data_2Q8I # _model_server_result.job_id 3hyRqFUzOQMs-eUx_oBUag _model_server_result.datetime_utc '2025-02-17 03:18:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":408}' # _entry.id 2Q8I # _exptl.entry_id 2Q8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 364.777 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RADICICOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Q8I _cell.length_a 120.872 _cell.length_b 120.872 _cell.length_c 239.637 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -120.872 0 119.8185 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 68 B LYS 173 1_555 F C1 RED . B RED 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc1 A O SER 33 A SER 20 1_555 C K K . A K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc2 A O PHE 35 A PHE 22 1_555 C K K . A K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc3 A OD1 ASN 72 A ASN 59 1_555 C K K . A K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? metalc ? metalc4 A O PHE 385 A PHE 372 1_555 C K K . A K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? # _chem_comp.formula 'C18 H17 Cl O6' _chem_comp.formula_weight 364.777 _chem_comp.id RDC _chem_comp.mon_nstd_flag . _chem_comp.name RADICICOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MONORDEN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RDC sing 290 n n C1 O1 RDC sing 291 n n C1 O2 RDC doub 292 n n C2 C3 RDC doub 293 n y C2 C7 RDC sing 294 n y C3 C4 RDC sing 295 n y C3 O3 RDC sing 296 n n C4 C5 RDC doub 297 n y C4 H4 RDC sing 298 n n C5 C6 RDC sing 299 n y C5 O4 RDC sing 300 n n C6 C7 RDC doub 301 n y C6 CL1 RDC sing 302 n n C7 C8 RDC sing 303 n n C8 C9 RDC sing 304 n n C8 H81 RDC sing 305 n n C8 H82 RDC sing 306 n n C9 C10 RDC sing 307 n n C9 O5 RDC doub 308 n n C10 C11 RDC doub 309 e n C10 H10 RDC sing 310 n n C11 C12 RDC sing 311 n n C11 H11 RDC sing 312 n n C12 C13 RDC doub 313 z n C12 H12 RDC sing 314 n n C13 C14 RDC sing 315 n n C13 H13 RDC sing 316 n n C14 C15 RDC sing 317 n n C14 O6 RDC sing 318 n n C14 H14 RDC sing 319 n n C15 C16 RDC sing 320 n n C15 O6 RDC sing 321 n n C15 H15 RDC sing 322 n n C16 C17 RDC sing 323 n n C16 H161 RDC sing 324 n n C16 H162 RDC sing 325 n n C17 C18 RDC sing 326 n n C17 O1 RDC sing 327 n n C17 H17 RDC sing 328 n n C18 H181 RDC sing 329 n n C18 H182 RDC sing 330 n n C18 H183 RDC sing 331 n n O3 HO3 RDC sing 332 n n O4 HO4 RDC sing 333 n n # _atom_sites.entry_id 2Q8I _atom_sites.fract_transf_matrix[1][1] 0.008273 _atom_sites.fract_transf_matrix[1][2] 0.004777 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K A 1 407 100 K K . D 4 RDC A 1 408 101 RDC RDC . E 5 GOL A 1 409 102 GOL GOL . F 6 RED B 1 300 300 RED RED . G 7 HOH A 1 410 1 HOH HOH . G 7 HOH A 2 411 2 HOH HOH . G 7 HOH A 3 412 3 HOH HOH . G 7 HOH A 4 413 4 HOH HOH . G 7 HOH A 5 414 5 HOH HOH . G 7 HOH A 6 415 6 HOH HOH . G 7 HOH A 7 416 7 HOH HOH . G 7 HOH A 8 417 8 HOH HOH . G 7 HOH A 9 418 9 HOH HOH . G 7 HOH A 10 419 10 HOH HOH . G 7 HOH A 11 420 11 HOH HOH . G 7 HOH A 12 421 12 HOH HOH . G 7 HOH A 13 422 13 HOH HOH . G 7 HOH A 14 423 14 HOH HOH . G 7 HOH A 15 424 15 HOH HOH . G 7 HOH A 16 425 16 HOH HOH . G 7 HOH A 17 426 17 HOH HOH . G 7 HOH A 18 427 18 HOH HOH . G 7 HOH A 19 428 19 HOH HOH . G 7 HOH A 20 429 20 HOH HOH . G 7 HOH A 21 430 21 HOH HOH . G 7 HOH A 22 431 22 HOH HOH . G 7 HOH A 23 432 23 HOH HOH . G 7 HOH A 24 433 24 HOH HOH . G 7 HOH A 25 434 25 HOH HOH . G 7 HOH A 26 435 26 HOH HOH . G 7 HOH A 27 436 27 HOH HOH . G 7 HOH A 28 437 28 HOH HOH . G 7 HOH A 29 438 29 HOH HOH . G 7 HOH A 30 439 30 HOH HOH . G 7 HOH A 31 440 31 HOH HOH . G 7 HOH A 32 441 32 HOH HOH . G 7 HOH A 33 442 33 HOH HOH . G 7 HOH A 34 443 34 HOH HOH . G 7 HOH A 35 444 35 HOH HOH . G 7 HOH A 36 445 36 HOH HOH . G 7 HOH A 37 446 37 HOH HOH . G 7 HOH A 38 447 38 HOH HOH . G 7 HOH A 39 448 39 HOH HOH . G 7 HOH A 40 449 40 HOH HOH . G 7 HOH A 41 450 41 HOH HOH . G 7 HOH A 42 451 42 HOH HOH . G 7 HOH A 43 452 44 HOH HOH . G 7 HOH A 44 453 45 HOH HOH . G 7 HOH A 45 454 46 HOH HOH . G 7 HOH A 46 455 47 HOH HOH . G 7 HOH A 47 456 48 HOH HOH . G 7 HOH A 48 457 49 HOH HOH . G 7 HOH A 49 458 50 HOH HOH . G 7 HOH A 50 459 51 HOH HOH . G 7 HOH A 51 460 52 HOH HOH . G 7 HOH A 52 461 53 HOH HOH . G 7 HOH A 53 462 54 HOH HOH . G 7 HOH A 54 463 55 HOH HOH . G 7 HOH A 55 464 57 HOH HOH . G 7 HOH A 56 465 58 HOH HOH . G 7 HOH A 57 466 59 HOH HOH . G 7 HOH A 58 467 60 HOH HOH . G 7 HOH A 59 468 61 HOH HOH . G 7 HOH A 60 469 62 HOH HOH . G 7 HOH A 61 470 63 HOH HOH . G 7 HOH A 62 471 65 HOH HOH . G 7 HOH A 63 472 66 HOH HOH . G 7 HOH A 64 473 68 HOH HOH . G 7 HOH A 65 474 69 HOH HOH . G 7 HOH A 66 475 70 HOH HOH . G 7 HOH A 67 476 71 HOH HOH . G 7 HOH A 68 477 72 HOH HOH . G 7 HOH A 69 478 73 HOH HOH . G 7 HOH A 70 479 74 HOH HOH . G 7 HOH A 71 480 75 HOH HOH . G 7 HOH A 72 481 76 HOH HOH . G 7 HOH A 73 482 77 HOH HOH . G 7 HOH A 74 483 78 HOH HOH . G 7 HOH A 75 484 79 HOH HOH . G 7 HOH A 76 485 81 HOH HOH . H 7 HOH B 1 43 43 HOH HOH . H 7 HOH B 2 56 56 HOH HOH . H 7 HOH B 3 64 64 HOH HOH . H 7 HOH B 4 67 67 HOH HOH . H 7 HOH B 5 80 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RDC . . . D 4 -48.834 21.52 66.002 1 40.11 ? C1 RDC 408 A 1 HETATM 2 C C2 RDC . . . D 4 -49.983 21.349 66.913 1 39.81 ? C2 RDC 408 A 1 HETATM 3 C C3 RDC . . . D 4 -50.733 22.58 67.216 1 35.64 ? C3 RDC 408 A 1 HETATM 4 C C4 RDC . . . D 4 -51.84 22.577 68.054 1 33.74 ? C4 RDC 408 A 1 HETATM 5 C C5 RDC . . . D 4 -52.225 21.357 68.579 1 37.17 ? C5 RDC 408 A 1 HETATM 6 C C6 RDC . . . D 4 -51.52 20.086 68.278 1 39.26 ? C6 RDC 408 A 1 HETATM 7 C C7 RDC . . . D 4 -50.36 20.025 67.462 1 38.62 ? C7 RDC 408 A 1 HETATM 8 C C8 RDC . . . D 4 -49.726 18.681 67.168 1 40.04 ? C8 RDC 408 A 1 HETATM 9 C C9 RDC . . . D 4 -49.271 17.895 68.381 1 45.3 ? C9 RDC 408 A 1 HETATM 10 C C10 RDC . . . D 4 -48.586 18.524 69.577 1 43.31 ? C10 RDC 408 A 1 HETATM 11 C C11 RDC . . . D 4 -47.643 19.445 69.354 1 44.06 ? C11 RDC 408 A 1 HETATM 12 C C12 RDC . . . D 4 -46.919 20.13 70.44 1 47.32 ? C12 RDC 408 A 1 HETATM 13 C C13 RDC . . . D 4 -46.286 21.307 70.284 1 46.01 ? C13 RDC 408 A 1 HETATM 14 C C14 RDC . . . D 4 -46.274 22.075 68.977 1 47.64 ? C14 RDC 408 A 1 HETATM 15 C C15 RDC . . . D 4 -45.185 21.657 67.961 1 46.51 ? C15 RDC 408 A 1 HETATM 16 C C16 RDC . . . D 4 -45.488 22.252 66.56 1 45.24 ? C16 RDC 408 A 1 HETATM 17 C C17 RDC . . . D 4 -46.427 21.382 65.731 1 44.47 ? C17 RDC 408 A 1 HETATM 18 C C18 RDC . . . D 4 -45.741 20.036 65.419 1 42.43 ? C18 RDC 408 A 1 HETATM 19 O O1 RDC . . . D 4 -47.591 21.078 66.516 1 41.96 ? O1 RDC 408 A 1 HETATM 20 O O2 RDC . . . D 4 -48.964 22.017 64.902 1 42.33 ? O2 RDC 408 A 1 HETATM 21 O O3 RDC . . . D 4 -50.238 23.691 66.601 1 38.33 ? O3 RDC 408 A 1 HETATM 22 O O4 RDC . . . D 4 -53.275 21.251 69.417 1 37.53 ? O4 RDC 408 A 1 HETATM 23 CL CL1 RDC . . . D 4 -52.014 18.527 68.921 1 44.43 ? CL1 RDC 408 A 1 HETATM 24 O O5 RDC . . . D 4 -49.456 16.7 68.334 1 44.67 ? O5 RDC 408 A 1 HETATM 25 O O6 RDC . . . D 4 -45.038 22.757 68.842 1 50.58 ? O6 RDC 408 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #