data_2Q9F
#
_model_server_result.job_id            TKj4E85La5uJeMUdxrT-3g 
_model_server_result.datetime_utc      '2024-11-23 01:12:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2q9f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":600}' 
#
_entry.id    2Q9F 
#
_exptl.entry_id    2Q9F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              466.717 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLEST-5-EN-3-YL HYDROGEN SULFATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Q9F 
_cell.length_a            121.85 
_cell.length_b            121.85 
_cell.length_c            144.03 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Q9F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             389 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              437 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            FE 
_struct_conn.ptnr2_label_comp_id            HEM 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             HEM 
_struct_conn.ptnr2_auth_seq_id              602 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.288 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C27 H46 O4 S' 
_chem_comp.formula_weight    466.717 
_chem_comp.id                C3S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLEST-5-EN-3-YL HYDROGEN SULFATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     CHOLESTEROL-SULFATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C65 C63 C3S sing 70 n n 
C65 H651 C3S sing 71 n n 
C65 H652 C3S sing 72 n n 
C65 H653 C3S sing 73 n n 
C63 C69 C3S sing 74 n n 
C63 C60 C3S sing 75 n n 
C63 H63 C3S sing 76 n n 
C69 H691 C3S sing 77 n n 
C69 H692 C3S sing 78 n n 
C69 H693 C3S sing 79 n n 
C60 C57 C3S sing 80 n n 
C60 H601 C3S sing 81 n n 
C60 H602 C3S sing 82 n n 
C57 C54 C3S sing 83 n n 
C57 H571 C3S sing 84 n n 
C57 H572 C3S sing 85 n n 
C54 C48 C3S sing 86 n n 
C54 H541 C3S sing 87 n n 
C54 H542 C3S sing 88 n n 
C48 C50 C3S sing 89 n n 
C48 C38 C3S sing 90 n n 
C48 H48 C3S sing 91 n n 
C50 H501 C3S sing 92 n n 
C50 H502 C3S sing 93 n n 
C50 H503 C3S sing 94 n n 
C38 C35 C3S sing 95 n n 
C38 C29 C3S sing 96 n n 
C38 H38 C3S sing 97 n n 
C35 C32 C3S sing 98 n n 
C35 H351 C3S sing 99 n n 
C35 H352 C3S sing 100 n n 
C29 C26 C3S sing 101 n n 
C29 C40 C3S sing 102 n n 
C29 C30 C3S sing 103 n n 
C26 C23 C3S sing 104 n n 
C26 H261 C3S sing 105 n n 
C26 H262 C3S sing 106 n n 
C40 H401 C3S sing 107 n n 
C40 H402 C3S sing 108 n n 
C40 H403 C3S sing 109 n n 
C30 C32 C3S sing 110 n n 
C30 C18 C3S sing 111 n n 
C30 H30 C3S sing 112 n n 
C32 H321 C3S sing 113 n n 
C32 H322 C3S sing 114 n n 
C18 C15 C3S sing 115 n n 
C18 C20 C3S sing 116 n n 
C18 H18 C3S sing 117 n n 
C15 C13 C3S sing 118 n n 
C15 H151 C3S sing 119 n n 
C15 H152 C3S sing 120 n n 
C20 C23 C3S sing 121 n n 
C20 C22 C3S sing 122 n n 
C20 H20 C3S sing 123 n n 
C23 H231 C3S sing 124 n n 
C23 H232 C3S sing 125 n n 
C22 C44 C3S sing 126 n n 
C22 C12 C3S sing 127 n n 
C22 C1 C3S sing 128 n n 
C44 H441 C3S sing 129 n n 
C44 H442 C3S sing 130 n n 
C44 H443 C3S sing 131 n n 
C12 C9 C3S sing 132 n n 
C12 C13 C3S doub 133 n n 
C9 C7 C3S sing 134 n n 
C9 H91 C3S sing 135 n n 
C9 H92 C3S sing 136 n n 
C13 H13 C3S sing 137 n n 
C1 C4 C3S sing 138 n n 
C1 H11 C3S sing 139 n n 
C1 H12 C3S sing 140 n n 
C4 C7 C3S sing 141 n n 
C4 H41 C3S sing 142 n n 
C4 H42 C3S sing 143 n n 
C7 O6 C3S sing 144 n n 
C7 H7 C3S sing 145 n n 
O6 S1 C3S sing 146 n n 
S1 O3 C3S sing 147 n n 
S1 O2 C3S doub 148 n n 
S1 O4 C3S doub 149 n n 
O3 HO3 C3S sing 150 n n 
#
_atom_sites.entry_id                     2Q9F 
_atom_sites.fract_transf_matrix[1][1]    0.008207 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008207 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006943 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 601 601 PO4 PO4 . 
C 3 HEM A 1 602 500 HEM HEM . 
D 4 C3S A 1 600 600 C3S C3S . 
E 5 GOL A 1 931 931 GOL GOL . 
F 5 GOL A 1 932 932 GOL GOL . 
G 5 GOL A 1 933 933 GOL GOL . 
H 5 GOL A 1 934 934 GOL GOL . 
I 5 GOL A 1 935 935 GOL GOL . 
J 5 GOL A 1 936 936 GOL GOL . 
K 6 HOH A 1 701 701 HOH HOH . 
K 6 HOH A 2 702 702 HOH HOH . 
K 6 HOH A 3 703 703 HOH HOH . 
K 6 HOH A 4 704 704 HOH HOH . 
K 6 HOH A 5 705 705 HOH HOH . 
K 6 HOH A 6 706 706 HOH HOH . 
K 6 HOH A 7 707 707 HOH HOH . 
K 6 HOH A 8 708 708 HOH HOH . 
K 6 HOH A 9 709 709 HOH HOH . 
K 6 HOH A 10 710 710 HOH HOH . 
K 6 HOH A 11 711 711 HOH HOH . 
K 6 HOH A 12 712 712 HOH HOH . 
K 6 HOH A 13 713 713 HOH HOH . 
K 6 HOH A 14 714 714 HOH HOH . 
K 6 HOH A 15 715 715 HOH HOH . 
K 6 HOH A 16 716 716 HOH HOH . 
K 6 HOH A 17 717 717 HOH HOH . 
K 6 HOH A 18 718 718 HOH HOH . 
K 6 HOH A 19 719 719 HOH HOH . 
K 6 HOH A 20 720 720 HOH HOH . 
K 6 HOH A 21 721 721 HOH HOH . 
K 6 HOH A 22 722 722 HOH HOH . 
K 6 HOH A 23 723 723 HOH HOH . 
K 6 HOH A 24 724 724 HOH HOH . 
K 6 HOH A 25 725 725 HOH HOH . 
K 6 HOH A 26 726 726 HOH HOH . 
K 6 HOH A 27 727 727 HOH HOH . 
K 6 HOH A 28 728 728 HOH HOH . 
K 6 HOH A 29 729 729 HOH HOH . 
K 6 HOH A 30 730 730 HOH HOH . 
K 6 HOH A 31 731 731 HOH HOH . 
K 6 HOH A 32 732 732 HOH HOH . 
K 6 HOH A 33 733 733 HOH HOH . 
K 6 HOH A 34 734 734 HOH HOH . 
K 6 HOH A 35 735 735 HOH HOH . 
K 6 HOH A 36 736 736 HOH HOH . 
K 6 HOH A 37 737 737 HOH HOH . 
K 6 HOH A 38 738 738 HOH HOH . 
K 6 HOH A 39 739 739 HOH HOH . 
K 6 HOH A 40 740 740 HOH HOH . 
K 6 HOH A 41 741 741 HOH HOH . 
K 6 HOH A 42 742 742 HOH HOH . 
K 6 HOH A 43 743 743 HOH HOH . 
K 6 HOH A 44 744 744 HOH HOH . 
K 6 HOH A 45 745 745 HOH HOH . 
K 6 HOH A 46 746 746 HOH HOH . 
K 6 HOH A 47 747 747 HOH HOH . 
K 6 HOH A 48 748 748 HOH HOH . 
K 6 HOH A 49 749 749 HOH HOH . 
K 6 HOH A 50 750 750 HOH HOH . 
K 6 HOH A 51 751 751 HOH HOH . 
K 6 HOH A 52 752 752 HOH HOH . 
K 6 HOH A 53 753 753 HOH HOH . 
K 6 HOH A 54 754 754 HOH HOH . 
K 6 HOH A 55 755 755 HOH HOH . 
K 6 HOH A 56 756 756 HOH HOH . 
K 6 HOH A 57 757 757 HOH HOH . 
K 6 HOH A 58 758 758 HOH HOH . 
K 6 HOH A 59 759 759 HOH HOH . 
K 6 HOH A 60 760 760 HOH HOH . 
K 6 HOH A 61 761 761 HOH HOH . 
K 6 HOH A 62 762 762 HOH HOH . 
K 6 HOH A 63 763 763 HOH HOH . 
K 6 HOH A 64 764 764 HOH HOH . 
K 6 HOH A 65 765 765 HOH HOH . 
K 6 HOH A 66 766 766 HOH HOH . 
K 6 HOH A 67 767 767 HOH HOH . 
K 6 HOH A 68 768 768 HOH HOH . 
K 6 HOH A 69 769 769 HOH HOH . 
K 6 HOH A 70 770 770 HOH HOH . 
K 6 HOH A 71 771 771 HOH HOH . 
K 6 HOH A 72 772 772 HOH HOH . 
K 6 HOH A 73 773 773 HOH HOH . 
K 6 HOH A 74 774 774 HOH HOH . 
K 6 HOH A 75 775 775 HOH HOH . 
K 6 HOH A 76 776 776 HOH HOH . 
K 6 HOH A 77 777 777 HOH HOH . 
K 6 HOH A 78 778 778 HOH HOH . 
K 6 HOH A 79 779 779 HOH HOH . 
K 6 HOH A 80 780 780 HOH HOH . 
K 6 HOH A 81 781 781 HOH HOH . 
K 6 HOH A 82 782 782 HOH HOH . 
K 6 HOH A 83 783 783 HOH HOH . 
K 6 HOH A 84 784 784 HOH HOH . 
K 6 HOH A 85 785 785 HOH HOH . 
K 6 HOH A 86 786 786 HOH HOH . 
K 6 HOH A 87 787 787 HOH HOH . 
K 6 HOH A 88 788 788 HOH HOH . 
K 6 HOH A 89 789 789 HOH HOH . 
K 6 HOH A 90 790 790 HOH HOH . 
K 6 HOH A 91 791 791 HOH HOH . 
K 6 HOH A 92 792 792 HOH HOH . 
K 6 HOH A 93 793 793 HOH HOH . 
K 6 HOH A 94 794 794 HOH HOH . 
K 6 HOH A 95 795 795 HOH HOH . 
K 6 HOH A 96 796 796 HOH HOH . 
K 6 HOH A 97 797 797 HOH HOH . 
K 6 HOH A 98 798 798 HOH HOH . 
K 6 HOH A 99 799 799 HOH HOH . 
K 6 HOH A 100 800 800 HOH HOH . 
K 6 HOH A 101 801 801 HOH HOH . 
K 6 HOH A 102 802 802 HOH HOH . 
K 6 HOH A 103 803 803 HOH HOH . 
K 6 HOH A 104 804 804 HOH HOH . 
K 6 HOH A 105 805 805 HOH HOH . 
K 6 HOH A 106 806 806 HOH HOH . 
K 6 HOH A 107 807 807 HOH HOH . 
K 6 HOH A 108 808 808 HOH HOH . 
K 6 HOH A 109 809 809 HOH HOH . 
K 6 HOH A 110 810 810 HOH HOH . 
K 6 HOH A 111 811 811 HOH HOH . 
K 6 HOH A 112 812 812 HOH HOH . 
K 6 HOH A 113 813 813 HOH HOH . 
K 6 HOH A 114 814 814 HOH HOH . 
K 6 HOH A 115 815 815 HOH HOH . 
K 6 HOH A 116 816 816 HOH HOH . 
K 6 HOH A 117 817 817 HOH HOH . 
K 6 HOH A 118 818 818 HOH HOH . 
K 6 HOH A 119 819 819 HOH HOH . 
K 6 HOH A 120 820 820 HOH HOH . 
K 6 HOH A 121 821 821 HOH HOH . 
K 6 HOH A 122 822 822 HOH HOH . 
K 6 HOH A 123 823 823 HOH HOH . 
K 6 HOH A 124 824 824 HOH HOH . 
K 6 HOH A 125 825 825 HOH HOH . 
K 6 HOH A 126 826 826 HOH HOH . 
K 6 HOH A 127 827 827 HOH HOH . 
K 6 HOH A 128 828 828 HOH HOH . 
K 6 HOH A 129 829 829 HOH HOH . 
K 6 HOH A 130 830 830 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C65 C3S . . . D 4 33.257 1.662 13.225 1 46.65 ? C65 C3S 600 A 1 
HETATM 2 C C63 C3S . . . D 4 32.118 2.105 12.305 1 46.48 ? C63 C3S 600 A 1 
HETATM 3 C C69 C3S . . . D 4 31.465 3.382 12.838 1 58.78 ? C69 C3S 600 A 1 
HETATM 4 C C60 C3S . . . D 4 31.083 0.994 12.113 1 46.97 ? C60 C3S 600 A 1 
HETATM 5 C C57 C3S . . . D 4 30.318 0.659 13.398 1 37.93 ? C57 C3S 600 A 1 
HETATM 6 C C54 C3S . . . D 4 29.38 -0.529 13.174 1 37.21 ? C54 C3S 600 A 1 
HETATM 7 C C48 C3S . . . D 4 28.765 -1.059 14.473 1 34.76 ? C48 C3S 600 A 1 
HETATM 8 C C50 C3S . . . D 4 29.872 -1.567 15.399 1 31.03 ? C50 C3S 600 A 1 
HETATM 9 C C38 C3S . . . D 4 27.87 -0.01 15.149 1 36.3 ? C38 C3S 600 A 1 
HETATM 10 C C35 C3S . . . D 4 26.676 0.385 14.263 1 38.08 ? C35 C3S 600 A 1 
HETATM 11 C C29 C3S . . . D 4 27.206 -0.438 16.463 1 34.66 ? C29 C3S 600 A 1 
HETATM 12 C C26 C3S . . . D 4 28.065 -0.393 17.73 1 36.45 ? C26 C3S 600 A 1 
HETATM 13 C C40 C3S . . . D 4 26.608 -1.837 16.273 1 33.69 ? C40 C3S 600 A 1 
HETATM 14 C C30 C3S . . . D 4 26.187 0.7 16.536 1 33.42 ? C30 C3S 600 A 1 
HETATM 15 C C32 C3S . . . D 4 25.465 0.549 15.197 1 34.73 ? C32 C3S 600 A 1 
HETATM 16 C C18 C3S . . . D 4 25.345 0.733 17.82 1 36.94 ? C18 C3S 600 A 1 
HETATM 17 C C15 C3S . . . D 4 24.198 1.519 17.881 1 36.93 ? C15 C3S 600 A 1 
HETATM 18 C C20 C3S . . . D 4 25.864 0.13 18.966 1 37.53 ? C20 C3S 600 A 1 
HETATM 19 C C23 C3S . . . D 4 27.216 -0.596 18.996 1 34.68 ? C23 C3S 600 A 1 
HETATM 20 C C22 C3S . . . D 4 24.955 -0.035 20.193 1 35.71 ? C22 C3S 600 A 1 
HETATM 21 C C44 C3S . . . D 4 24.507 -1.498 20.123 1 35.22 ? C44 C3S 600 A 1 
HETATM 22 C C12 C3S . . . D 4 23.719 0.87 20.165 1 34.9 ? C12 C3S 600 A 1 
HETATM 23 C C9 C3S . . . D 4 22.815 0.956 21.4 1 36.33 ? C9 C3S 600 A 1 
HETATM 24 C C13 C3S . . . D 4 23.402 1.596 19.023 1 36.54 ? C13 C3S 600 A 1 
HETATM 25 C C1 C3S . . . D 4 25.706 0.258 21.496 1 37.27 ? C1 C3S 600 A 1 
HETATM 26 C C4 C3S . . . D 4 24.786 0.177 22.72 1 37.48 ? C4 C3S 600 A 1 
HETATM 27 C C7 C3S . . . D 4 23.613 1.163 22.69 1 37.67 ? C7 C3S 600 A 1 
HETATM 28 O O6 C3S . . . D 4 22.803 0.926 23.852 1 45.25 ? O6 C3S 600 A 1 
HETATM 29 S S1 C3S . . . D 4 21.807 1.896 24.217 1 47.73 ? S1 C3S 600 A 1 
HETATM 30 O O3 C3S . . . D 4 21.447 1.669 25.654 1 52.05 ? O3 C3S 600 A 1 
HETATM 31 O O2 C3S . . . D 4 20.566 1.691 23.399 1 53.77 ? O2 C3S 600 A 1 
HETATM 32 O O4 C3S . . . D 4 22.295 3.294 23.991 1 52.17 ? O4 C3S 600 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#