data_2Q6I # _model_server_result.job_id -l1eJ9Kh6jm6q31YxyQhTA _model_server_result.datetime_utc '2024-10-19 11:25:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 2Q6I # _exptl.entry_id 2Q6I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 285.687 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-CHLORO-5'-DEOXYADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Q6I _cell.length_a 111.03 _cell.length_b 111.03 _cell.length_c 93.31 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2,3 A,B,C,D,E,F,G 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 55.515 -96.154801 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 111.03 0 0 4 'crystal symmetry operation' 10_555 -y,-x,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 46.655 5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 111.03 0 46.655 6 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 55.515 -96.154801 46.655 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 Cl N5 O3' _chem_comp.formula_weight 285.687 _chem_comp.id 5CD _chem_comp.mon_nstd_flag . _chem_comp.name "5'-CHLORO-5'-DEOXYADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 5CD sing 1 n y N9 C4 5CD sing 2 n y N9 C1' 5CD sing 3 n n C8 N7 5CD doub 4 n y C8 H8 5CD sing 5 n n N7 C5 5CD sing 6 n y C5 C4 5CD doub 7 n y C5 C6 5CD sing 8 n y C4 N3 5CD sing 9 n y N3 C2 5CD doub 10 n y C2 N1 5CD sing 11 n y C2 H2 5CD sing 12 n n N1 C6 5CD doub 13 n y C6 N6 5CD sing 14 n n N6 H6N1 5CD sing 15 n n N6 H6N2 5CD sing 16 n n O2' C2' 5CD sing 17 n n O2' H2' 5CD sing 18 n n C2' C3' 5CD sing 19 n n C2' C1' 5CD sing 20 n n C2' HA 5CD sing 21 n n C3' O3' 5CD sing 22 n n C3' C4' 5CD sing 23 n n C3' H3' 5CD sing 24 n n O3' HB 5CD sing 25 n n C4' C5' 5CD sing 26 n n C4' O4' 5CD sing 27 n n C4' H4' 5CD sing 28 n n C5' CL 5CD sing 29 n n C5' "H5'1" 5CD sing 30 n n C5' "H5'2" 5CD sing 31 n n O4' C1' 5CD sing 32 n n C1' H1' 5CD sing 33 n n # _atom_sites.entry_id 2Q6I _atom_sites.fract_transf_matrix[1][1] 0.009007 _atom_sites.fract_transf_matrix[1][2] 0.0052 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5CD A 1 500 500 5CD 5CD . C 3 MET A 1 600 600 MET MET . D 4 PEG A 1 601 61 PEG PEG . E 4 PEG A 1 602 62 PEG PEG . F 4 PEG A 1 603 63 PEG PEG . G 5 HOH A 1 604 1 HOH HOH . G 5 HOH A 2 605 2 HOH HOH . G 5 HOH A 3 606 3 HOH HOH . G 5 HOH A 4 607 4 HOH HOH . G 5 HOH A 5 608 5 HOH HOH . G 5 HOH A 6 609 6 HOH HOH . G 5 HOH A 7 610 7 HOH HOH . G 5 HOH A 8 611 8 HOH HOH . G 5 HOH A 9 612 9 HOH HOH . G 5 HOH A 10 613 10 HOH HOH . G 5 HOH A 11 614 11 HOH HOH . G 5 HOH A 12 615 12 HOH HOH . G 5 HOH A 13 616 13 HOH HOH . G 5 HOH A 14 617 14 HOH HOH . G 5 HOH A 15 618 15 HOH HOH . G 5 HOH A 16 619 16 HOH HOH . G 5 HOH A 17 620 17 HOH HOH . G 5 HOH A 18 621 18 HOH HOH . G 5 HOH A 19 622 19 HOH HOH . G 5 HOH A 20 623 20 HOH HOH . G 5 HOH A 21 624 21 HOH HOH . G 5 HOH A 22 625 22 HOH HOH . G 5 HOH A 23 626 23 HOH HOH . G 5 HOH A 24 627 24 HOH HOH . G 5 HOH A 25 628 25 HOH HOH . G 5 HOH A 26 629 26 HOH HOH . G 5 HOH A 27 630 27 HOH HOH . G 5 HOH A 28 631 28 HOH HOH . G 5 HOH A 29 632 29 HOH HOH . G 5 HOH A 30 633 30 HOH HOH . G 5 HOH A 31 634 31 HOH HOH . G 5 HOH A 32 635 32 HOH HOH . G 5 HOH A 33 636 33 HOH HOH . G 5 HOH A 34 637 34 HOH HOH . G 5 HOH A 35 638 35 HOH HOH . G 5 HOH A 36 639 36 HOH HOH . G 5 HOH A 37 640 37 HOH HOH . G 5 HOH A 38 641 38 HOH HOH . G 5 HOH A 39 642 39 HOH HOH . G 5 HOH A 40 643 40 HOH HOH . G 5 HOH A 41 644 41 HOH HOH . G 5 HOH A 42 645 42 HOH HOH . G 5 HOH A 43 646 43 HOH HOH . G 5 HOH A 44 647 44 HOH HOH . G 5 HOH A 45 648 45 HOH HOH . G 5 HOH A 46 649 46 HOH HOH . G 5 HOH A 47 650 47 HOH HOH . G 5 HOH A 48 651 48 HOH HOH . G 5 HOH A 49 652 49 HOH HOH . G 5 HOH A 50 653 50 HOH HOH . G 5 HOH A 51 654 51 HOH HOH . G 5 HOH A 52 655 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 5CD . . . B 2 70.359 -19.879 -5.862 1 14.25 ? N9 5CD 500 A 1 HETATM 2 C C8 5CD . . . B 2 70.595 -21.185 -6.071 1 13.52 ? C8 5CD 500 A 1 HETATM 3 N N7 5CD . . . B 2 71.167 -21.358 -7.284 1 13.16 ? N7 5CD 500 A 1 HETATM 4 C C5 5CD . . . B 2 71.283 -20.134 -7.847 1 13.49 ? C5 5CD 500 A 1 HETATM 5 C C4 5CD . . . B 2 70.779 -19.211 -6.946 1 13.68 ? C4 5CD 500 A 1 HETATM 6 N N3 5CD . . . B 2 70.781 -17.896 -7.266 1 13.54 ? N3 5CD 500 A 1 HETATM 7 C C2 5CD . . . B 2 71.257 -17.47 -8.438 1 13.66 ? C2 5CD 500 A 1 HETATM 8 N N1 5CD . . . B 2 71.747 -18.343 -9.325 1 14.44 ? N1 5CD 500 A 1 HETATM 9 C C6 5CD . . . B 2 71.768 -19.676 -9.067 1 13.64 ? C6 5CD 500 A 1 HETATM 10 N N6 5CD . . . B 2 72.274 -20.539 -9.988 1 12.9 ? N6 5CD 500 A 1 HETATM 11 O O2' 5CD . . . B 2 67.443 -18.546 -4.839 1 15.37 ? O2' 5CD 500 A 1 HETATM 12 C C2' 5CD . . . B 2 68.279 -19.656 -4.501 1 15.35 ? C2' 5CD 500 A 1 HETATM 13 C C3' 5CD . . . B 2 68.123 -20.056 -3.037 1 15.67 ? C3' 5CD 500 A 1 HETATM 14 O O3' 5CD . . . B 2 66.989 -19.444 -2.431 1 14.19 ? O3' 5CD 500 A 1 HETATM 15 C C4' 5CD . . . B 2 69.401 -19.542 -2.397 1 16.51 ? C4' 5CD 500 A 1 HETATM 16 C C5' 5CD . . . B 2 69.819 -20.261 -1.121 1 17.77 ? C5' 5CD 500 A 1 HETATM 17 CL CL 5CD . . . B 2 70.589 -19.093 0.018 1 19.67 ? CL 5CD 500 A 1 HETATM 18 O O4' 5CD . . . B 2 70.369 -19.708 -3.435 1 16.12 ? O4' 5CD 500 A 1 HETATM 19 C C1' 5CD . . . B 2 69.747 -19.267 -4.649 1 14.42 ? C1' 5CD 500 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #