data_2Q88 # _model_server_result.job_id bCROmru-YLbeNkV28fD9pQ _model_server_result.datetime_utc '2024-11-20 00:41:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 2Q88 # _exptl.entry_id 2Q88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q88 _cell.length_a 57.365 _cell.length_b 57.365 _cell.length_c 161.883 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 87 A CYS 86 1_555 A SG CYS 254 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 98 A CYS 97 1_555 A SG CYS 202 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc1 A OG SER 57 A SER 56 1_555 E CD CD . A CD 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc2 A NE2 HIS 73 A HIS 72 1_555 E CD CD . A CD 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc3 A OE1 GLU 212 A GLU 211 1_555 D CD CD . A CD 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc4 A OD2 ASP 216 A ASP 215 1_555 D CD CD . A CD 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc5 A OE2 GLU 251 A GLU 250 1_555 B CD CD . A CD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc6 B CD CD . A CD 601 1_555 G O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc7 B CD CD . A CD 601 1_555 G O HOH . A HOH 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc8 C CD CD . A CD 602 1_555 G O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc9 C CD CD . A CD 602 1_555 G O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc10 C CD CD . A CD 602 1_555 G O HOH . A HOH 673 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc11 D CD CD . A CD 603 1_555 G O HOH . A HOH 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc12 D CD CD . A CD 603 1_555 G O HOH . A HOH 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc13 E CD CD . A CD 604 1_555 G O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? # _chem_comp.formula 'C6 H10 N2 O2' _chem_comp.formula_weight 142.156 _chem_comp.id 4CS _chem_comp.mon_nstd_flag . _chem_comp.name '(4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ECTOINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C 4CS doub 1 n n C OXT 4CS sing 2 n n C CA 4CS sing 3 n n OXT HOXT 4CS sing 4 n n CA CB 4CS sing 5 n n CA N 4CS sing 6 n n CA HA 4CS sing 7 n n CB CAD 4CS sing 8 n n CB HB1 4CS sing 9 n n CB HB2 4CS sing 10 n n CAD NAG 4CS sing 11 n n CAD HAD1 4CS sing 12 n n CAD HAD2 4CS sing 13 n n NAG CAI 4CS sing 14 n n NAG HNAG 4CS sing 15 n n CAI CAA 4CS sing 16 n n CAI N 4CS doub 17 n n CAA HAA1 4CS sing 18 n n CAA HAA2 4CS sing 19 n n CAA HAA3 4CS sing 20 n n # _atom_sites.entry_id 2Q88 _atom_sites.fract_transf_matrix[1][1] 0.017432 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017432 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 601 601 CD CD . C 2 CD A 1 602 602 CD CD . D 2 CD A 1 603 603 CD CD . E 2 CD A 1 604 604 CD CD . F 3 4CS A 1 501 501 4CS 4CS . G 4 HOH A 1 605 1 HOH HOH . G 4 HOH A 2 606 2 HOH HOH . G 4 HOH A 3 607 3 HOH HOH . G 4 HOH A 4 608 4 HOH HOH . G 4 HOH A 5 609 5 HOH HOH . G 4 HOH A 6 610 6 HOH HOH . G 4 HOH A 7 611 7 HOH HOH . G 4 HOH A 8 612 8 HOH HOH . G 4 HOH A 9 613 9 HOH HOH . G 4 HOH A 10 614 10 HOH HOH . G 4 HOH A 11 615 11 HOH HOH . G 4 HOH A 12 616 12 HOH HOH . G 4 HOH A 13 617 13 HOH HOH . G 4 HOH A 14 618 14 HOH HOH . G 4 HOH A 15 619 15 HOH HOH . G 4 HOH A 16 620 16 HOH HOH . G 4 HOH A 17 621 17 HOH HOH . G 4 HOH A 18 622 18 HOH HOH . G 4 HOH A 19 623 19 HOH HOH . G 4 HOH A 20 624 20 HOH HOH . G 4 HOH A 21 625 21 HOH HOH . G 4 HOH A 22 626 22 HOH HOH . G 4 HOH A 23 627 23 HOH HOH . G 4 HOH A 24 628 24 HOH HOH . G 4 HOH A 25 629 25 HOH HOH . G 4 HOH A 26 630 26 HOH HOH . G 4 HOH A 27 631 27 HOH HOH . G 4 HOH A 28 632 28 HOH HOH . G 4 HOH A 29 633 29 HOH HOH . G 4 HOH A 30 634 30 HOH HOH . G 4 HOH A 31 635 31 HOH HOH . G 4 HOH A 32 636 32 HOH HOH . G 4 HOH A 33 637 33 HOH HOH . G 4 HOH A 34 638 34 HOH HOH . G 4 HOH A 35 639 35 HOH HOH . G 4 HOH A 36 640 36 HOH HOH . G 4 HOH A 37 641 37 HOH HOH . G 4 HOH A 38 642 38 HOH HOH . G 4 HOH A 39 643 39 HOH HOH . G 4 HOH A 40 644 40 HOH HOH . G 4 HOH A 41 645 41 HOH HOH . G 4 HOH A 42 646 42 HOH HOH . G 4 HOH A 43 647 43 HOH HOH . G 4 HOH A 44 648 44 HOH HOH . G 4 HOH A 45 649 45 HOH HOH . G 4 HOH A 46 650 46 HOH HOH . G 4 HOH A 47 651 47 HOH HOH . G 4 HOH A 48 652 48 HOH HOH . G 4 HOH A 49 653 49 HOH HOH . G 4 HOH A 50 654 50 HOH HOH . G 4 HOH A 51 655 51 HOH HOH . G 4 HOH A 52 656 52 HOH HOH . G 4 HOH A 53 657 53 HOH HOH . G 4 HOH A 54 658 54 HOH HOH . G 4 HOH A 55 659 55 HOH HOH . G 4 HOH A 56 660 56 HOH HOH . G 4 HOH A 57 661 57 HOH HOH . G 4 HOH A 58 662 58 HOH HOH . G 4 HOH A 59 663 59 HOH HOH . G 4 HOH A 60 664 60 HOH HOH . G 4 HOH A 61 665 61 HOH HOH . G 4 HOH A 62 666 62 HOH HOH . G 4 HOH A 63 667 63 HOH HOH . G 4 HOH A 64 668 64 HOH HOH . G 4 HOH A 65 669 65 HOH HOH . G 4 HOH A 66 670 66 HOH HOH . G 4 HOH A 67 671 67 HOH HOH . G 4 HOH A 68 672 68 HOH HOH . G 4 HOH A 69 673 69 HOH HOH . G 4 HOH A 70 674 70 HOH HOH . G 4 HOH A 71 675 71 HOH HOH . G 4 HOH A 72 676 72 HOH HOH . G 4 HOH A 73 677 73 HOH HOH . G 4 HOH A 74 678 74 HOH HOH . G 4 HOH A 75 679 75 HOH HOH . G 4 HOH A 76 680 76 HOH HOH . G 4 HOH A 77 681 77 HOH HOH . G 4 HOH A 78 682 78 HOH HOH . G 4 HOH A 79 683 79 HOH HOH . G 4 HOH A 80 684 80 HOH HOH . G 4 HOH A 81 685 81 HOH HOH . G 4 HOH A 82 686 82 HOH HOH . G 4 HOH A 83 687 83 HOH HOH . G 4 HOH A 84 688 84 HOH HOH . G 4 HOH A 85 689 85 HOH HOH . G 4 HOH A 86 690 86 HOH HOH . G 4 HOH A 87 691 87 HOH HOH . G 4 HOH A 88 692 88 HOH HOH . G 4 HOH A 89 693 89 HOH HOH . G 4 HOH A 90 694 90 HOH HOH . G 4 HOH A 91 695 91 HOH HOH . G 4 HOH A 92 696 92 HOH HOH . G 4 HOH A 93 697 93 HOH HOH . G 4 HOH A 94 698 94 HOH HOH . G 4 HOH A 95 699 95 HOH HOH . G 4 HOH A 96 700 96 HOH HOH . G 4 HOH A 97 701 97 HOH HOH . G 4 HOH A 98 702 98 HOH HOH . G 4 HOH A 99 703 99 HOH HOH . G 4 HOH A 100 704 100 HOH HOH . G 4 HOH A 101 705 101 HOH HOH . G 4 HOH A 102 706 102 HOH HOH . G 4 HOH A 103 707 103 HOH HOH . G 4 HOH A 104 708 104 HOH HOH . G 4 HOH A 105 709 105 HOH HOH . G 4 HOH A 106 710 106 HOH HOH . G 4 HOH A 107 711 107 HOH HOH . G 4 HOH A 108 712 108 HOH HOH . G 4 HOH A 109 713 109 HOH HOH . G 4 HOH A 110 714 110 HOH HOH . G 4 HOH A 111 715 111 HOH HOH . G 4 HOH A 112 716 112 HOH HOH . G 4 HOH A 113 717 113 HOH HOH . G 4 HOH A 114 718 114 HOH HOH . G 4 HOH A 115 719 115 HOH HOH . G 4 HOH A 116 720 116 HOH HOH . G 4 HOH A 117 721 117 HOH HOH . G 4 HOH A 118 722 118 HOH HOH . G 4 HOH A 119 723 119 HOH HOH . G 4 HOH A 120 724 120 HOH HOH . G 4 HOH A 121 725 121 HOH HOH . G 4 HOH A 122 726 122 HOH HOH . G 4 HOH A 123 727 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 4CS . . . F 3 24.078 41.635 73.382 1 22.38 ? O 4CS 501 A 1 HETATM 2 C C 4CS . . . F 3 23.529 40.846 72.613 1 21.89 ? C 4CS 501 A 1 HETATM 3 O OXT 4CS . . . F 3 24.022 40.622 71.501 1 22.4 ? OXT 4CS 501 A 1 HETATM 4 C CA 4CS . . . F 3 22.227 40.168 73.019 1 21.02 ? CA 4CS 501 A 1 HETATM 5 C CB 4CS . . . F 3 22.201 39.748 74.476 1 20.98 ? CB 4CS 501 A 1 HETATM 6 C CAD 4CS . . . F 3 20.843 39.121 74.807 1 20.33 ? CAD 4CS 501 A 1 HETATM 7 N NAG 4CS . . . F 3 20.578 37.994 73.875 1 20.2 ? NAG 4CS 501 A 1 HETATM 8 C CAI 4CS . . . F 3 21.128 37.971 72.584 1 20.63 ? CAI 4CS 501 A 1 HETATM 9 C CAA 4CS . . . F 3 20.853 36.787 71.641 1 20.18 ? CAA 4CS 501 A 1 HETATM 10 N N 4CS . . . F 3 21.962 39.009 72.147 1 20.65 ? N 4CS 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 649 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 10 #