data_2Q7U # _model_server_result.job_id mZUX-QYujMNUserh8MU9EA _model_server_result.datetime_utc '2024-12-26 21:15:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q7u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2001}' # _entry.id 2Q7U # _exptl.entry_id 2Q7U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 322.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "THYMIDINE-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q7U _cell.length_a 44.5 _cell.length_b 86.31 _cell.length_c 127.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q7U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N2 O8 P' _chem_comp.formula_weight 322.208 _chem_comp.id TMP _chem_comp.mon_nstd_flag . _chem_comp.name "THYMIDINE-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P TMP doub 304 n n P O2P TMP sing 305 n n P O3P TMP sing 306 n n P O5' TMP sing 307 n n O2P HOP2 TMP sing 308 n n O3P HOP3 TMP sing 309 n n O5' C5' TMP sing 310 n n C5' C4' TMP sing 311 n n C5' "H5'1" TMP sing 312 n n C5' "H5'2" TMP sing 313 n n C4' O4' TMP sing 314 n n C4' C3' TMP sing 315 n n C4' H4' TMP sing 316 n n O4' C1' TMP sing 317 n n C3' O3' TMP sing 318 n n C3' C2' TMP sing 319 n n C3' H3' TMP sing 320 n n O3' HO3' TMP sing 321 n n C2' C1' TMP sing 322 n n C2' "H2'1" TMP sing 323 n n C2' "H2'2" TMP sing 324 n n C1' N1 TMP sing 325 n n C1' H1' TMP sing 326 n n N1 C2 TMP sing 327 n n N1 C6 TMP sing 328 n n C2 O2 TMP doub 329 n n C2 N3 TMP sing 330 n n N3 C4 TMP sing 331 n n N3 HN3 TMP sing 332 n n C4 O4 TMP doub 333 n n C4 C5 TMP sing 334 n n C5 C5M TMP sing 335 n n C5 C6 TMP doub 336 n n C5M H51 TMP sing 337 n n C5M H52 TMP sing 338 n n C5M H53 TMP sing 339 n n C6 H6 TMP sing 340 n n # _atom_sites.entry_id 2Q7U _atom_sites.fract_transf_matrix[1][1] 0.022472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007818 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 3001 3001 MG MG2 . D 3 PON A 1 3002 3002 PON PNP . E 4 TMP A 1 2001 2001 TMP THY . F 5 HOH A 1 6007 6007 HOH HOH . F 5 HOH A 2 6008 6008 HOH HOH . F 5 HOH A 3 6014 6014 HOH HOH . F 5 HOH A 4 6020 6020 HOH HOH . F 5 HOH A 5 6024 6024 HOH HOH . F 5 HOH A 6 6029 6029 HOH HOH . F 5 HOH A 7 6037 6037 HOH HOH . F 5 HOH A 8 6038 6038 HOH HOH . F 5 HOH A 9 6040 6040 HOH HOH . F 5 HOH A 10 6041 6041 HOH HOH . F 5 HOH A 11 6042 6042 HOH HOH . F 5 HOH A 12 6044 6044 HOH HOH . F 5 HOH A 13 6045 6045 HOH HOH . F 5 HOH A 14 6051 6051 HOH HOH . F 5 HOH A 15 6052 6052 HOH HOH . F 5 HOH A 16 6056 6056 HOH HOH . F 5 HOH A 17 6063 6063 HOH HOH . F 5 HOH A 18 6067 6067 HOH HOH . F 5 HOH A 19 6068 6068 HOH HOH . F 5 HOH A 20 6069 6069 HOH HOH . F 5 HOH A 21 6071 6071 HOH HOH . F 5 HOH A 22 6074 6074 HOH HOH . F 5 HOH A 23 6078 6078 HOH HOH . F 5 HOH A 24 6084 6084 HOH HOH . F 5 HOH A 25 6085 6085 HOH HOH . G 5 HOH B 1 6012 6012 HOH HOH . G 5 HOH B 2 6016 6016 HOH HOH . G 5 HOH B 3 6017 6017 HOH HOH . G 5 HOH B 4 6022 6022 HOH HOH . G 5 HOH B 5 6025 6025 HOH HOH . G 5 HOH B 6 6028 6028 HOH HOH . G 5 HOH B 7 6032 6032 HOH HOH . G 5 HOH B 8 6034 6034 HOH HOH . G 5 HOH B 9 6035 6035 HOH HOH . G 5 HOH B 10 6036 6036 HOH HOH . G 5 HOH B 11 6048 6048 HOH HOH . G 5 HOH B 12 6058 6058 HOH HOH . G 5 HOH B 13 6061 6061 HOH HOH . G 5 HOH B 14 6062 6062 HOH HOH . G 5 HOH B 15 6066 6066 HOH HOH . G 5 HOH B 16 6072 6072 HOH HOH . G 5 HOH B 17 6073 6073 HOH HOH . G 5 HOH B 18 6075 6075 HOH HOH . G 5 HOH B 19 6076 6076 HOH HOH . G 5 HOH B 20 6081 6081 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P TMP . . . E 4 1.162 15.762 8.918 1 102.19 ? P TMP 2001 A 1 HETATM 2 O O1P TMP . . . E 4 0.489 15.661 10.228 1 101.99 ? O1P TMP 2001 A 1 HETATM 3 O O2P TMP . . . E 4 0.582 15.067 7.728 1 102.91 ? O2P TMP 2001 A 1 HETATM 4 O O5' TMP . . . E 4 2.685 15.319 9.117 1 102.07 ? O5' TMP 2001 A 1 HETATM 5 C C5' TMP . . . E 4 3.81 16.226 9.124 1 99.58 ? C5' TMP 2001 A 1 HETATM 6 C C4' TMP . . . E 4 4.733 15.913 10.281 1 97.09 ? C4' TMP 2001 A 1 HETATM 7 O O4' TMP . . . E 4 6.078 16.431 10.074 1 95.82 ? O4' TMP 2001 A 1 HETATM 8 C C3' TMP . . . E 4 4.416 16.115 11.767 1 96.02 ? C3' TMP 2001 A 1 HETATM 9 O O3' TMP . . . E 4 3.891 14.934 12.366 1 94.23 ? O3' TMP 2001 A 1 HETATM 10 C C2' TMP . . . E 4 5.762 16.482 12.387 1 95.42 ? C2' TMP 2001 A 1 HETATM 11 C C1' TMP . . . E 4 6.47 17.162 11.217 1 95.04 ? C1' TMP 2001 A 1 HETATM 12 N N1 TMP . . . E 4 6.697 18.634 11.209 1 94.21 ? N1 TMP 2001 A 1 HETATM 13 C C2 TMP . . . E 4 5.809 19.481 11.854 1 93.16 ? C2 TMP 2001 A 1 HETATM 14 O O2 TMP . . . E 4 4.806 19.093 12.438 1 92.48 ? O2 TMP 2001 A 1 HETATM 15 N N3 TMP . . . E 4 6.136 20.813 11.781 1 92.55 ? N3 TMP 2001 A 1 HETATM 16 C C4 TMP . . . E 4 7.219 21.378 11.13 1 93.09 ? C4 TMP 2001 A 1 HETATM 17 O O4 TMP . . . E 4 7.318 22.6 11.061 1 93.72 ? O4 TMP 2001 A 1 HETATM 18 C C5 TMP . . . E 4 8.104 20.436 10.478 1 93.3 ? C5 TMP 2001 A 1 HETATM 19 C C5M TMP . . . E 4 9.341 20.942 9.803 1 92.48 ? C5M TMP 2001 A 1 HETATM 20 C C6 TMP . . . E 4 7.799 19.132 10.547 1 93.76 ? C6 TMP 2001 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #