data_2Q9F # _model_server_result.job_id QR-3pxqZ7ML5cuFN3JCZMQ _model_server_result.datetime_utc '2024-11-13 13:13:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q9f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 2Q9F # _exptl.entry_id 2Q9F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Q9F _cell.length_a 121.85 _cell.length_b 121.85 _cell.length_c 144.03 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q9F _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 389 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 437 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 602 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.288 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 223 n n CHA C4D HEM doub 224 n n CHA HHA HEM sing 225 n n CHB C4A HEM sing 226 n n CHB C1B HEM doub 227 n n CHB HHB HEM sing 228 n n CHC C4B HEM sing 229 n n CHC C1C HEM doub 230 n n CHC HHC HEM sing 231 n n CHD C4C HEM doub 232 n n CHD C1D HEM sing 233 n n CHD HHD HEM sing 234 n n C1A C2A HEM doub 235 n y C1A NA HEM sing 236 n y C2A C3A HEM sing 237 n y C2A CAA HEM sing 238 n n C3A C4A HEM doub 239 n y C3A CMA HEM sing 240 n n C4A NA HEM sing 241 n y CMA HMA HEM sing 242 n n CMA HMAA HEM sing 243 n n CMA HMAB HEM sing 244 n n CAA CBA HEM sing 245 n n CAA HAA HEM sing 246 n n CAA HAAA HEM sing 247 n n CBA CGA HEM sing 248 n n CBA HBA HEM sing 249 n n CBA HBAA HEM sing 250 n n CGA O1A HEM doub 251 n n CGA O2A HEM sing 252 n n C1B C2B HEM sing 253 n n C1B NB HEM sing 254 n n C2B C3B HEM doub 255 n n C2B CMB HEM sing 256 n n C3B C4B HEM sing 257 n n C3B CAB HEM sing 258 n n C4B NB HEM doub 259 n n CMB HMB HEM sing 260 n n CMB HMBA HEM sing 261 n n CMB HMBB HEM sing 262 n n CAB CBB HEM doub 263 n n CAB HAB HEM sing 264 n n CBB HBB HEM sing 265 n n CBB HBBA HEM sing 266 n n C1C C2C HEM sing 267 n y C1C NC HEM sing 268 n y C2C C3C HEM doub 269 n y C2C CMC HEM sing 270 n n C3C C4C HEM sing 271 n y C3C CAC HEM sing 272 n n C4C NC HEM sing 273 n y CMC HMC HEM sing 274 n n CMC HMCA HEM sing 275 n n CMC HMCB HEM sing 276 n n CAC CBC HEM doub 277 n n CAC HAC HEM sing 278 n n CBC HBC HEM sing 279 n n CBC HBCA HEM sing 280 n n C1D C2D HEM sing 281 n n C1D ND HEM doub 282 n n C2D C3D HEM doub 283 n n C2D CMD HEM sing 284 n n C3D C4D HEM sing 285 n n C3D CAD HEM sing 286 n n C4D ND HEM sing 287 n n CMD HMD HEM sing 288 n n CMD HMDA HEM sing 289 n n CMD HMDB HEM sing 290 n n CAD CBD HEM sing 291 n n CAD HAD HEM sing 292 n n CAD HADA HEM sing 293 n n CBD CGD HEM sing 294 n n CBD HBD HEM sing 295 n n CBD HBDA HEM sing 296 n n CGD O1D HEM doub 297 n n CGD O2D HEM sing 298 n n O2A H2A HEM sing 299 n n O2D H2D HEM sing 300 n n FE NA HEM sing 301 n n FE NB HEM sing 302 n n FE NC HEM sing 303 n n FE ND HEM sing 304 n n # _atom_sites.entry_id 2Q9F _atom_sites.fract_transf_matrix[1][1] 0.008207 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006943 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 601 601 PO4 PO4 . C 3 HEM A 1 602 500 HEM HEM . D 4 C3S A 1 600 600 C3S C3S . E 5 GOL A 1 931 931 GOL GOL . F 5 GOL A 1 932 932 GOL GOL . G 5 GOL A 1 933 933 GOL GOL . H 5 GOL A 1 934 934 GOL GOL . I 5 GOL A 1 935 935 GOL GOL . J 5 GOL A 1 936 936 GOL GOL . K 6 HOH A 1 701 701 HOH HOH . K 6 HOH A 2 702 702 HOH HOH . K 6 HOH A 3 703 703 HOH HOH . K 6 HOH A 4 704 704 HOH HOH . K 6 HOH A 5 705 705 HOH HOH . K 6 HOH A 6 706 706 HOH HOH . K 6 HOH A 7 707 707 HOH HOH . K 6 HOH A 8 708 708 HOH HOH . K 6 HOH A 9 709 709 HOH HOH . K 6 HOH A 10 710 710 HOH HOH . K 6 HOH A 11 711 711 HOH HOH . K 6 HOH A 12 712 712 HOH HOH . K 6 HOH A 13 713 713 HOH HOH . K 6 HOH A 14 714 714 HOH HOH . K 6 HOH A 15 715 715 HOH HOH . K 6 HOH A 16 716 716 HOH HOH . K 6 HOH A 17 717 717 HOH HOH . K 6 HOH A 18 718 718 HOH HOH . K 6 HOH A 19 719 719 HOH HOH . K 6 HOH A 20 720 720 HOH HOH . K 6 HOH A 21 721 721 HOH HOH . K 6 HOH A 22 722 722 HOH HOH . K 6 HOH A 23 723 723 HOH HOH . K 6 HOH A 24 724 724 HOH HOH . K 6 HOH A 25 725 725 HOH HOH . K 6 HOH A 26 726 726 HOH HOH . K 6 HOH A 27 727 727 HOH HOH . K 6 HOH A 28 728 728 HOH HOH . K 6 HOH A 29 729 729 HOH HOH . K 6 HOH A 30 730 730 HOH HOH . K 6 HOH A 31 731 731 HOH HOH . K 6 HOH A 32 732 732 HOH HOH . K 6 HOH A 33 733 733 HOH HOH . K 6 HOH A 34 734 734 HOH HOH . K 6 HOH A 35 735 735 HOH HOH . K 6 HOH A 36 736 736 HOH HOH . K 6 HOH A 37 737 737 HOH HOH . K 6 HOH A 38 738 738 HOH HOH . K 6 HOH A 39 739 739 HOH HOH . K 6 HOH A 40 740 740 HOH HOH . K 6 HOH A 41 741 741 HOH HOH . K 6 HOH A 42 742 742 HOH HOH . K 6 HOH A 43 743 743 HOH HOH . K 6 HOH A 44 744 744 HOH HOH . K 6 HOH A 45 745 745 HOH HOH . K 6 HOH A 46 746 746 HOH HOH . K 6 HOH A 47 747 747 HOH HOH . K 6 HOH A 48 748 748 HOH HOH . K 6 HOH A 49 749 749 HOH HOH . K 6 HOH A 50 750 750 HOH HOH . K 6 HOH A 51 751 751 HOH HOH . K 6 HOH A 52 752 752 HOH HOH . K 6 HOH A 53 753 753 HOH HOH . K 6 HOH A 54 754 754 HOH HOH . K 6 HOH A 55 755 755 HOH HOH . K 6 HOH A 56 756 756 HOH HOH . K 6 HOH A 57 757 757 HOH HOH . K 6 HOH A 58 758 758 HOH HOH . K 6 HOH A 59 759 759 HOH HOH . K 6 HOH A 60 760 760 HOH HOH . K 6 HOH A 61 761 761 HOH HOH . K 6 HOH A 62 762 762 HOH HOH . K 6 HOH A 63 763 763 HOH HOH . K 6 HOH A 64 764 764 HOH HOH . K 6 HOH A 65 765 765 HOH HOH . K 6 HOH A 66 766 766 HOH HOH . K 6 HOH A 67 767 767 HOH HOH . K 6 HOH A 68 768 768 HOH HOH . K 6 HOH A 69 769 769 HOH HOH . K 6 HOH A 70 770 770 HOH HOH . K 6 HOH A 71 771 771 HOH HOH . K 6 HOH A 72 772 772 HOH HOH . K 6 HOH A 73 773 773 HOH HOH . K 6 HOH A 74 774 774 HOH HOH . K 6 HOH A 75 775 775 HOH HOH . K 6 HOH A 76 776 776 HOH HOH . K 6 HOH A 77 777 777 HOH HOH . K 6 HOH A 78 778 778 HOH HOH . K 6 HOH A 79 779 779 HOH HOH . K 6 HOH A 80 780 780 HOH HOH . K 6 HOH A 81 781 781 HOH HOH . K 6 HOH A 82 782 782 HOH HOH . K 6 HOH A 83 783 783 HOH HOH . K 6 HOH A 84 784 784 HOH HOH . K 6 HOH A 85 785 785 HOH HOH . K 6 HOH A 86 786 786 HOH HOH . K 6 HOH A 87 787 787 HOH HOH . K 6 HOH A 88 788 788 HOH HOH . K 6 HOH A 89 789 789 HOH HOH . K 6 HOH A 90 790 790 HOH HOH . K 6 HOH A 91 791 791 HOH HOH . K 6 HOH A 92 792 792 HOH HOH . K 6 HOH A 93 793 793 HOH HOH . K 6 HOH A 94 794 794 HOH HOH . K 6 HOH A 95 795 795 HOH HOH . K 6 HOH A 96 796 796 HOH HOH . K 6 HOH A 97 797 797 HOH HOH . K 6 HOH A 98 798 798 HOH HOH . K 6 HOH A 99 799 799 HOH HOH . K 6 HOH A 100 800 800 HOH HOH . K 6 HOH A 101 801 801 HOH HOH . K 6 HOH A 102 802 802 HOH HOH . K 6 HOH A 103 803 803 HOH HOH . K 6 HOH A 104 804 804 HOH HOH . K 6 HOH A 105 805 805 HOH HOH . K 6 HOH A 106 806 806 HOH HOH . K 6 HOH A 107 807 807 HOH HOH . K 6 HOH A 108 808 808 HOH HOH . K 6 HOH A 109 809 809 HOH HOH . K 6 HOH A 110 810 810 HOH HOH . K 6 HOH A 111 811 811 HOH HOH . K 6 HOH A 112 812 812 HOH HOH . K 6 HOH A 113 813 813 HOH HOH . K 6 HOH A 114 814 814 HOH HOH . K 6 HOH A 115 815 815 HOH HOH . K 6 HOH A 116 816 816 HOH HOH . K 6 HOH A 117 817 817 HOH HOH . K 6 HOH A 118 818 818 HOH HOH . K 6 HOH A 119 819 819 HOH HOH . K 6 HOH A 120 820 820 HOH HOH . K 6 HOH A 121 821 821 HOH HOH . K 6 HOH A 122 822 822 HOH HOH . K 6 HOH A 123 823 823 HOH HOH . K 6 HOH A 124 824 824 HOH HOH . K 6 HOH A 125 825 825 HOH HOH . K 6 HOH A 126 826 826 HOH HOH . K 6 HOH A 127 827 827 HOH HOH . K 6 HOH A 128 828 828 HOH HOH . K 6 HOH A 129 829 829 HOH HOH . K 6 HOH A 130 830 830 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 30.172 1.804 7.236 1 29.35 ? CHA HEM 602 A 1 HETATM 2 C CHB HEM . . . C 3 32.053 -2.493 7.934 1 27.37 ? CHB HEM 602 A 1 HETATM 3 C CHC HEM . . . C 3 36.351 -0.771 6.756 1 26.61 ? CHC HEM 602 A 1 HETATM 4 C CHD HEM . . . C 3 34.555 3.586 6.397 1 28.22 ? CHD HEM 602 A 1 HETATM 5 C C1A HEM . . . C 3 30.366 0.492 7.827 1 27.77 ? C1A HEM 602 A 1 HETATM 6 C C2A HEM . . . C 3 29.335 -0.336 8.257 1 32.39 ? C2A HEM 602 A 1 HETATM 7 C C3A HEM . . . C 3 29.753 -1.654 8.082 1 28.13 ? C3A HEM 602 A 1 HETATM 8 C C4A HEM . . . C 3 31.085 -1.55 7.606 1 28.16 ? C4A HEM 602 A 1 HETATM 9 C CMA HEM . . . C 3 28.943 -2.968 8.431 1 26.67 ? CMA HEM 602 A 1 HETATM 10 C CAA HEM . . . C 3 27.988 0.129 8.909 1 36.12 ? CAA HEM 602 A 1 HETATM 11 C CBA HEM . . . C 3 26.804 0.453 8.386 1 46.51 ? CBA HEM 602 A 1 HETATM 12 C CGA HEM . . . C 3 25.849 0.629 9.619 1 38.69 ? CGA HEM 602 A 1 HETATM 13 O O1A HEM . . . C 3 25.868 1.496 10.621 1 33.62 ? O1A HEM 602 A 1 HETATM 14 O O2A HEM . . . C 3 25.073 -0.145 9.622 1 37.32 ? O2A HEM 602 A 1 HETATM 15 C C1B HEM . . . C 3 33.428 -2.464 7.784 1 29.32 ? C1B HEM 602 A 1 HETATM 16 C C2B HEM . . . C 3 34.325 -3.555 7.933 1 28.27 ? C2B HEM 602 A 1 HETATM 17 C C3B HEM . . . C 3 35.595 -3.012 7.595 1 26.76 ? C3B HEM 602 A 1 HETATM 18 C C4B HEM . . . C 3 35.385 -1.65 7.263 1 27 ? C4B HEM 602 A 1 HETATM 19 C CMB HEM . . . C 3 33.962 -5.015 8.374 1 28.2 ? CMB HEM 602 A 1 HETATM 20 C CAB HEM . . . C 3 36.817 -3.702 7.587 1 26.37 ? CAB HEM 602 A 1 HETATM 21 C CBB HEM . . . C 3 37.068 -5.078 7.245 1 26.32 ? CBB HEM 602 A 1 HETATM 22 C C1C HEM . . . C 3 36.28 0.57 6.456 1 27.95 ? C1C HEM 602 A 1 HETATM 23 C C2C HEM . . . C 3 37.358 1.359 6.01 1 27.34 ? C2C HEM 602 A 1 HETATM 24 C C3C HEM . . . C 3 36.862 2.703 5.914 1 28.62 ? C3C HEM 602 A 1 HETATM 25 C C4C HEM . . . C 3 35.5 2.59 6.313 1 28.87 ? C4C HEM 602 A 1 HETATM 26 C CMC HEM . . . C 3 38.779 0.847 5.684 1 28.52 ? CMC HEM 602 A 1 HETATM 27 C CAC HEM . . . C 3 37.476 3.943 5.515 1 29.96 ? CAC HEM 602 A 1 HETATM 28 C CBC HEM . . . C 3 38.742 4.12 4.899 1 31.27 ? CBC HEM 602 A 1 HETATM 29 C C1D HEM . . . C 3 33.244 3.515 6.736 1 29.16 ? C1D HEM 602 A 1 HETATM 30 C C2D HEM . . . C 3 32.362 4.625 6.666 1 29.83 ? C2D HEM 602 A 1 HETATM 31 C C3D HEM . . . C 3 31.071 4.13 6.761 1 29.36 ? C3D HEM 602 A 1 HETATM 32 C C4D HEM . . . C 3 31.215 2.718 6.913 1 28.75 ? C4D HEM 602 A 1 HETATM 33 C CMD HEM . . . C 3 32.761 6.134 6.502 1 33.49 ? CMD HEM 602 A 1 HETATM 34 C CAD HEM . . . C 3 29.71 4.884 6.705 1 29.82 ? CAD HEM 602 A 1 HETATM 35 C CBD HEM . . . C 3 29.281 4.831 5.177 1 33.11 ? CBD HEM 602 A 1 HETATM 36 C CGD HEM . . . C 3 27.977 5.5 4.799 1 36.17 ? CGD HEM 602 A 1 HETATM 37 O O1D HEM . . . C 3 27.877 6.126 3.726 1 33.24 ? O1D HEM 602 A 1 HETATM 38 O O2D HEM . . . C 3 27.015 5.408 5.576 1 33.28 ? O2D HEM 602 A 1 HETATM 39 N NA HEM . . . C 3 31.422 -0.269 7.453 1 26.54 ? NA HEM 602 A 1 HETATM 40 N NB HEM . . . C 3 34.104 -1.337 7.372 1 27.76 ? NB HEM 602 A 1 HETATM 41 N NC HEM . . . C 3 35.193 1.282 6.63 1 27.47 ? NC HEM 602 A 1 HETATM 42 N ND HEM . . . C 3 32.526 2.383 6.88 1 28.65 ? ND HEM 602 A 1 HETATM 43 FE FE HEM . . . C 3 33.293 0.467 6.938 1 28.88 ? FE HEM 602 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #