data_2Q5K # _model_server_result.job_id BoM0pDs-uxKLNsHGtsSj8g _model_server_result.datetime_utc '2024-11-24 18:28:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":204}' # _entry.id 2Q5K # _exptl.entry_id 2Q5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'Synthesized in the laboratory to inhibit the HIV-1 protease' _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q5K _cell.length_a 51.343 _cell.length_b 58.043 _cell.length_c 61.133 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 357 n n P O2 PO4 sing 358 n n P O3 PO4 sing 359 n n P O4 PO4 sing 360 n n # _atom_sites.entry_id 2Q5K _atom_sites.fract_transf_matrix[1][1] 0.019477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 203 203 PO4 PO4 . D 2 PO4 A 1 204 204 PO4 PO4 . E 2 PO4 A 1 205 205 PO4 PO4 . F 3 AB1 A 1 201 201 AB1 AB1 . G 2 PO4 B 1 202 202 PO4 PO4 . H 4 HOH A 1 206 2 HOH HOH . H 4 HOH A 2 207 3 HOH HOH . H 4 HOH A 3 208 9 HOH HOH . H 4 HOH A 4 209 10 HOH HOH . H 4 HOH A 5 210 13 HOH HOH . H 4 HOH A 6 211 14 HOH HOH . H 4 HOH A 7 212 16 HOH HOH . H 4 HOH A 8 213 19 HOH HOH . H 4 HOH A 9 214 20 HOH HOH . H 4 HOH A 10 215 24 HOH HOH . H 4 HOH A 11 216 25 HOH HOH . H 4 HOH A 12 217 26 HOH HOH . H 4 HOH A 13 218 28 HOH HOH . H 4 HOH A 14 219 29 HOH HOH . H 4 HOH A 15 220 30 HOH HOH . H 4 HOH A 16 221 33 HOH HOH . H 4 HOH A 17 222 34 HOH HOH . H 4 HOH A 18 223 36 HOH HOH . H 4 HOH A 19 224 37 HOH HOH . H 4 HOH A 20 225 41 HOH HOH . H 4 HOH A 21 226 43 HOH HOH . H 4 HOH A 22 227 45 HOH HOH . H 4 HOH A 23 228 46 HOH HOH . H 4 HOH A 24 229 47 HOH HOH . H 4 HOH A 25 230 48 HOH HOH . H 4 HOH A 26 231 51 HOH HOH . H 4 HOH A 27 232 53 HOH HOH . H 4 HOH A 28 233 54 HOH HOH . H 4 HOH A 29 234 55 HOH HOH . H 4 HOH A 30 235 59 HOH HOH . H 4 HOH A 31 236 60 HOH HOH . H 4 HOH A 32 237 61 HOH HOH . H 4 HOH A 33 238 63 HOH HOH . H 4 HOH A 34 239 64 HOH HOH . H 4 HOH A 35 240 67 HOH HOH . H 4 HOH A 36 241 68 HOH HOH . H 4 HOH A 37 242 71 HOH HOH . H 4 HOH A 38 243 73 HOH HOH . H 4 HOH A 39 244 75 HOH HOH . H 4 HOH A 40 245 77 HOH HOH . H 4 HOH A 41 246 79 HOH HOH . H 4 HOH A 42 247 81 HOH HOH . H 4 HOH A 43 248 82 HOH HOH . H 4 HOH A 44 249 83 HOH HOH . H 4 HOH A 45 250 89 HOH HOH . H 4 HOH A 46 251 90 HOH HOH . H 4 HOH A 47 252 91 HOH HOH . H 4 HOH A 48 253 93 HOH HOH . H 4 HOH A 49 254 94 HOH HOH . H 4 HOH A 50 255 95 HOH HOH . H 4 HOH A 51 256 96 HOH HOH . H 4 HOH A 52 257 98 HOH HOH . H 4 HOH A 53 258 100 HOH HOH . H 4 HOH A 54 259 101 HOH HOH . H 4 HOH A 55 260 102 HOH HOH . H 4 HOH A 56 261 103 HOH HOH . H 4 HOH A 57 262 105 HOH HOH . H 4 HOH A 58 263 118 HOH HOH . I 4 HOH B 1 203 1 HOH HOH . I 4 HOH B 2 204 4 HOH HOH . I 4 HOH B 3 205 5 HOH HOH . I 4 HOH B 4 206 6 HOH HOH . I 4 HOH B 5 207 7 HOH HOH . I 4 HOH B 6 208 11 HOH HOH . I 4 HOH B 7 209 15 HOH HOH . I 4 HOH B 8 210 17 HOH HOH . I 4 HOH B 9 211 18 HOH HOH . I 4 HOH B 10 212 21 HOH HOH . I 4 HOH B 11 213 22 HOH HOH . I 4 HOH B 12 214 23 HOH HOH . I 4 HOH B 13 215 27 HOH HOH . I 4 HOH B 14 216 31 HOH HOH . I 4 HOH B 15 217 32 HOH HOH . I 4 HOH B 16 218 35 HOH HOH . I 4 HOH B 17 219 38 HOH HOH . I 4 HOH B 18 220 39 HOH HOH . I 4 HOH B 19 221 40 HOH HOH . I 4 HOH B 20 222 42 HOH HOH . I 4 HOH B 21 223 44 HOH HOH . I 4 HOH B 22 224 49 HOH HOH . I 4 HOH B 23 225 50 HOH HOH . I 4 HOH B 24 226 52 HOH HOH . I 4 HOH B 25 227 56 HOH HOH . I 4 HOH B 26 228 58 HOH HOH . I 4 HOH B 27 229 62 HOH HOH . I 4 HOH B 28 230 65 HOH HOH . I 4 HOH B 29 231 66 HOH HOH . I 4 HOH B 30 232 69 HOH HOH . I 4 HOH B 31 233 70 HOH HOH . I 4 HOH B 32 234 72 HOH HOH . I 4 HOH B 33 235 80 HOH HOH . I 4 HOH B 34 236 85 HOH HOH . I 4 HOH B 35 237 87 HOH HOH . I 4 HOH B 36 238 88 HOH HOH . I 4 HOH B 37 239 92 HOH HOH . I 4 HOH B 38 240 97 HOH HOH . I 4 HOH B 39 241 99 HOH HOH . I 4 HOH B 40 242 104 HOH HOH . I 4 HOH B 41 243 106 HOH HOH . I 4 HOH B 42 244 107 HOH HOH . I 4 HOH B 43 245 108 HOH HOH . I 4 HOH B 44 246 109 HOH HOH . I 4 HOH B 45 247 110 HOH HOH . I 4 HOH B 46 248 112 HOH HOH . I 4 HOH B 47 249 114 HOH HOH . I 4 HOH B 48 250 115 HOH HOH . I 4 HOH B 49 251 116 HOH HOH . I 4 HOH B 50 252 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 37.988 17.021 28.785 1 73.59 ? P PO4 204 A 1 HETATM 2 O O1 PO4 . . . D 2 39.428 17.179 29.228 1 73.39 ? O1 PO4 204 A 1 HETATM 3 O O2 PO4 . . . D 2 37.635 18.19 27.908 1 73.35 ? O2 PO4 204 A 1 HETATM 4 O O3 PO4 . . . D 2 37.833 15.746 27.989 1 73.76 ? O3 PO4 204 A 1 HETATM 5 O O4 PO4 . . . D 2 37.046 16.983 29.968 1 72.86 ? O4 PO4 204 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #