data_2Q6N
#
_model_server_result.job_id            Aw7w1SJE75aYmJXnwOlWXA 
_model_server_result.datetime_utc      '2024-10-18 05:24:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2q6n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":500}' 
#
_entry.id    2Q6N 
#
_exptl.entry_id    2Q6N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Q6N 
_cell.length_a            140 
_cell.length_b            147.31 
_cell.length_c            238.49 
_cell.Z_PDB               28 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Q6N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,H,I 1 1 
B,J,K 2 1 
C,L,M 3 1 
D,N,O 4 1 
E,P,Q 5 1 
F,R,S 6 1 
G,T,U 7 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 J N N 
? 2 L N N 
? 2 N N N 
? 2 P N N 
? 2 R N N 
? 2 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 417 A CYS 436 1_555 H FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc2 H FE HEM . A HEM 500 1_555 I N3 1CI . A 1CI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc3 B SG CYS 417 B CYS 436 1_555 J FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc4 C SG CYS 417 C CYS 436 1_555 L FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc5 L FE HEM . C HEM 500 1_555 M N3 1CI . C 1CI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc6 D SG CYS 417 D CYS 436 1_555 N FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc7 N FE HEM . D HEM 500 1_555 O N3 1CI . D 1CI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc8 F SG CYS 417 F CYS 436 1_555 R FE HEM . F HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc9 R FE HEM . F HEM 500 1_555 S N3 1CI . F 1CI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc10 G SG CYS 417 G CYS 436 1_555 T FE HEM . G HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc11 T FE HEM . G HEM 500 1_555 U N3 1CI . G 1CI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 149 n n 
CHA C4D HEM doub 150 n n 
CHA HHA HEM sing 151 n n 
CHB C4A HEM sing 152 n n 
CHB C1B HEM doub 153 n n 
CHB HHB HEM sing 154 n n 
CHC C4B HEM sing 155 n n 
CHC C1C HEM doub 156 n n 
CHC HHC HEM sing 157 n n 
CHD C4C HEM doub 158 n n 
CHD C1D HEM sing 159 n n 
CHD HHD HEM sing 160 n n 
C1A C2A HEM doub 161 n y 
C1A NA HEM sing 162 n y 
C2A C3A HEM sing 163 n y 
C2A CAA HEM sing 164 n n 
C3A C4A HEM doub 165 n y 
C3A CMA HEM sing 166 n n 
C4A NA HEM sing 167 n y 
CMA HMA HEM sing 168 n n 
CMA HMAA HEM sing 169 n n 
CMA HMAB HEM sing 170 n n 
CAA CBA HEM sing 171 n n 
CAA HAA HEM sing 172 n n 
CAA HAAA HEM sing 173 n n 
CBA CGA HEM sing 174 n n 
CBA HBA HEM sing 175 n n 
CBA HBAA HEM sing 176 n n 
CGA O1A HEM doub 177 n n 
CGA O2A HEM sing 178 n n 
C1B C2B HEM sing 179 n n 
C1B NB HEM sing 180 n n 
C2B C3B HEM doub 181 n n 
C2B CMB HEM sing 182 n n 
C3B C4B HEM sing 183 n n 
C3B CAB HEM sing 184 n n 
C4B NB HEM doub 185 n n 
CMB HMB HEM sing 186 n n 
CMB HMBA HEM sing 187 n n 
CMB HMBB HEM sing 188 n n 
CAB CBB HEM doub 189 n n 
CAB HAB HEM sing 190 n n 
CBB HBB HEM sing 191 n n 
CBB HBBA HEM sing 192 n n 
C1C C2C HEM sing 193 n y 
C1C NC HEM sing 194 n y 
C2C C3C HEM doub 195 n y 
C2C CMC HEM sing 196 n n 
C3C C4C HEM sing 197 n y 
C3C CAC HEM sing 198 n n 
C4C NC HEM sing 199 n y 
CMC HMC HEM sing 200 n n 
CMC HMCA HEM sing 201 n n 
CMC HMCB HEM sing 202 n n 
CAC CBC HEM doub 203 n n 
CAC HAC HEM sing 204 n n 
CBC HBC HEM sing 205 n n 
CBC HBCA HEM sing 206 n n 
C1D C2D HEM sing 207 n n 
C1D ND HEM doub 208 n n 
C2D C3D HEM doub 209 n n 
C2D CMD HEM sing 210 n n 
C3D C4D HEM sing 211 n n 
C3D CAD HEM sing 212 n n 
C4D ND HEM sing 213 n n 
CMD HMD HEM sing 214 n n 
CMD HMDA HEM sing 215 n n 
CMD HMDB HEM sing 216 n n 
CAD CBD HEM sing 217 n n 
CAD HAD HEM sing 218 n n 
CAD HADA HEM sing 219 n n 
CBD CGD HEM sing 220 n n 
CBD HBD HEM sing 221 n n 
CBD HBDA HEM sing 222 n n 
CGD O1D HEM doub 223 n n 
CGD O2D HEM sing 224 n n 
O2A H2A HEM sing 225 n n 
O2D H2D HEM sing 226 n n 
FE NA HEM sing 227 n n 
FE NB HEM sing 228 n n 
FE NC HEM sing 229 n n 
FE ND HEM sing 230 n n 
#
_atom_sites.entry_id                     2Q6N 
_atom_sites.fract_transf_matrix[1][1]    0.007143 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006788 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004193 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 HEM A 1 500 500 HEM HEM . 
I 3 1CI A 1 501 501 1CI 1CI . 
J 2 HEM B 1 500 500 HEM HEM . 
K 3 1CI B 1 501 501 1CI 1CI . 
L 2 HEM C 1 500 500 HEM HEM . 
M 3 1CI C 1 501 501 1CI 1CI . 
N 2 HEM D 1 500 500 HEM HEM . 
O 3 1CI D 1 501 501 1CI 1CI . 
P 2 HEM E 1 500 500 HEM HEM . 
Q 3 1CI E 1 501 501 1CI 1CI . 
R 2 HEM F 1 500 500 HEM HEM . 
S 3 1CI F 1 501 501 1CI 1CI . 
T 2 HEM G 1 500 500 HEM HEM . 
U 3 1CI G 1 501 501 1CI 1CI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . J 2 120.98 -7.923 8.539 1 78.42 ? CHA HEM 500 B 1 
HETATM 2 C CHB HEM . . . J 2 118.799 -3.729 8.69 1 78.42 ? CHB HEM 500 B 1 
HETATM 3 C CHC HEM . . . J 2 115.732 -5.208 5.433 1 78.42 ? CHC HEM 500 B 1 
HETATM 4 C CHD HEM . . . J 2 117.485 -9.546 5.882 1 78.42 ? CHD HEM 500 B 1 
HETATM 5 C C1A HEM . . . J 2 120.799 -6.573 8.815 1 78.42 ? C1A HEM 500 B 1 
HETATM 6 C C2A HEM . . . J 2 121.51 -5.808 9.758 1 78.42 ? C2A HEM 500 B 1 
HETATM 7 C C3A HEM . . . J 2 120.864 -4.582 9.788 1 78.42 ? C3A HEM 500 B 1 
HETATM 8 C C4A HEM . . . J 2 119.801 -4.67 8.865 1 78.42 ? C4A HEM 500 B 1 
HETATM 9 C CMA HEM . . . J 2 121.224 -3.323 10.669 1 78.42 ? CMA HEM 500 B 1 
HETATM 10 C CAA HEM . . . J 2 122.748 -6.279 10.566 1 78.42 ? CAA HEM 500 B 1 
HETATM 11 C CBA HEM . . . J 2 124.081 -6.016 9.914 1 78.42 ? CBA HEM 500 B 1 
HETATM 12 C CGA HEM . . . J 2 125.312 -6.464 10.693 1 78.42 ? CGA HEM 500 B 1 
HETATM 13 O O1A HEM . . . J 2 125.375 -7.589 11.173 1 78.42 ? O1A HEM 500 B 1 
HETATM 14 O O2A HEM . . . J 2 126.257 -5.712 10.843 1 78.42 ? O2A HEM 500 B 1 
HETATM 15 C C1B HEM . . . J 2 117.719 -3.666 7.805 1 78.42 ? C1B HEM 500 B 1 
HETATM 16 C C2B HEM . . . J 2 116.97 -2.507 7.45 1 78.42 ? C2B HEM 500 B 1 
HETATM 17 C C3B HEM . . . J 2 116.161 -2.923 6.352 1 78.42 ? C3B HEM 500 B 1 
HETATM 18 C C4B HEM . . . J 2 116.497 -4.294 6.151 1 78.42 ? C4B HEM 500 B 1 
HETATM 19 C CMB HEM . . . J 2 117.067 -1.16 8.135 1 78.42 ? CMB HEM 500 B 1 
HETATM 20 C CAB HEM . . . J 2 115.211 -2.189 5.582 1 78.42 ? CAB HEM 500 B 1 
HETATM 21 C CBB HEM . . . J 2 114.266 -1.117 5.965 1 78.42 ? CBB HEM 500 B 1 
HETATM 22 C C1C HEM . . . J 2 115.938 -6.544 5.143 1 78.42 ? C1C HEM 500 B 1 
HETATM 23 C C2C HEM . . . J 2 115.179 -7.304 4.277 1 78.42 ? C2C HEM 500 B 1 
HETATM 24 C C3C HEM . . . J 2 115.674 -8.617 4.376 1 78.42 ? C3C HEM 500 B 1 
HETATM 25 C C4C HEM . . . J 2 116.721 -8.53 5.324 1 78.42 ? C4C HEM 500 B 1 
HETATM 26 C CMC HEM . . . J 2 114.008 -6.798 3.373 1 78.42 ? CMC HEM 500 B 1 
HETATM 27 C CAC HEM . . . J 2 115.311 -9.784 3.754 1 78.42 ? CAC HEM 500 B 1 
HETATM 28 C CBC HEM . . . J 2 115.338 -10.133 2.373 1 78.42 ? CBC HEM 500 B 1 
HETATM 29 C C1D HEM . . . J 2 118.699 -9.472 6.482 1 78.42 ? C1D HEM 500 B 1 
HETATM 30 C C2D HEM . . . J 2 119.559 -10.559 6.713 1 78.42 ? C2D HEM 500 B 1 
HETATM 31 C C3D HEM . . . J 2 120.631 -10.085 7.43 1 78.42 ? C3D HEM 500 B 1 
HETATM 32 C C4D HEM . . . J 2 120.359 -8.713 7.601 1 78.42 ? C4D HEM 500 B 1 
HETATM 33 C CMD HEM . . . J 2 119.359 -12.019 6.255 1 78.42 ? CMD HEM 500 B 1 
HETATM 34 C CAD HEM . . . J 2 121.888 -10.877 7.953 1 78.42 ? CAD HEM 500 B 1 
HETATM 35 C CBD HEM . . . J 2 123.059 -10.873 6.907 1 78.42 ? CBD HEM 500 B 1 
HETATM 36 C CGD HEM . . . J 2 124.385 -11.607 7.24 1 78.42 ? CGD HEM 500 B 1 
HETATM 37 O O1D HEM . . . J 2 125.285 -11.644 6.436 1 78.42 ? O1D HEM 500 B 1 
HETATM 38 O O2D HEM . . . J 2 124.526 -12.166 8.338 1 78.42 ? O2D HEM 500 B 1 
HETATM 39 N NA HEM . . . J 2 119.762 -5.844 8.29 1 78.42 ? NA HEM 500 B 1 
HETATM 40 N NB HEM . . . J 2 117.41 -4.687 7.017 1 78.42 ? NB HEM 500 B 1 
HETATM 41 N NC HEM . . . J 2 116.845 -7.267 5.757 1 78.42 ? NC HEM 500 B 1 
HETATM 42 N ND HEM . . . J 2 119.196 -8.393 7.015 1 78.42 ? ND HEM 500 B 1 
HETATM 43 FE FE HEM . . . J 2 118.321 -6.523 6.98 1 78.42 ? FE HEM 500 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#