data_2Q6L # _model_server_result.job_id JkkiEJCltRavPcW6-3G5jQ _model_server_result.datetime_utc '2024-10-19 13:35:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 2Q6L # _exptl.entry_id 2Q6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 285.687 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-CHLORO-5'-DEOXYADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Q6L _cell.length_a 111.08 _cell.length_b 111.08 _cell.length_c 93.36 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2,3 A,B,C,D 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 55.54 -96.198102 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 111.08 0 0 4 'crystal symmetry operation' 10_555 -y,-x,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 46.68 5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 111.08 0 46.68 6 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 55.54 -96.198102 46.68 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 Cl N5 O3' _chem_comp.formula_weight 285.687 _chem_comp.id 5CD _chem_comp.mon_nstd_flag . _chem_comp.name "5'-CHLORO-5'-DEOXYADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 5CD sing 1 n y N9 C4 5CD sing 2 n y N9 C1' 5CD sing 3 n n C8 N7 5CD doub 4 n y C8 H8 5CD sing 5 n n N7 C5 5CD sing 6 n y C5 C4 5CD doub 7 n y C5 C6 5CD sing 8 n y C4 N3 5CD sing 9 n y N3 C2 5CD doub 10 n y C2 N1 5CD sing 11 n y C2 H2 5CD sing 12 n n N1 C6 5CD doub 13 n y C6 N6 5CD sing 14 n n N6 H6N1 5CD sing 15 n n N6 H6N2 5CD sing 16 n n O2' C2' 5CD sing 17 n n O2' H2' 5CD sing 18 n n C2' C3' 5CD sing 19 n n C2' C1' 5CD sing 20 n n C2' HA 5CD sing 21 n n C3' O3' 5CD sing 22 n n C3' C4' 5CD sing 23 n n C3' H3' 5CD sing 24 n n O3' HB 5CD sing 25 n n C4' C5' 5CD sing 26 n n C4' O4' 5CD sing 27 n n C4' H4' 5CD sing 28 n n C5' CL 5CD sing 29 n n C5' "H5'1" 5CD sing 30 n n C5' "H5'2" 5CD sing 31 n n O4' C1' 5CD sing 32 n n C1' H1' 5CD sing 33 n n # _atom_sites.entry_id 2Q6L _atom_sites.fract_transf_matrix[1][1] 0.009003 _atom_sites.fract_transf_matrix[1][2] 0.005198 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5CD A 1 500 500 5CD 5CD . C 3 MET A 1 600 600 MET MET . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 11 HOH HOH . D 4 HOH A 11 611 12 HOH HOH . D 4 HOH A 12 612 13 HOH HOH . D 4 HOH A 13 613 14 HOH HOH . D 4 HOH A 14 614 15 HOH HOH . D 4 HOH A 15 615 16 HOH HOH . D 4 HOH A 16 616 17 HOH HOH . D 4 HOH A 17 617 18 HOH HOH . D 4 HOH A 18 618 19 HOH HOH . D 4 HOH A 19 619 20 HOH HOH . D 4 HOH A 20 620 21 HOH HOH . D 4 HOH A 21 621 22 HOH HOH . D 4 HOH A 22 622 23 HOH HOH . D 4 HOH A 23 623 24 HOH HOH . D 4 HOH A 24 624 25 HOH HOH . D 4 HOH A 25 625 26 HOH HOH . D 4 HOH A 26 626 27 HOH HOH . D 4 HOH A 27 627 29 HOH HOH . D 4 HOH A 28 628 30 HOH HOH . D 4 HOH A 29 629 32 HOH HOH . D 4 HOH A 30 630 33 HOH HOH . D 4 HOH A 31 631 34 HOH HOH . D 4 HOH A 32 632 35 HOH HOH . D 4 HOH A 33 633 36 HOH HOH . D 4 HOH A 34 634 37 HOH HOH . D 4 HOH A 35 635 38 HOH HOH . D 4 HOH A 36 636 40 HOH HOH . D 4 HOH A 37 637 41 HOH HOH . D 4 HOH A 38 638 43 HOH HOH . D 4 HOH A 39 639 46 HOH HOH . D 4 HOH A 40 640 48 HOH HOH . D 4 HOH A 41 641 49 HOH HOH . D 4 HOH A 42 642 50 HOH HOH . D 4 HOH A 43 643 54 HOH HOH . D 4 HOH A 44 644 56 HOH HOH . D 4 HOH A 45 645 59 HOH HOH . D 4 HOH A 46 646 62 HOH HOH . D 4 HOH A 47 647 63 HOH HOH . D 4 HOH A 48 648 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 5CD . . . B 2 70.388 -19.858 -5.729 1 7.06 ? N9 5CD 500 A 1 HETATM 2 C C8 5CD . . . B 2 70.539 -21.097 -6.032 1 6.93 ? C8 5CD 500 A 1 HETATM 3 N N7 5CD . . . B 2 71.09 -21.141 -7.192 1 6.81 ? N7 5CD 500 A 1 HETATM 4 C C5 5CD . . . B 2 71.257 -19.93 -7.648 1 7.05 ? C5 5CD 500 A 1 HETATM 5 C C4 5CD . . . B 2 70.833 -19.121 -6.701 1 6.93 ? C4 5CD 500 A 1 HETATM 6 N N3 5CD . . . B 2 70.908 -17.846 -6.894 1 6.73 ? N3 5CD 500 A 1 HETATM 7 C C2 5CD . . . B 2 71.375 -17.356 -7.965 1 6.8 ? C2 5CD 500 A 1 HETATM 8 N N1 5CD . . . B 2 71.798 -18.107 -8.893 1 7.03 ? N1 5CD 500 A 1 HETATM 9 C C6 5CD . . . B 2 71.765 -19.402 -8.785 1 7.14 ? C6 5CD 500 A 1 HETATM 10 N N6 5CD . . . B 2 72.236 -20.192 -9.745 1 6.88 ? N6 5CD 500 A 1 HETATM 11 O O2' 5CD . . . B 2 67.456 -18.999 -4.397 1 7.73 ? O2' 5CD 500 A 1 HETATM 12 C C2' 5CD . . . B 2 68.473 -19.934 -4.166 1 7.96 ? C2' 5CD 500 A 1 HETATM 13 C C3' 5CD . . . B 2 68.516 -20.27 -2.717 1 8.64 ? C3' 5CD 500 A 1 HETATM 14 O O3' 5CD . . . B 2 67.462 -19.549 -2.165 1 8.97 ? O3' 5CD 500 A 1 HETATM 15 C C4' 5CD . . . B 2 69.791 -19.69 -2.248 1 8.87 ? C4' 5CD 500 A 1 HETATM 16 C C5' 5CD . . . B 2 70.509 -20.394 -1.137 1 9.82 ? C5' 5CD 500 A 1 HETATM 17 CL CL 5CD . . . B 2 71.093 -19.325 0.063 1 11.9 ? CL 5CD 500 A 1 HETATM 18 O O4' 5CD . . . B 2 70.528 -19.792 -3.418 1 8.42 ? O4' 5CD 500 A 1 HETATM 19 C C1' 5CD . . . B 2 69.801 -19.37 -4.497 1 7.38 ? C1' 5CD 500 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #