data_2Q6A # _model_server_result.job_id Os3zQyQ0vu-f_Q670vxX1g _model_server_result.datetime_utc '2025-04-02 19:59:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":117}' # _entry.id 2Q6A # _exptl.entry_id 2Q6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q6A _cell.length_a 81.979 _cell.length_b 85.63 _cell.length_c 130.134 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 85.63 130.134 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 63 A THR 63 1_555 C CA CA . A CA 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc2 A O THR 63 A THR 63 4_566 C CA CA . A CA 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc3 A OG1 THR 63 A THR 63 1_555 D NA NA . A NA 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc4 A OG1 THR 63 A THR 63 4_566 D NA NA . A NA 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc5 A O VAL 64 A VAL 64 1_555 C CA CA . A CA 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc6 A O VAL 64 A VAL 64 4_566 C CA CA . A CA 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc7 A O GLY 67 A GLY 67 1_555 F CA CA . A CA 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc8 A O GLY 67 A GLY 67 4_566 F CA CA . A CA 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc9 C CA CA . A CA 115 1_555 B O THR 63 B THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc10 C CA CA . A CA 115 1_555 B O THR 63 B THR 63 4_566 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc11 C CA CA . A CA 115 1_555 B O VAL 64 B VAL 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc12 C CA CA . A CA 115 1_555 B O VAL 64 B VAL 64 4_566 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc13 F CA CA . A CA 118 1_555 B O GLY 67 B GLY 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc14 F CA CA . A CA 118 1_555 B O GLY 67 B GLY 67 4_566 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2Q6A _atom_sites.fract_transf_matrix[1][1] 0.012198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 115 21 CA CA . D 3 NA A 1 116 22 NA NA . E 3 NA A 1 117 23 NA NA . F 2 CA A 1 118 24 CA CA . G 3 NA A 1 119 25 NA NA . H 4 HOH A 1 120 1 HOH HOH . H 4 HOH A 2 121 2 HOH HOH . H 4 HOH A 3 122 3 HOH HOH . H 4 HOH A 4 123 5 HOH HOH . H 4 HOH A 5 124 7 HOH HOH . H 4 HOH A 6 125 8 HOH HOH . H 4 HOH A 7 126 9 HOH HOH . H 4 HOH A 8 127 11 HOH HOH . H 4 HOH A 9 128 12 HOH HOH . H 4 HOH A 10 129 16 HOH HOH . I 4 HOH B 1 115 4 HOH HOH . I 4 HOH B 2 116 6 HOH HOH . I 4 HOH B 3 117 10 HOH HOH . I 4 HOH B 4 118 13 HOH HOH . I 4 HOH B 5 119 14 HOH HOH . I 4 HOH B 6 120 15 HOH HOH . I 4 HOH B 7 121 17 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 26.93 _atom_site.Cartn_y 42.815 _atom_site.Cartn_z 65.067 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 89.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 117 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #