 HOH HOH . F 4 HOH A 55 257 98 HOH HOH . F 4 HOH A 56 258 99 HOH HOH . F 4 HOH A 57 259 100 HOH HOH . F 4 HOH A 58 260 101 HOH HOH . F 4 HOH A 59 261 102 HOH HOH . F 4 HOH A 60 262 103 HOH HOH . F 4 HOH A 61 263 107 HOH HOH . F 4 HOH A 62 264 110 HOH HOH . F 4 HOH A 63 265 111 HOH HOH . F 4 HOH A 64 266 112 HOH HOH . F 4 HOH A 65 267 115 HOH HOH . F 4 HOH A 66 268 116 HOH HOH . F 4 HOH A 67 269 117 HOH HOH . F 4 HOH A 68 270 120 HOH HOH . F 4 HOH A 69 271 123 HOH HOH . F 4 HOH A 70 272 124 HOH HOH . F 4 HOH A 71 273 125 HOH HOH . F 4 HOH A 72 274 132 HOH HOH . F 4 HOH A 73 275 133 HOH HOH . F 4 HOH A 74 276 134 HOH HOH . F 4 HOH A 75 277 135 HOH HOH . F 4 HOH A 76 278 136 HOH HOH . G 4 HOH B 1 201 2 HOH HOH . G 4 HOH B 2 202 6 HOH HOH . G 4 HOH B 3 203 7 HOH HOH . G 4 HOH B 4 204 10 HOH HOH . G 4 HOH B 5 205 12 HOH HOH . G 4 HOH B 6 206 15 HOH HOH . G 4 HOH B 7 207 16 HOH HOH . G 4 HOH B 8 208 18 HOH HOH . G 4 HOH B 9 209 20 HOH HOH . G 4 HOH B 10 210 22 HOH HOH . G 4 HOH B 11 211 23 HOH HOH . G 4 HOH B 12 212 25 HOH HOH . G 4 HOH B 13 213 27 HOH HOH . G 4 HOH B 14 214 28 HOH HOH . G 4 HOH B 15 215 30 HOH HOH . G 4 HOH B 16 216 31 HOH HOH . G 4 HOH B 17 217 33 HOH HOH . G 4 HOH B 18 218 35 HOH HOH . G 4 HOH B 19 219 36 HOH HOH . G 4 HOH B 20 220 37 HOH HOH . G 4 HOH B 21 221 39 HOH HOH . G 4 HOH B 22 222 40 HOH HOH . G 4 HOH B 23 223 44 HOH HOH . G 4 HOH B 24 224 47 HOH HOH . G 4 HOH B 25 225 48 HOH HOH . G 4 HOH B 26 226 49 HOH HOH . G 4 HOH B 27 227 51 HOH HOH . G 4 HOH B 28 228 52 HOH HOH . G 4 HOH B 29 229 58 HOH HOH . G 4 HOH B 30 230 62 HOH HOH . G 4 HOH B 31 231 63 HOH HOH . G 4 HOH B 32 232 66 HOH HOH . G 4 HOH B 33 233 69 HOH HOH . G 4 HOH B 34 234 80 HOH HOH . G 4 HOH B 35 235 82 HOH HOH . G 4 HOH B 36 236 83 HOH HOH . G 4 HOH B 37 237 85 HOH HOH . G 4 HOH B 38 238 89 HOH HOH . G 4 HOH B 39 239 94 HOH HOH . G 4 HOH B 40 240 96 HOH HOH . G 4 HOH B 41 241 97 HOH HOH . G 4 HOH B 42 242 104 HOH HOH . G 4 HOH B 43 243 105 HOH HOH . G 4 HOH B 44 244 106 HOH HOH . G 4 HOH B 45 245 108 HOH HOH . G 4 HOH B 46 246 109 HOH HOH . G 4 HOH B 47 247 113 HOH HOH . G 4 HOH B 48 248 114 HOH HOH . G 4 HOH B 49 249 118 HOH HOH . G 4 HOH B 50 250 119 HOH HOH . G 4 HOH B 51 251 121 HOH HOH . G 4 HOH B 52 252 122 HOH HOH . G 4 HOH B 53 253 126 HOH HOH . G 4 HOH B 54 254 127 HOH HOH . G 4 HOH B 55 255 128 HOH HOH . G 4 HOH B 56 256 129 HOH HOH . G 4 HOH B 57 257 130 HOH HOH . G 4 HOH B 58 258 131 HOH HOH . G 4 HOH B 59 259 138 HOH HOH . G 4 HOH B 60 260 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 MU0 . . . E 3 18.651 32.518 13.804 1 18.17 ? O5 MU0 200 B 1 HETATM 2 C C26 MU0 . . . E 3 18.323 32.36 14.986 1 20.15 ? C26 MU0 200 B 1 HETATM 3 C C27 MU0 . . . E 3 17.002 32.958 15.455 1 21.69 ? C27 MU0 200 B 1 HETATM 4 O O28 MU0 . . . E 3 16.583 32.576 16.784 1 23.23 ? O28 MU0 200 B 1 HETATM 5 C C30 MU0 . . . E 3 15.992 33.753 17.375 1 22.73 ? C30 MU0 200 B 1 HETATM 6 O O30 MU0 . . . E 3 15.365 33.759 18.422 1 20.75 ? O30 MU0 200 B 1 HETATM 7 N N31 MU0 . . . E 3 16.238 34.804 16.612 1 24.66 ? N31 MU0 200 B 1 HETATM 8 C C32 MU0 . . . E 3 17.021 34.492 15.425 1 23.38 ? C32 MU0 200 B 1 HETATM 9 C C33 MU0 . . . E 3 15.924 36.113 17.029 1 24.47 ? C33 MU0 200 B 1 HETATM 10 C C38 MU0 . . . E 3 14.634 36.435 17.436 1 24.66 ? C38 MU0 200 B 1 HETATM 11 C C37 MU0 . . . E 3 14.341 37.728 17.856 1 25.23 ? C37 MU0 200 B 1 HETATM 12 C C36 MU0 . . . E 3 15.331 38.699 17.882 1 24.73 ? C36 MU0 200 B 1 HETATM 13 C C35 MU0 . . . E 3 16.619 38.375 17.485 1 24.96 ? C35 MU0 200 B 1 HETATM 14 C C34 MU0 . . . E 3 16.913 37.086 17.058 1 24.7 ? C34 MU0 200 B 1 HETATM 15 N N4 MU0 . . . E 3 19.072 31.651 15.842 1 16.04 ? N4 MU0 200 B 1 HETATM 16 C C25 MU0 . . . E 3 20.274 30.942 15.4 1 16.39 ? C25 MU0 200 B 1 HETATM 17 C C29 MU0 . . . E 3 21.518 31.437 16.138 1 17.35 ? C29 MU0 200 B 1 HETATM 18 C C4 MU0 . . . E 3 21.752 32.899 15.876 1 17.26 ? C4 MU0 200 B 1 HETATM 19 C C9 MU0 . . . E 3 22.198 33.311 14.626 1 16.86 ? C9 MU0 200 B 1 HETATM 20 C C8 MU0 . . . E 3 22.414 34.655 14.387 1 16.77 ? C8 MU0 200 B 1 HETATM 21 C C5 MU0 . . . E 3 21.52 33.844 16.884 1 17.89 ? C5 MU0 200 B 1 HETATM 22 C C6 MU0 . . . E 3 21.737 35.2 16.638 1 18.12 ? C6 MU0 200 B 1 HETATM 23 C C7 MU0 . . . E 3 22.183 35.604 15.386 1 17.09 ? C7 MU0 200 B 1 HETATM 24 C C24 MU0 . . . E 3 20.134 29.43 15.603 1 16.59 ? C24 MU0 200 B 1 HETATM 25 O O4 MU0 . . . E 3 19.917 29.13 16.989 1 16.15 ? O4 MU0 200 B 1 HETATM 26 C C23 MU0 . . . E 3 18.961 28.807 14.848 1 16.86 ? C23 MU0 200 B 1 HETATM 27 C C12 MU0 . . . E 3 19.167 28.647 13.347 1 18.25 ? C12 MU0 200 B 1 HETATM 28 N N3 MU0 . . . E 3 20.456 28.044 13.044 1 18.11 ? N3 MU0 200 B 1 HETATM 29 C C11 MU0 . . . E 3 21.302 28.502 12.114 1 16.94 ? C11 MU0 200 B 1 HETATM 30 O O2 MU0 . . . E 3 21.14 29.508 11.436 1 17.35 ? O2 MU0 200 B 1 HETATM 31 C C10 MU0 . . . E 3 22.504 27.615 11.897 1 17.34 ? C10 MU0 200 B 1 HETATM 32 C C13 MU0 . . . E 3 23.796 28.439 11.92 1 16.18 ? C13 MU0 200 B 1 HETATM 33 C C14 MU0 . . . E 3 23.864 29.234 13.221 1 17.96 ? C14 MU0 200 B 1 HETATM 34 C C15 MU0 . . . E 3 24.999 27.529 11.734 1 16.69 ? C15 MU0 200 B 1 HETATM 35 N N1 MU0 . . . E 3 22.38 26.811 10.658 1 16.69 ? N1 MU0 200 B 1 HETATM 36 C C2 MU0 . . . E 3 22.341 27.559 9.399 1 16.6 ? C2 MU0 200 B 1 HETATM 37 C C39 MU0 . . . E 3 23.026 26.663 8.379 1 16.73 ? C39 MU0 200 B 1 HETATM 38 C C3 MU0 . . . E 3 22.232 25.482 10.76 1 17.8 ? C3 MU0 200 B 1 HETATM 39 O O1 MU0 . . . E 3 22.133 24.937 11.853 1 16.03 ? O1 MU0 200 B 1 HETATM 40 N N2 MU0 . . . E 3 22.163 24.763 9.638 1 16.72 ? N2 MU0 200 B 1 HETATM 41 C C1 MU0 . . . E 3 22.263 25.345 8.312 1 16.52 ? C1 MU0 200 B 1 HETATM 42 C C22 MU0 . . . E 3 18.031 27.742 12.882 1 18.5 ? C22 MU0 200 B 1 HETATM 43 C C20 MU0 . . . E 3 18.05 27.5 11.398 1 19.64 ? C20 MU0 200 B 1 HETATM 44 C C19 MU0 . . . E 3 18.621 26.345 10.876 1 18.23 ? C19 MU0 200 B 1 HETATM 45 C C18 MU0 . . . E 3 18.617 26.136 9.503 1 19.45 ? C18 MU0 200 B 1 HETATM 46 C C17 MU0 . . . E 3 18.034 27.07 8.66 1 19.11 ? C17 MU0 200 B 1 HETATM 47 C C16 MU0 . . . E 3 17.452 28.21 9.192 1 20.05 ? C16 MU0 200 B 1 HETATM 48 C C21 MU0 . . . E 3 17.466 28.427 10.562 1 18.27 ? C21 MU0 200 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #