data_2Q6I # _model_server_result.job_id sm5BXcjzd5ZuTaDy-gzXlA _model_server_result.datetime_utc '2024-10-19 11:50:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 2Q6I # _exptl.entry_id 2Q6I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.211 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Q6I _cell.length_a 111.03 _cell.length_b 111.03 _cell.length_c 93.31 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2,3 A,B,C,D,E,F,G 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 55.515 -96.154801 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 111.03 0 0 4 'crystal symmetry operation' 10_555 -y,-x,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 46.655 5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 111.03 0 46.655 6 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 55.515 -96.154801 46.655 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H11 N O2 S' _chem_comp.formula_weight 149.211 _chem_comp.id MET _chem_comp.mon_nstd_flag y _chem_comp.name METHIONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MET sing 251 n n N H MET sing 252 n n N H2 MET sing 253 n n CA C MET sing 254 n n CA CB MET sing 255 n n CA HA MET sing 256 n n C O MET doub 257 n n C OXT MET sing 258 n n CB CG MET sing 259 n n CB HB2 MET sing 260 n n CB HB3 MET sing 261 n n CG SD MET sing 262 n n CG HG2 MET sing 263 n n CG HG3 MET sing 264 n n SD CE MET sing 265 n n CE HE1 MET sing 266 n n CE HE2 MET sing 267 n n CE HE3 MET sing 268 n n OXT HXT MET sing 269 n n # _atom_sites.entry_id 2Q6I _atom_sites.fract_transf_matrix[1][1] 0.009007 _atom_sites.fract_transf_matrix[1][2] 0.0052 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5CD A 1 500 500 5CD 5CD . C 3 MET A 1 600 600 MET MET . D 4 PEG A 1 601 61 PEG PEG . E 4 PEG A 1 602 62 PEG PEG . F 4 PEG A 1 603 63 PEG PEG . G 5 HOH A 1 604 1 HOH HOH . G 5 HOH A 2 605 2 HOH HOH . G 5 HOH A 3 606 3 HOH HOH . G 5 HOH A 4 607 4 HOH HOH . G 5 HOH A 5 608 5 HOH HOH . G 5 HOH A 6 609 6 HOH HOH . G 5 HOH A 7 610 7 HOH HOH . G 5 HOH A 8 611 8 HOH HOH . G 5 HOH A 9 612 9 HOH HOH . G 5 HOH A 10 613 10 HOH HOH . G 5 HOH A 11 614 11 HOH HOH . G 5 HOH A 12 615 12 HOH HOH . G 5 HOH A 13 616 13 HOH HOH . G 5 HOH A 14 617 14 HOH HOH . G 5 HOH A 15 618 15 HOH HOH . G 5 HOH A 16 619 16 HOH HOH . G 5 HOH A 17 620 17 HOH HOH . G 5 HOH A 18 621 18 HOH HOH . G 5 HOH A 19 622 19 HOH HOH . G 5 HOH A 20 623 20 HOH HOH . G 5 HOH A 21 624 21 HOH HOH . G 5 HOH A 22 625 22 HOH HOH . G 5 HOH A 23 626 23 HOH HOH . G 5 HOH A 24 627 24 HOH HOH . G 5 HOH A 25 628 25 HOH HOH . G 5 HOH A 26 629 26 HOH HOH . G 5 HOH A 27 630 27 HOH HOH . G 5 HOH A 28 631 28 HOH HOH . G 5 HOH A 29 632 29 HOH HOH . G 5 HOH A 30 633 30 HOH HOH . G 5 HOH A 31 634 31 HOH HOH . G 5 HOH A 32 635 32 HOH HOH . G 5 HOH A 33 636 33 HOH HOH . G 5 HOH A 34 637 34 HOH HOH . G 5 HOH A 35 638 35 HOH HOH . G 5 HOH A 36 639 36 HOH HOH . G 5 HOH A 37 640 37 HOH HOH . G 5 HOH A 38 641 38 HOH HOH . G 5 HOH A 39 642 39 HOH HOH . G 5 HOH A 40 643 40 HOH HOH . G 5 HOH A 41 644 41 HOH HOH . G 5 HOH A 42 645 42 HOH HOH . G 5 HOH A 43 646 43 HOH HOH . G 5 HOH A 44 647 44 HOH HOH . G 5 HOH A 45 648 45 HOH HOH . G 5 HOH A 46 649 46 HOH HOH . G 5 HOH A 47 650 47 HOH HOH . G 5 HOH A 48 651 48 HOH HOH . G 5 HOH A 49 652 49 HOH HOH . G 5 HOH A 50 653 50 HOH HOH . G 5 HOH A 51 654 51 HOH HOH . G 5 HOH A 52 655 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MET . . . C 3 73.49 -27.149 -1.59 1 62 ? N MET 600 A 1 HETATM 2 C CA MET . . . C 3 72.488 -26.04 -1.665 1 61.88 ? CA MET 600 A 1 HETATM 3 C C MET . . . C 3 71.181 -26.529 -2.251 1 61.81 ? C MET 600 A 1 HETATM 4 O O MET . . . C 3 70.913 -27.728 -2.237 1 62 ? O MET 600 A 1 HETATM 5 C CB MET . . . C 3 73.134 -24.921 -2.464 1 61.85 ? CB MET 600 A 1 HETATM 6 C CG MET . . . C 3 72.539 -23.581 -2.067 1 62.18 ? CG MET 600 A 1 HETATM 7 S SD MET . . . C 3 71.551 -23.002 -3.403 1 63.4 ? SD MET 600 A 1 HETATM 8 C CE MET . . . C 3 72.118 -23.779 -4.882 1 63.13 ? CE MET 600 A 1 HETATM 9 O OXT MET . . . C 3 70.326 -25.789 -2.748 1 61.65 ? OXT MET 600 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #