data_2Q5K # _model_server_result.job_id dvqXluS_2m_9UIJbyUvFrQ _model_server_result.datetime_utc '2024-11-24 18:19:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 2Q5K # _exptl.entry_id 2Q5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 628.801 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q5K _cell.length_a 51.343 _cell.length_b 58.043 _cell.length_c 61.133 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C37 H48 N4 O5' _chem_comp.formula_weight 628.801 _chem_comp.id AB1 _chem_comp.mon_nstd_flag . _chem_comp.name N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ABT-378;LOPINAVIR # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 AB1 sing 1 n n C1 C37 AB1 sing 2 n n C1 H2 AB1 sing 3 n n C1 H3 AB1 sing 4 n n C2 N1 AB1 sing 5 n n C2 C37 AB1 sing 6 n n C2 H4 AB1 sing 7 n n C2 H5 AB1 sing 8 n n N1 C3 AB1 sing 9 n n N1 C10 AB1 sing 10 n n C3 N2 AB1 sing 11 n n C3 O1 AB1 doub 12 n n N2 H8 AB1 sing 13 n n C4 C5 AB1 doub 14 n y C4 C9 AB1 sing 15 n y C4 C29 AB1 sing 16 n n C5 C6 AB1 sing 17 n y C5 H30 AB1 sing 18 n n C6 C7 AB1 doub 19 n y C6 H31 AB1 sing 20 n n C7 C8 AB1 sing 21 n y C7 H32 AB1 sing 22 n n C8 C9 AB1 doub 23 n y C8 H33 AB1 sing 24 n n C9 H34 AB1 sing 25 n n C10 C11 AB1 sing 26 n n C10 C13 AB1 sing 27 n n C10 H9 AB1 sing 28 n n C11 N3 AB1 sing 29 n n C11 O2 AB1 doub 30 n n N3 C12 AB1 sing 31 n n N3 H15 AB1 sing 32 n n C12 C22 AB1 sing 33 n n C12 C23 AB1 sing 34 n n C12 H16 AB1 sing 35 n n C13 C14 AB1 sing 36 n n C13 C15 AB1 sing 37 n n C13 H10 AB1 sing 38 n n C14 H11 AB1 sing 39 n n C14 H12 AB1 sing 40 n n C14 H47 AB1 sing 41 n n C15 H13 AB1 sing 42 n n C15 H14 AB1 sing 43 n n C15 H48 AB1 sing 44 n n C16 C17 AB1 doub 45 n y C16 C21 AB1 sing 46 n y C16 H20 AB1 sing 47 n n C17 C18 AB1 sing 48 n y C17 H21 AB1 sing 49 n n C18 C19 AB1 doub 50 n y C18 H22 AB1 sing 51 n n C19 C20 AB1 sing 52 n y C19 H23 AB1 sing 53 n n C20 C21 AB1 doub 54 n y C20 C22 AB1 sing 55 n n C21 H19 AB1 sing 56 n n C22 H17 AB1 sing 57 n n C22 H18 AB1 sing 58 n n C23 C24 AB1 sing 59 n n C23 H24 AB1 sing 60 n n C23 H25 AB1 sing 61 n n C24 C25 AB1 sing 62 n n C24 O4 AB1 sing 63 n n C24 H26 AB1 sing 64 n n C25 N4 AB1 sing 65 n n C25 C29 AB1 sing 66 n n C25 H27 AB1 sing 67 n n N4 C26 AB1 sing 68 n n N4 H35 AB1 sing 69 n n C26 C27 AB1 sing 70 n n C26 O5 AB1 doub 71 n n C27 O3 AB1 sing 72 n n C27 H36 AB1 sing 73 n n C27 H37 AB1 sing 74 n n O3 C28 AB1 sing 75 n n C28 C30 AB1 doub 76 n y C28 C34 AB1 sing 77 n y O4 H1 AB1 sing 78 n n C29 H28 AB1 sing 79 n n C29 H29 AB1 sing 80 n n C30 C31 AB1 sing 81 n y C30 C36 AB1 sing 82 n n C31 C32 AB1 doub 83 n y C31 H41 AB1 sing 84 n n C32 C33 AB1 sing 85 n y C32 H42 AB1 sing 86 n n C33 C34 AB1 doub 87 n y C33 H43 AB1 sing 88 n n C34 C35 AB1 sing 89 n n C35 H44 AB1 sing 90 n n C35 H45 AB1 sing 91 n n C35 H46 AB1 sing 92 n n C36 H38 AB1 sing 93 n n C36 H39 AB1 sing 94 n n C36 H40 AB1 sing 95 n n C37 H6 AB1 sing 96 n n C37 H7 AB1 sing 97 n n # _atom_sites.entry_id 2Q5K _atom_sites.fract_transf_matrix[1][1] 0.019477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 203 203 PO4 PO4 . D 2 PO4 A 1 204 204 PO4 PO4 . E 2 PO4 A 1 205 205 PO4 PO4 . F 3 AB1 A 1 201 201 AB1 AB1 . G 2 PO4 B 1 202 202 PO4 PO4 . H 4 HOH A 1 206 2 HOH HOH . H 4 HOH A 2 207 3 HOH HOH . H 4 HOH A 3 208 9 HOH HOH . H 4 HOH A 4 209 10 HOH HOH . H 4 HOH A 5 210 13 HOH HOH . H 4 HOH A 6 211 14 HOH HOH . H 4 HOH A 7 212 16 HOH HOH . H 4 HOH A 8 213 19 HOH HOH . H 4 HOH A 9 214 20 HOH HOH . H 4 HOH A 10 215 24 HOH HOH . H 4 HOH A 11 216 25 HOH HOH . H 4 HOH A 12 217 26 HOH HOH . H 4 HOH A 13 218 28 HOH HOH . H 4 HOH A 14 219 29 HOH HOH . H 4 HOH A 15 220 30 HOH HOH . H 4 HOH A 16 221 33 HOH HOH . H 4 HOH A 17 222 34 HOH HOH . H 4 HOH A 18 223 36 HOH HOH . H 4 HOH A 19 224 37 HOH HOH . H 4 HOH A 20 225 41 HOH HOH . H 4 HOH A 21 226 43 HOH HOH . H 4 HOH A 22 227 45 HOH HOH . H 4 HOH A 23 228 46 HOH HOH . H 4 HOH A 24 229 47 HOH HOH . H 4 HOH A 25 230 48 HOH HOH . H 4 HOH A 26 231 51 HOH HOH . H 4 HOH A 27 232 53 HOH HOH . H 4 HOH A 28 233 54 HOH HOH . H 4 HOH A 29 234 55 HOH HOH . H 4 HOH A 30 235 59 HOH HOH . H 4 HOH A 31 236 60 HOH HOH . H 4 HOH A 32 237 61 HOH HOH . H 4 HOH A 33 238 63 HOH HOH . H 4 HOH A 34 239 64 HOH HOH . H 4 HOH A 35 240 67 HOH HOH . H 4 HOH A 36 241 68 HOH HOH . H 4 HOH A 37 242 71 HOH HOH . H 4 HOH A 38 243 73 HOH HOH . H 4 HOH A 39 244 75 HOH HOH . H 4 HOH A 40 245 77 HOH HOH . H 4 HOH A 41 246 79 HOH HOH . H 4 HOH A 42 247 81 HOH HOH . H 4 HOH A 43 248 82 HOH HOH . H 4 HOH A 44 249 83 HOH HOH . H 4 HOH A 45 250 89 HOH HOH . H 4 HOH A 46 251 90 HOH HOH . H 4 HOH A 47 252 91 HOH HOH . H 4 HOH A 48 253 93 HOH HOH . H 4 HOH A 49 254 94 HOH HOH . H 4 HOH A 50 255 95 HOH HOH . H 4 HOH A 51 256 96 HOH HOH . H 4 HOH A 52 257 98 HOH HOH . H 4 HOH A 53 258 100 HOH HOH . H 4 HOH A 54 259 101 HOH HOH . H 4 HOH A 55 260 102 HOH HOH . H 4 HOH A 56 261 103 HOH HOH . H 4 HOH A 57 262 105 HOH HOH . H 4 HOH A 58 263 118 HOH HOH . I 4 HOH B 1 203 1 HOH HOH . I 4 HOH B 2 204 4 HOH HOH . I 4 HOH B 3 205 5 HOH HOH . I 4 HOH B 4 206 6 HOH HOH . I 4 HOH B 5 207 7 HOH HOH . I 4 HOH B 6 208 11 HOH HOH . I 4 HOH B 7 209 15 HOH HOH . I 4 HOH B 8 210 17 HOH HOH . I 4 HOH B 9 211 18 HOH HOH . I 4 HOH B 10 212 21 HOH HOH . I 4 HOH B 11 213 22 HOH HOH . I 4 HOH B 12 214 23 HOH HOH . I 4 HOH B 13 215 27 HOH HOH . I 4 HOH B 14 216 31 HOH HOH . I 4 HOH B 15 217 32 HOH HOH . I 4 HOH B 16 218 35 HOH HOH . I 4 HOH B 17 219 38 HOH HOH . I 4 HOH B 18 220 39 HOH HOH . I 4 HOH B 19 221 40 HOH HOH . I 4 HOH B 20 222 42 HOH HOH . I 4 HOH B 21 223 44 HOH HOH . I 4 HOH B 22 224 49 HOH HOH . I 4 HOH B 23 225 50 HOH HOH . I 4 HOH B 24 226 52 HOH HOH . I 4 HOH B 25 227 56 HOH HOH . I 4 HOH B 26 228 58 HOH HOH . I 4 HOH B 27 229 62 HOH HOH . I 4 HOH B 28 230 65 HOH HOH . I 4 HOH B 29 231 66 HOH HOH . I 4 HOH B 30 232 69 HOH HOH . I 4 HOH B 31 233 70 HOH HOH . I 4 HOH B 32 234 72 HOH HOH . I 4 HOH B 33 235 80 HOH HOH . I 4 HOH B 34 236 85 HOH HOH . I 4 HOH B 35 237 87 HOH HOH . I 4 HOH B 36 238 88 HOH HOH . I 4 HOH B 37 239 92 HOH HOH . I 4 HOH B 38 240 97 HOH HOH . I 4 HOH B 39 241 99 HOH HOH . I 4 HOH B 40 242 104 HOH HOH . I 4 HOH B 41 243 106 HOH HOH . I 4 HOH B 42 244 107 HOH HOH . I 4 HOH B 43 245 108 HOH HOH . I 4 HOH B 44 246 109 HOH HOH . I 4 HOH B 45 247 110 HOH HOH . I 4 HOH B 46 248 112 HOH HOH . I 4 HOH B 47 249 114 HOH HOH . I 4 HOH B 48 250 115 HOH HOH . I 4 HOH B 49 251 116 HOH HOH . I 4 HOH B 50 252 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AB1 . . . F 3 22.785 24.692 7.674 1 38.03 ? C1 AB1 201 A 1 HETATM 2 C C2 AB1 . . . F 3 22.872 26.96 8.695 1 37.49 ? C2 AB1 201 A 1 HETATM 3 N N1 AB1 . . . F 3 22.843 26.247 9.98 1 37.16 ? N1 AB1 201 A 1 HETATM 4 C C3 AB1 . . . F 3 22.646 24.922 10.112 1 38 ? C3 AB1 201 A 1 HETATM 5 N N2 AB1 . . . F 3 22.575 24.17 9.012 1 36.55 ? N2 AB1 201 A 1 HETATM 6 C C4 AB1 . . . F 3 22.223 32.613 15.128 1 36.95 ? C4 AB1 201 A 1 HETATM 7 C C5 AB1 . . . F 3 22.028 33.487 16.199 1 37.99 ? C5 AB1 201 A 1 HETATM 8 C C6 AB1 . . . F 3 22.216 34.869 16.055 1 37.09 ? C6 AB1 201 A 1 HETATM 9 C C7 AB1 . . . F 3 22.608 35.38 14.831 1 37.74 ? C7 AB1 201 A 1 HETATM 10 C C8 AB1 . . . F 3 22.816 34.502 13.758 1 38.7 ? C8 AB1 201 A 1 HETATM 11 C C9 AB1 . . . F 3 22.624 33.125 13.894 1 38.02 ? C9 AB1 201 A 1 HETATM 12 O O1 AB1 . . . F 3 22.547 24.39 11.214 1 36.7 ? O1 AB1 201 A 1 HETATM 13 C C10 AB1 . . . F 3 22.99 27.102 11.182 1 36.92 ? C10 AB1 201 A 1 HETATM 14 C C11 AB1 . . . F 3 21.767 27.975 11.349 1 36.8 ? C11 AB1 201 A 1 HETATM 15 N N3 AB1 . . . F 3 20.899 27.542 12.266 1 35.98 ? N3 AB1 201 A 1 HETATM 16 C C12 AB1 . . . F 3 19.646 28.215 12.574 1 36.7 ? C12 AB1 201 A 1 HETATM 17 C C13 AB1 . . . F 3 24.325 27.864 11.185 1 37.7 ? C13 AB1 201 A 1 HETATM 18 C C14 AB1 . . . F 3 24.461 28.719 12.449 1 38.37 ? C14 AB1 201 A 1 HETATM 19 C C15 AB1 . . . F 3 25.505 26.894 11.071 1 37.46 ? C15 AB1 201 A 1 HETATM 20 O O2 AB1 . . . F 3 21.584 28.976 10.668 1 35.9 ? O2 AB1 201 A 1 HETATM 21 C C16 AB1 . . . F 3 17.841 27.571 8.378 1 37.87 ? C16 AB1 201 A 1 HETATM 22 C C17 AB1 . . . F 3 18.463 26.414 7.915 1 38.01 ? C17 AB1 201 A 1 HETATM 23 C C18 AB1 . . . F 3 19.092 25.561 8.814 1 37.16 ? C18 AB1 201 A 1 HETATM 24 C C19 AB1 . . . F 3 19.085 25.86 10.169 1 36.9 ? C19 AB1 201 A 1 HETATM 25 C C20 AB1 . . . F 3 18.488 27.037 10.627 1 36.83 ? C20 AB1 201 A 1 HETATM 26 C C21 AB1 . . . F 3 17.854 27.879 9.73 1 38.17 ? C21 AB1 201 A 1 HETATM 27 C C22 AB1 . . . F 3 18.461 27.366 12.098 1 36.86 ? C22 AB1 201 A 1 HETATM 28 C C23 AB1 . . . F 3 19.444 28.437 14.076 1 36.51 ? C23 AB1 201 A 1 HETATM 29 C C24 AB1 . . . F 3 20.61 29.104 14.802 1 37.13 ? C24 AB1 201 A 1 HETATM 30 C C25 AB1 . . . F 3 20.792 30.6 14.502 1 37.84 ? C25 AB1 201 A 1 HETATM 31 N N4 AB1 . . . F 3 19.594 31.366 14.806 1 37.89 ? N4 AB1 201 A 1 HETATM 32 C C26 AB1 . . . F 3 18.779 31.883 13.868 1 38.96 ? C26 AB1 201 A 1 HETATM 33 C C27 AB1 . . . F 3 17.564 32.666 14.313 1 38.41 ? C27 AB1 201 A 1 HETATM 34 O O3 AB1 . . . F 3 17.386 32.689 15.72 1 37.33 ? O3 AB1 201 A 1 HETATM 35 C C28 AB1 . . . F 3 16.648 33.696 16.29 1 37.84 ? C28 AB1 201 A 1 HETATM 36 O O4 AB1 . . . F 3 20.403 28.902 16.212 1 38.97 ? O4 AB1 201 A 1 HETATM 37 C C29 AB1 . . . F 3 21.998 31.123 15.306 1 37.38 ? C29 AB1 201 A 1 HETATM 38 O O5 AB1 . . . F 3 18.935 31.77 12.662 1 38.63 ? O5 AB1 201 A 1 HETATM 39 C C30 AB1 . . . F 3 15.258 33.635 16.276 1 35.51 ? C30 AB1 201 A 1 HETATM 40 C C31 AB1 . . . F 3 14.52 34.665 16.856 1 36.35 ? C31 AB1 201 A 1 HETATM 41 C C32 AB1 . . . F 3 15.156 35.748 17.458 1 36.56 ? C32 AB1 201 A 1 HETATM 42 C C33 AB1 . . . F 3 16.54 35.804 17.471 1 36.79 ? C33 AB1 201 A 1 HETATM 43 C C34 AB1 . . . F 3 17.29 34.773 16.898 1 36.16 ? C34 AB1 201 A 1 HETATM 44 C C35 AB1 . . . F 3 18.799 34.837 16.937 1 36.66 ? C35 AB1 201 A 1 HETATM 45 C C36 AB1 . . . F 3 14.544 32.487 15.61 1 36.26 ? C36 AB1 201 A 1 HETATM 46 C C37 AB1 . . . F 3 23.54 26.014 7.709 1 37.99 ? C37 AB1 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 46 #