data_2Q6O # _model_server_result.job_id PmXJUrtow2AkW-u6cTzOqw _model_server_result.datetime_utc '2024-11-22 08:36:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q6o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 2Q6O # _exptl.entry_id 2Q6O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Q6O _cell.length_a 111.53 _cell.length_b 111.53 _cell.length_c 47.61 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q6O _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS trimeric 3 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PQS trimeric 3 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,2,3 B,E,F,H 2 1 B,E,F,H 3 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 55.765 96.587813 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -55.765 96.587813 0 4 'crystal symmetry operation' 2_775 -y+2,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 111.53 193.175627 0 5 'crystal symmetry operation' 3_575 -x+y,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -111.53 193.175627 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 2Q6O _atom_sites.fract_transf_matrix[1][1] 0.008966 _atom_sites.fract_transf_matrix[1][2] 0.005177 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010353 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 284 1 CL CL . D 3 SAM A 1 500 500 SAM SAM . E 2 CL B 1 284 1 CL CL . F 3 SAM B 1 500 500 SAM SAM . G 4 HOH A 1 501 3 HOH HOH . G 4 HOH A 2 502 4 HOH HOH . G 4 HOH A 3 503 6 HOH HOH . G 4 HOH A 4 504 7 HOH HOH . G 4 HOH A 5 505 13 HOH HOH . G 4 HOH A 6 506 14 HOH HOH . G 4 HOH A 7 507 16 HOH HOH . G 4 HOH A 8 508 17 HOH HOH . G 4 HOH A 9 509 20 HOH HOH . G 4 HOH A 10 510 24 HOH HOH . G 4 HOH A 11 511 25 HOH HOH . G 4 HOH A 12 512 26 HOH HOH . G 4 HOH A 13 513 27 HOH HOH . G 4 HOH A 14 514 28 HOH HOH . G 4 HOH A 15 515 29 HOH HOH . G 4 HOH A 16 516 31 HOH HOH . G 4 HOH A 17 517 33 HOH HOH . G 4 HOH A 18 518 34 HOH HOH . G 4 HOH A 19 519 39 HOH HOH . G 4 HOH A 20 520 42 HOH HOH . G 4 HOH A 21 521 44 HOH HOH . G 4 HOH A 22 522 45 HOH HOH . G 4 HOH A 23 523 46 HOH HOH . G 4 HOH A 24 524 51 HOH HOH . G 4 HOH A 25 525 53 HOH HOH . G 4 HOH A 26 526 54 HOH HOH . G 4 HOH A 27 527 58 HOH HOH . G 4 HOH A 28 528 59 HOH HOH . G 4 HOH A 29 529 60 HOH HOH . G 4 HOH A 30 530 61 HOH HOH . G 4 HOH A 31 531 62 HOH HOH . G 4 HOH A 32 532 66 HOH HOH . G 4 HOH A 33 533 67 HOH HOH . G 4 HOH A 34 534 68 HOH HOH . G 4 HOH A 35 535 70 HOH HOH . G 4 HOH A 36 536 77 HOH HOH . G 4 HOH A 37 537 78 HOH HOH . G 4 HOH A 38 538 79 HOH HOH . G 4 HOH A 39 539 81 HOH HOH . G 4 HOH A 40 540 82 HOH HOH . G 4 HOH A 41 541 86 HOH HOH . G 4 HOH A 42 542 87 HOH HOH . G 4 HOH A 43 543 88 HOH HOH . G 4 HOH A 44 544 89 HOH HOH . G 4 HOH A 45 545 94 HOH HOH . G 4 HOH A 46 546 98 HOH HOH . G 4 HOH A 47 547 99 HOH HOH . G 4 HOH A 48 548 101 HOH HOH . G 4 HOH A 49 549 102 HOH HOH . G 4 HOH A 50 550 104 HOH HOH . G 4 HOH A 51 551 106 HOH HOH . G 4 HOH A 52 552 108 HOH HOH . G 4 HOH A 53 553 112 HOH HOH . G 4 HOH A 54 554 114 HOH HOH . G 4 HOH A 55 555 115 HOH HOH . H 4 HOH B 1 501 1 HOH HOH . H 4 HOH B 2 502 2 HOH HOH . H 4 HOH B 3 503 5 HOH HOH . H 4 HOH B 4 504 8 HOH HOH . H 4 HOH B 5 505 9 HOH HOH . H 4 HOH B 6 506 10 HOH HOH . H 4 HOH B 7 507 11 HOH HOH . H 4 HOH B 8 508 12 HOH HOH . H 4 HOH B 9 509 15 HOH HOH . H 4 HOH B 10 510 18 HOH HOH . H 4 HOH B 11 511 19 HOH HOH . H 4 HOH B 12 512 21 HOH HOH . H 4 HOH B 13 513 22 HOH HOH . H 4 HOH B 14 514 23 HOH HOH . H 4 HOH B 15 515 30 HOH HOH . H 4 HOH B 16 516 32 HOH HOH . H 4 HOH B 17 517 35 HOH HOH . H 4 HOH B 18 518 36 HOH HOH . H 4 HOH B 19 519 37 HOH HOH . H 4 HOH B 20 520 38 HOH HOH . H 4 HOH B 21 521 40 HOH HOH . H 4 HOH B 22 522 41 HOH HOH . H 4 HOH B 23 523 43 HOH HOH . H 4 HOH B 24 524 47 HOH HOH . H 4 HOH B 25 525 48 HOH HOH . H 4 HOH B 26 526 49 HOH HOH . H 4 HOH B 27 527 50 HOH HOH . H 4 HOH B 28 528 52 HOH HOH . H 4 HOH B 29 529 55 HOH HOH . H 4 HOH B 30 530 56 HOH HOH . H 4 HOH B 31 531 57 HOH HOH . H 4 HOH B 32 532 63 HOH HOH . H 4 HOH B 33 533 64 HOH HOH . H 4 HOH B 34 534 65 HOH HOH . H 4 HOH B 35 535 69 HOH HOH . H 4 HOH B 36 536 71 HOH HOH . H 4 HOH B 37 537 72 HOH HOH . H 4 HOH B 38 538 73 HOH HOH . H 4 HOH B 39 539 74 HOH HOH . H 4 HOH B 40 540 75 HOH HOH . H 4 HOH B 41 541 76 HOH HOH . H 4 HOH B 42 542 80 HOH HOH . H 4 HOH B 43 543 83 HOH HOH . H 4 HOH B 44 544 84 HOH HOH . H 4 HOH B 45 545 85 HOH HOH . H 4 HOH B 46 546 90 HOH HOH . H 4 HOH B 47 547 91 HOH HOH . H 4 HOH B 48 548 92 HOH HOH . H 4 HOH B 49 549 93 HOH HOH . H 4 HOH B 50 550 95 HOH HOH . H 4 HOH B 51 551 96 HOH HOH . H 4 HOH B 52 552 97 HOH HOH . H 4 HOH B 53 553 100 HOH HOH . H 4 HOH B 54 554 103 HOH HOH . H 4 HOH B 55 555 105 HOH HOH . H 4 HOH B 56 556 107 HOH HOH . H 4 HOH B 57 557 109 HOH HOH . H 4 HOH B 58 558 110 HOH HOH . H 4 HOH B 59 559 111 HOH HOH . H 4 HOH B 60 560 113 HOH HOH . H 4 HOH B 61 561 116 HOH HOH . H 4 HOH B 62 562 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . D 3 -14.383 69.451 3.373 1 18.96 ? N SAM 500 A 1 HETATM 2 C CA SAM . . . D 3 -15.219 70.564 2.842 1 18.24 ? CA SAM 500 A 1 HETATM 3 C C SAM . . . D 3 -16.512 70.067 2.249 1 17.62 ? C SAM 500 A 1 HETATM 4 O O SAM . . . D 3 -17.514 70.772 2.198 1 16.91 ? O SAM 500 A 1 HETATM 5 O OXT SAM . . . D 3 -16.627 68.95 1.794 1 16.78 ? OXT SAM 500 A 1 HETATM 6 C CB SAM . . . D 3 -14.492 71.402 1.797 1 18.98 ? CB SAM 500 A 1 HETATM 7 C CG SAM . . . D 3 -13.776 72.657 2.354 1 20.9 ? CG SAM 500 A 1 HETATM 8 S SD SAM . . . D 3 -14.608 73.798 3.261 1 19.68 ? SD SAM 500 A 1 HETATM 9 C CE SAM . . . D 3 -16.216 73.452 3.636 1 18.74 ? CE SAM 500 A 1 HETATM 10 C C5' SAM . . . D 3 -14.606 75.228 2.311 1 15.6 ? C5' SAM 500 A 1 HETATM 11 C C4' SAM . . . D 3 -13.954 76.477 2.982 1 12.9 ? C4' SAM 500 A 1 HETATM 12 O O4' SAM . . . D 3 -14.764 76.758 4.115 1 13.1 ? O4' SAM 500 A 1 HETATM 13 C C3' SAM . . . D 3 -12.542 76.325 3.55 1 9.75 ? C3' SAM 500 A 1 HETATM 14 O O3' SAM . . . D 3 -11.59 77.074 2.766 1 8.75 ? O3' SAM 500 A 1 HETATM 15 C C2' SAM . . . D 3 -12.562 76.856 4.989 1 10.76 ? C2' SAM 500 A 1 HETATM 16 O O2' SAM . . . D 3 -11.576 77.932 5.151 1 8.97 ? O2' SAM 500 A 1 HETATM 17 C C1' SAM . . . D 3 -14.008 77.318 5.171 1 9.76 ? C1' SAM 500 A 1 HETATM 18 N N9 SAM . . . D 3 -14.62 76.714 6.366 1 9.52 ? N9 SAM 500 A 1 HETATM 19 C C8 SAM . . . D 3 -14.781 75.402 6.614 1 10.28 ? C8 SAM 500 A 1 HETATM 20 N N7 SAM . . . D 3 -15.342 75.196 7.825 1 11.78 ? N7 SAM 500 A 1 HETATM 21 C C5 SAM . . . D 3 -15.591 76.418 8.354 1 10.69 ? C5 SAM 500 A 1 HETATM 22 C C6 SAM . . . D 3 -16.164 76.99 9.609 1 10.98 ? C6 SAM 500 A 1 HETATM 23 N N6 SAM . . . D 3 -16.668 76.225 10.632 1 10.13 ? N6 SAM 500 A 1 HETATM 24 N N1 SAM . . . D 3 -16.166 78.361 9.692 1 9.02 ? N1 SAM 500 A 1 HETATM 25 C C2 SAM . . . D 3 -15.689 79.15 8.738 1 8.87 ? C2 SAM 500 A 1 HETATM 26 N N3 SAM . . . D 3 -15.167 78.725 7.588 1 6.44 ? N3 SAM 500 A 1 HETATM 27 C C4 SAM . . . D 3 -15.109 77.403 7.35 1 8.57 ? C4 SAM 500 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #