data_2Q5G
#
_model_server_result.job_id            04INHwYaYtQDwT4qderrWw 
_model_server_result.datetime_utc      '2024-12-27 17:32:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2q5g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    2Q5G 
#
_exptl.entry_id    2Q5G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              592.628 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(7-{[2-(3-MORPHOLIN-4-YLPROP-1-YN-1-YL)-6-{[4-(TRIFLUOROMETHYL)PHENYL]ETHYNYL}PYRIDIN-4-YL]THIO}-2,3-DIHYDRO-1H-INDEN- 4-YL)OXY]ACETIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.05 
_cell.angle_gamma         90 
_cell.entry_id            2Q5G 
_cell.length_a            112.577 
_cell.length_b            65.603 
_cell.length_c            101.149 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Q5G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
A,B,C,D 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -56.63496 0 83.80693 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C32 H27 F3 N2 O4 S' 
_chem_comp.formula_weight    592.628 
_chem_comp.id                1FA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(7-{[2-(3-MORPHOLIN-4-YLPROP-1-YN-1-YL)-6-{[4-(TRIFLUOROMETHYL)PHENYL]ETHYNYL}PYRIDIN-4-YL]THIO}-2,3-DIHYDRO-1H-INDEN- 4-YL)OXY]ACETIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '{7-[2-(3-MORPHOLIN-4-YL-PROP-1-YNYL)-6-(4-TRIFLUOROMETHYL-PHENYLETHYNYL) -PYRIDIN-4-YLSULFANYL]-INDAN-4-YLOXY}-ACETIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F25 C24 1FA sing 1 n n 
C24 C21 1FA sing 2 n n 
C24 F26 1FA sing 3 n n 
C24 F27 1FA sing 4 n n 
C21 C22 1FA doub 5 n y 
C21 C20 1FA sing 6 n y 
C22 C23 1FA sing 7 n y 
C22 H22 1FA sing 8 n n 
C23 C18 1FA doub 9 n y 
C23 H23 1FA sing 10 n n 
C20 C19 1FA doub 11 n y 
C20 H20 1FA sing 12 n n 
C19 C18 1FA sing 13 n y 
C19 H19 1FA sing 14 n n 
C18 C17 1FA sing 15 n n 
C17 C16 1FA trip 16 n n 
C16 C3 1FA sing 17 n n 
C3 N2 1FA sing 18 n y 
C3 C4 1FA doub 19 n y 
C4 C5 1FA sing 20 n y 
C4 H4 1FA sing 21 n n 
N2 C1 1FA doub 22 n y 
C1 C6 1FA sing 23 n y 
C1 C7 1FA sing 24 n n 
C7 C8 1FA trip 25 n n 
C8 C9 1FA sing 26 n n 
C9 N10 1FA sing 27 n n 
C9 H91 1FA sing 28 n n 
C9 H92 1FA sing 29 n n 
N10 C15 1FA sing 30 n n 
N10 C11 1FA sing 31 n n 
C11 C12 1FA sing 32 n n 
C11 H111 1FA sing 33 n n 
C11 H112 1FA sing 34 n n 
C12 O13 1FA sing 35 n n 
C12 H121 1FA sing 36 n n 
C12 H122 1FA sing 37 n n 
O13 C14 1FA sing 38 n n 
C14 C15 1FA sing 39 n n 
C14 H141 1FA sing 40 n n 
C14 H142 1FA sing 41 n n 
C15 H151 1FA sing 42 n n 
C15 H152 1FA sing 43 n n 
C6 C5 1FA doub 44 n y 
C6 H6 1FA sing 45 n n 
C5 S28 1FA sing 46 n n 
S28 C29 1FA sing 47 n n 
C29 C30 1FA doub 48 n y 
C29 C34 1FA sing 49 n y 
C30 C31 1FA sing 50 n y 
C30 H30 1FA sing 51 n n 
C31 C32 1FA doub 52 n y 
C31 H31 1FA sing 53 n n 
C34 C35 1FA sing 54 n n 
C34 C33 1FA doub 55 n y 
C35 C36 1FA sing 56 n n 
C35 H351 1FA sing 57 n n 
C35 H352 1FA sing 58 n n 
C36 C37 1FA sing 59 n n 
C36 H361 1FA sing 60 n n 
C36 H362 1FA sing 61 n n 
C37 C33 1FA sing 62 n n 
C37 H371 1FA sing 63 n n 
C37 H372 1FA sing 64 n n 
C33 C32 1FA sing 65 n y 
C32 O38 1FA sing 66 n n 
O38 C39 1FA sing 67 n n 
C39 C40 1FA sing 68 n n 
C39 H391 1FA sing 69 n n 
C39 H392 1FA sing 70 n n 
C40 O42 1FA doub 71 n n 
C40 O41 1FA sing 72 n n 
O41 HO41 1FA sing 73 n n 
#
_atom_sites.entry_id                     2Q5G 
_atom_sites.fract_transf_matrix[1][1]    0.008883 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006003 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015243 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011932 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1FA A 1 501 501 1FA 1FA . 
D 2 1FA B 1 502 502 1FA 1FA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F25 1FA . . . C 2 -11.006 -6.079 43.063 1 45.26 ? F25 1FA 501 A 1 
HETATM 2 C C24 1FA . . . C 2 -11.953 -6.473 42.245 1 45.34 ? C24 1FA 501 A 1 
HETATM 3 F F27 1FA . . . C 2 -13.12 -5.902 42.526 1 45.02 ? F27 1FA 501 A 1 
HETATM 4 F F26 1FA . . . C 2 -12.048 -7.774 42.475 1 45.64 ? F26 1FA 501 A 1 
HETATM 5 C C21 1FA . . . C 2 -11.499 -6.05 40.856 1 45.22 ? C21 1FA 501 A 1 
HETATM 6 C C22 1FA . . . C 2 -10.762 -6.907 40.04 1 43.97 ? C22 1FA 501 A 1 
HETATM 7 C C23 1FA . . . C 2 -10.342 -6.499 38.78 1 45.1 ? C23 1FA 501 A 1 
HETATM 8 C C20 1FA . . . C 2 -11.785 -4.762 40.396 1 45.05 ? C20 1FA 501 A 1 
HETATM 9 C C19 1FA . . . C 2 -11.356 -4.344 39.132 1 46.38 ? C19 1FA 501 A 1 
HETATM 10 C C18 1FA . . . C 2 -10.63 -5.215 38.312 1 45.6 ? C18 1FA 501 A 1 
HETATM 11 C C17 1FA . . . C 2 -10.227 -4.845 37.14 1 44.84 ? C17 1FA 501 A 1 
HETATM 12 C C16 1FA . . . C 2 -9.924 -4.464 36.05 1 45.06 ? C16 1FA 501 A 1 
HETATM 13 C C3 1FA . . . C 2 -9.594 -3.893 34.927 1 45.19 ? C3 1FA 501 A 1 
HETATM 14 C C4 1FA . . . C 2 -9.709 -4.607 33.729 1 44.61 ? C4 1FA 501 A 1 
HETATM 15 N N2 1FA . . . C 2 -9.173 -2.587 34.898 1 44.23 ? N2 1FA 501 A 1 
HETATM 16 C C1 1FA . . . C 2 -8.851 -1.978 33.717 1 44.37 ? C1 1FA 501 A 1 
HETATM 17 C C7 1FA . . . C 2 -8.453 -0.753 33.674 1 44.63 ? C7 1FA 501 A 1 
HETATM 18 C C8 1FA . . . C 2 -8.074 0.37 33.634 1 45.13 ? C8 1FA 501 A 1 
HETATM 19 C C9 1FA . . . C 2 -7.673 1.608 33.665 1 45.85 ? C9 1FA 501 A 1 
HETATM 20 N N10 1FA . . . C 2 -7.03 2.123 32.444 1 46.41 ? N10 1FA 501 A 1 
HETATM 21 C C11 1FA . . . C 2 -5.592 1.986 32.257 1 46.32 ? C11 1FA 501 A 1 
HETATM 22 C C12 1FA . . . C 2 -5.074 3.424 32.157 1 47.97 ? C12 1FA 501 A 1 
HETATM 23 O O13 1FA . . . C 2 -5.859 4.237 31.252 1 49.47 ? O13 1FA 501 A 1 
HETATM 24 C C14 1FA . . . C 2 -7.277 4.253 31.506 1 47.44 ? C14 1FA 501 A 1 
HETATM 25 C C15 1FA . . . C 2 -7.825 2.829 31.444 1 46.4 ? C15 1FA 501 A 1 
HETATM 26 C C6 1FA . . . C 2 -8.942 -2.67 32.513 1 44.4 ? C6 1FA 501 A 1 
HETATM 27 C C5 1FA . . . C 2 -9.37 -3.986 32.513 1 44.76 ? C5 1FA 501 A 1 
HETATM 28 S S28 1FA . . . C 2 -9.497 -4.799 31.027 1 43.83 ? S28 1FA 501 A 1 
HETATM 29 C C29 1FA . . . C 2 -10.599 -6.057 31.271 1 43.77 ? C29 1FA 501 A 1 
HETATM 30 C C30 1FA . . . C 2 -11.968 -5.916 31.007 1 43.03 ? C30 1FA 501 A 1 
HETATM 31 C C31 1FA . . . C 2 -12.875 -6.96 31.246 1 43.2 ? C31 1FA 501 A 1 
HETATM 32 C C34 1FA . . . C 2 -10.101 -7.341 31.821 1 43.25 ? C34 1FA 501 A 1 
HETATM 33 C C35 1FA . . . C 2 -8.699 -7.721 32.203 1 43.09 ? C35 1FA 501 A 1 
HETATM 34 C C36 1FA . . . C 2 -8.889 -9.241 32.313 1 42.09 ? C36 1FA 501 A 1 
HETATM 35 C C37 1FA . . . C 2 -10.346 -9.621 32.628 1 43.28 ? C37 1FA 501 A 1 
HETATM 36 C C33 1FA . . . C 2 -11.042 -8.417 32.067 1 43.13 ? C33 1FA 501 A 1 
HETATM 37 C C32 1FA . . . C 2 -12.479 -8.218 31.756 1 44.5 ? C32 1FA 501 A 1 
HETATM 38 O O38 1FA . . . C 2 -13.382 -9.245 32.009 1 45.55 ? O38 1FA 501 A 1 
HETATM 39 C C39 1FA . . . C 2 -14.051 -9.996 30.999 1 48.29 ? C39 1FA 501 A 1 
HETATM 40 C C40 1FA . . . C 2 -14.921 -9.044 30.228 1 50.71 ? C40 1FA 501 A 1 
HETATM 41 O O42 1FA . . . C 2 -14.564 -8.639 29.086 1 51.28 ? O42 1FA 501 A 1 
HETATM 42 O O41 1FA . . . C 2 -15.959 -8.683 30.816 1 52.58 ? O41 1FA 501 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           42 
#