data_2Q8C
#
_model_server_result.job_id            FFzYBpwxM6r3Gxdwynw59w 
_model_server_result.datetime_utc      '2024-11-21 16:17:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2q8c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    2Q8C 
#
_exptl.entry_id    2Q8C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Q8C 
_cell.length_a            100.887 
_cell.length_b            149.121 
_cell.length_c            57.056 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Q8C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,K,M 1 1 
B,D,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C ARG 8 F ARG 8 1_555 C N M3L 9 F M3L 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 C C M3L 9 F M3L 9 1_555 C N SER 10 F SER 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 D C ARG 8 G ARG 8 1_555 D N M3L 9 G M3L 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 D C M3L 9 G M3L 9 1_555 D N SER 10 G SER 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A NE2 HIS 190 A HIS 188 1_555 E NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc2 A OE1 GLU 192 A GLU 190 1_555 E NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc3 A SG CYS 236 A CYS 234 1_555 F ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc4 A NE2 HIS 242 A HIS 240 1_555 F ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc5 A NE2 HIS 278 A HIS 276 1_555 E NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc6 A SG CYS 308 A CYS 306 1_555 F ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? 
metalc ? metalc7 A SG CYS 310 A CYS 308 1_555 F ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc8 E NI NI . A NI 501 1_555 G O5 AKG . A AKG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc9 E NI NI . A NI 501 1_555 G O2 AKG . A AKG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.518 ? 
metalc ? metalc10 E NI NI . A NI 501 1_555 K O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? 
metalc ? metalc11 B NE2 HIS 190 B HIS 188 1_555 H NI NI . B NI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc12 B OE1 GLU 192 B GLU 190 1_555 H NI NI . B NI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc13 B SG CYS 236 B CYS 234 1_555 I ZN ZN . B ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc14 B NE2 HIS 242 B HIS 240 1_555 I ZN ZN . B ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc15 B NE2 HIS 278 B HIS 276 1_555 H NI NI . B NI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc16 B SG CYS 308 B CYS 306 1_555 I ZN ZN . B ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? 
metalc ? metalc17 B SG CYS 310 B CYS 308 1_555 I ZN ZN . B ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc18 H NI NI . B NI 502 1_555 J O2 AKG . B AKG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? 
metalc ? metalc19 H NI NI . B NI 502 1_555 J O5 AKG . B AKG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc20 H NI NI . B NI 502 1_555 L O HOH . B HOH 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2Q8C 
_atom_sites.fract_transf_matrix[1][1]    0.009912 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017527 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NI A 1 501 501 NI NI . 
F 4 ZN A 1 505 505 ZN ZN . 
G 5 AKG A 1 503 503 AKG AKG . 
H 3 NI B 1 502 502 NI NI . 
I 4 ZN B 1 506 506 ZN ZN . 
J 5 AKG B 1 504 504 AKG AKG . 
K 6 HOH A 1 506 3 HOH HOH . 
K 6 HOH A 2 507 4 HOH HOH . 
K 6 HOH A 3 508 5 HOH HOH . 
K 6 HOH A 4 509 6 HOH HOH . 
K 6 HOH A 5 510 10 HOH HOH . 
K 6 HOH A 6 511 12 HOH HOH . 
K 6 HOH A 7 512 13 HOH HOH . 
K 6 HOH A 8 513 15 HOH HOH . 
K 6 HOH A 9 514 16 HOH HOH . 
K 6 HOH A 10 515 19 HOH HOH . 
K 6 HOH A 11 516 20 HOH HOH . 
K 6 HOH A 12 517 27 HOH HOH . 
K 6 HOH A 13 518 29 HOH HOH . 
K 6 HOH A 14 519 30 HOH HOH . 
K 6 HOH A 15 520 34 HOH HOH . 
K 6 HOH A 16 521 36 HOH HOH . 
K 6 HOH A 17 522 39 HOH HOH . 
K 6 HOH A 18 523 40 HOH HOH . 
K 6 HOH A 19 524 41 HOH HOH . 
K 6 HOH A 20 525 45 HOH HOH . 
K 6 HOH A 21 526 48 HOH HOH . 
K 6 HOH A 22 527 49 HOH HOH . 
K 6 HOH A 23 528 50 HOH HOH . 
K 6 HOH A 24 529 51 HOH HOH . 
K 6 HOH A 25 530 55 HOH HOH . 
K 6 HOH A 26 531 58 HOH HOH . 
K 6 HOH A 27 532 60 HOH HOH . 
K 6 HOH A 28 533 62 HOH HOH . 
K 6 HOH A 29 534 64 HOH HOH . 
K 6 HOH A 30 535 65 HOH HOH . 
K 6 HOH A 31 536 68 HOH HOH . 
K 6 HOH A 32 537 69 HOH HOH . 
K 6 HOH A 33 538 70 HOH HOH . 
K 6 HOH A 34 539 71 HOH HOH . 
K 6 HOH A 35 540 72 HOH HOH . 
K 6 HOH A 36 541 73 HOH HOH . 
K 6 HOH A 37 542 74 HOH HOH . 
K 6 HOH A 38 543 75 HOH HOH . 
K 6 HOH A 39 544 76 HOH HOH . 
K 6 HOH A 40 545 77 HOH HOH . 
K 6 HOH A 41 546 80 HOH HOH . 
K 6 HOH A 42 547 81 HOH HOH . 
K 6 HOH A 43 548 82 HOH HOH . 
K 6 HOH A 44 549 84 HOH HOH . 
K 6 HOH A 45 550 86 HOH HOH . 
K 6 HOH A 46 551 87 HOH HOH . 
K 6 HOH A 47 552 88 HOH HOH . 
K 6 HOH A 48 553 91 HOH HOH . 
K 6 HOH A 49 554 92 HOH HOH . 
K 6 HOH A 50 555 93 HOH HOH . 
K 6 HOH A 51 556 96 HOH HOH . 
K 6 HOH A 52 557 97 HOH HOH . 
K 6 HOH A 53 558 98 HOH HOH . 
K 6 HOH A 54 559 102 HOH HOH . 
K 6 HOH A 55 560 105 HOH HOH . 
K 6 HOH A 56 561 107 HOH HOH . 
K 6 HOH A 57 562 109 HOH HOH . 
K 6 HOH A 58 563 113 HOH HOH . 
K 6 HOH A 59 564 115 HOH HOH . 
K 6 HOH A 60 565 117 HOH HOH . 
K 6 HOH A 61 566 118 HOH HOH . 
K 6 HOH A 62 567 119 HOH HOH . 
K 6 HOH A 63 568 120 HOH HOH . 
K 6 HOH A 64 569 121 HOH HOH . 
K 6 HOH A 65 570 125 HOH HOH . 
K 6 HOH A 66 571 126 HOH HOH . 
K 6 HOH A 67 572 129 HOH HOH . 
K 6 HOH A 68 573 130 HOH HOH . 
K 6 HOH A 69 574 132 HOH HOH . 
K 6 HOH A 70 575 133 HOH HOH . 
K 6 HOH A 71 576 135 HOH HOH . 
K 6 HOH A 72 577 137 HOH HOH . 
K 6 HOH A 73 578 138 HOH HOH . 
K 6 HOH A 74 579 140 HOH HOH . 
K 6 HOH A 75 580 144 HOH HOH . 
K 6 HOH A 76 581 148 HOH HOH . 
K 6 HOH A 77 582 150 HOH HOH . 
K 6 HOH A 78 583 152 HOH HOH . 
K 6 HOH A 79 584 153 HOH HOH . 
K 6 HOH A 80 585 154 HOH HOH . 
K 6 HOH A 81 586 156 HOH HOH . 
K 6 HOH A 82 587 158 HOH HOH . 
K 6 HOH A 83 588 159 HOH HOH . 
K 6 HOH A 84 589 160 HOH HOH . 
K 6 HOH A 85 590 161 HOH HOH . 
K 6 HOH A 86 591 163 HOH HOH . 
K 6 HOH A 87 592 164 HOH HOH . 
K 6 HOH A 88 593 166 HOH HOH . 
K 6 HOH A 89 594 168 HOH HOH . 
K 6 HOH A 90 595 169 HOH HOH . 
K 6 HOH A 91 596 171 HOH HOH . 
K 6 HOH A 92 597 174 HOH HOH . 
K 6 HOH A 93 598 179 HOH HOH . 
K 6 HOH A 94 599 181 HOH HOH . 
K 6 HOH A 95 600 182 HOH HOH . 
K 6 HOH A 96 601 184 HOH HOH . 
K 6 HOH A 97 602 186 HOH HOH . 
K 6 HOH A 98 603 191 HOH HOH . 
K 6 HOH A 99 604 193 HOH HOH . 
K 6 HOH A 100 605 196 HOH HOH . 
K 6 HOH A 101 606 197 HOH HOH . 
K 6 HOH A 102 607 198 HOH HOH . 
K 6 HOH A 103 608 201 HOH HOH . 
K 6 HOH A 104 609 204 HOH HOH . 
L 6 HOH B 1 507 2 HOH HOH . 
L 6 HOH B 2 508 7 HOH HOH . 
L 6 HOH B 3 509 8 HOH HOH . 
L 6 HOH B 4 510 9 HOH HOH . 
L 6 HOH B 5 511 11 HOH HOH . 
L 6 HOH B 6 512 14 HOH HOH . 
L 6 HOH B 7 513 17 HOH HOH . 
L 6 HOH B 8 514 18 HOH HOH . 
L 6 HOH B 9 515 21 HOH HOH . 
L 6 HOH B 10 516 22 HOH HOH . 
L 6 HOH B 11 517 23 HOH HOH . 
L 6 HOH B 12 518 24 HOH HOH . 
L 6 HOH B 13 519 25 HOH HOH . 
L 6 HOH B 14 520 26 HOH HOH . 
L 6 HOH B 15 521 28 HOH HOH . 
L 6 HOH B 16 522 31 HOH HOH . 
L 6 HOH B 17 523 32 HOH HOH . 
L 6 HOH B 18 524 33 HOH HOH . 
L 6 HOH B 19 525 35 HOH HOH . 
L 6 HOH B 20 526 37 HOH HOH . 
L 6 HOH B 21 527 38 HOH HOH . 
L 6 HOH B 22 528 42 HOH HOH . 
L 6 HOH B 23 529 43 HOH HOH . 
L 6 HOH B 24 530 44 HOH HOH . 
L 6 HOH B 25 531 46 HOH HOH . 
L 6 HOH B 26 532 47 HOH HOH . 
L 6 HOH B 27 533 52 HOH HOH . 
L 6 HOH B 28 534 53 HOH HOH . 
L 6 HOH B 29 535 54 HOH HOH . 
L 6 HOH B 30 536 56 HOH HOH . 
L 6 HOH B 31 537 57 HOH HOH . 
L 6 HOH B 32 538 59 HOH HOH . 
L 6 HOH B 33 539 61 HOH HOH . 
L 6 HOH B 34 540 63 HOH HOH . 
L 6 HOH B 35 541 66 HOH HOH . 
L 6 HOH B 36 542 67 HOH HOH . 
L 6 HOH B 37 543 78 HOH HOH . 
L 6 HOH B 38 544 79 HOH HOH . 
L 6 HOH B 39 545 83 HOH HOH . 
L 6 HOH B 40 546 85 HOH HOH . 
L 6 HOH B 41 547 89 HOH HOH . 
L 6 HOH B 42 548 90 HOH HOH . 
L 6 HOH B 43 549 94 HOH HOH . 
L 6 HOH B 44 550 99 HOH HOH . 
L 6 HOH B 45 551 100 HOH HOH . 
L 6 HOH B 46 552 101 HOH HOH . 
L 6 HOH B 47 553 106 HOH HOH . 
L 6 HOH B 48 554 108 HOH HOH . 
L 6 HOH B 49 555 110 HOH HOH . 
L 6 HOH B 50 556 111 HOH HOH . 
L 6 HOH B 51 557 112 HOH HOH . 
L 6 HOH B 52 558 114 HOH HOH . 
L 6 HOH B 53 559 116 HOH HOH . 
L 6 HOH B 54 560 122 HOH HOH . 
L 6 HOH B 55 561 123 HOH HOH . 
L 6 HOH B 56 562 124 HOH HOH . 
L 6 HOH B 57 563 127 HOH HOH . 
L 6 HOH B 58 564 128 HOH HOH . 
L 6 HOH B 59 565 131 HOH HOH . 
L 6 HOH B 60 566 134 HOH HOH . 
L 6 HOH B 61 567 136 HOH HOH . 
L 6 HOH B 62 568 139 HOH HOH . 
L 6 HOH B 63 569 141 HOH HOH . 
L 6 HOH B 64 570 142 HOH HOH . 
L 6 HOH B 65 571 143 HOH HOH . 
L 6 HOH B 66 572 145 HOH HOH . 
L 6 HOH B 67 573 146 HOH HOH . 
L 6 HOH B 68 574 147 HOH HOH . 
L 6 HOH B 69 575 149 HOH HOH . 
L 6 HOH B 70 576 151 HOH HOH . 
L 6 HOH B 71 577 155 HOH HOH . 
L 6 HOH B 72 578 157 HOH HOH . 
L 6 HOH B 73 579 162 HOH HOH . 
L 6 HOH B 74 580 167 HOH HOH . 
L 6 HOH B 75 581 170 HOH HOH . 
L 6 HOH B 76 582 172 HOH HOH . 
L 6 HOH B 77 583 173 HOH HOH . 
L 6 HOH B 78 584 175 HOH HOH . 
L 6 HOH B 79 585 176 HOH HOH . 
L 6 HOH B 80 586 177 HOH HOH . 
L 6 HOH B 81 587 178 HOH HOH . 
L 6 HOH B 82 588 180 HOH HOH . 
L 6 HOH B 83 589 183 HOH HOH . 
L 6 HOH B 84 590 185 HOH HOH . 
L 6 HOH B 85 591 187 HOH HOH . 
L 6 HOH B 86 592 188 HOH HOH . 
L 6 HOH B 87 593 189 HOH HOH . 
L 6 HOH B 88 594 190 HOH HOH . 
L 6 HOH B 89 595 192 HOH HOH . 
L 6 HOH B 90 596 194 HOH HOH . 
L 6 HOH B 91 597 195 HOH HOH . 
L 6 HOH B 92 598 199 HOH HOH . 
L 6 HOH B 93 599 200 HOH HOH . 
L 6 HOH B 94 600 203 HOH HOH . 
M 6 HOH F 1 95 95 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -20.433 
_atom_site.Cartn_y               53.08 
_atom_site.Cartn_z               -7.771 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        29.68 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#