data_2Q9Y # _model_server_result.job_id b8rYDDMEhICTQ5DQoZVwow _model_server_result.datetime_utc '2024-11-27 17:16:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":700}' # _entry.id 2Q9Y # _exptl.entry_id 2Q9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Q9Y _cell.length_a 122.488 _cell.length_b 122.488 _cell.length_c 150.494 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD2 ASP 100 B ASP 100 1_555 F MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 B OD1 ASN 225 B ASN 225 1_555 D MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc3 G O5 POP . B POP 700 1_555 E MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc4 G O2 POP . B POP 700 1_555 F MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 305 n n P1 O2 POP sing 306 n n P1 O3 POP sing 307 n n P1 O POP sing 308 n n O2 HO2 POP sing 309 n n O P2 POP sing 310 n n P2 O4 POP doub 311 n n P2 O5 POP sing 312 n n P2 O6 POP sing 313 n n O5 HO5 POP sing 314 n n # _atom_sites.entry_id 2Q9Y _atom_sites.fract_transf_matrix[1][1] 0.008164 _atom_sites.fract_transf_matrix[1][2] 0.004714 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 802 802 EDO EDO . D 3 MG B 1 701 701 MG MG . E 3 MG B 1 702 702 MG MG . F 3 MG B 1 703 703 MG MG . G 4 POP B 1 700 700 POP POP . H 5 BTM B 1 704 704 BTM BTM . I 2 EDO B 1 801 801 EDO EDO . J 6 HOH A 1 900 900 HOH HOH . J 6 HOH A 2 902 902 HOH HOH . J 6 HOH A 3 903 903 HOH HOH . J 6 HOH A 4 906 906 HOH HOH . J 6 HOH A 5 907 907 HOH HOH . J 6 HOH A 6 909 909 HOH HOH . J 6 HOH A 7 911 911 HOH HOH . J 6 HOH A 8 912 912 HOH HOH . J 6 HOH A 9 913 913 HOH HOH . J 6 HOH A 10 914 914 HOH HOH . J 6 HOH A 11 915 915 HOH HOH . J 6 HOH A 12 917 917 HOH HOH . J 6 HOH A 13 919 919 HOH HOH . J 6 HOH A 14 920 920 HOH HOH . J 6 HOH A 15 921 921 HOH HOH . J 6 HOH A 16 925 925 HOH HOH . K 6 HOH B 1 901 901 HOH HOH . K 6 HOH B 2 904 904 HOH HOH . K 6 HOH B 3 905 905 HOH HOH . K 6 HOH B 4 908 908 HOH HOH . K 6 HOH B 5 910 910 HOH HOH . K 6 HOH B 6 916 916 HOH HOH . K 6 HOH B 7 918 918 HOH HOH . K 6 HOH B 8 922 922 HOH HOH . K 6 HOH B 9 923 923 HOH HOH . K 6 HOH B 10 924 924 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . G 4 -40.285 1.31 12.537 1 98.93 ? P1 POP 700 B 1 HETATM 2 O O1 POP . . . G 4 -39.065 2.194 12.688 1 98.34 ? O1 POP 700 B 1 HETATM 3 O O2 POP . . . G 4 -41.353 1.968 11.703 1 98.92 ? O2 POP 700 B 1 HETATM 4 O O3 POP . . . G 4 -40.834 0.967 13.862 1 98.48 ? O3 POP 700 B 1 HETATM 5 O O POP . . . G 4 -39.7 -0.11 12.081 1 100.55 ? O POP 700 B 1 HETATM 6 P P2 POP . . . G 4 -38.928 -0.394 10.651 1 102.65 ? P2 POP 700 B 1 HETATM 7 O O4 POP . . . G 4 -37.621 0.451 10.583 1 101.57 ? O4 POP 700 B 1 HETATM 8 O O5 POP . . . G 4 -39.918 -0.014 9.567 1 102.64 ? O5 POP 700 B 1 HETATM 9 O O6 POP . . . G 4 -38.636 -1.811 10.761 1 101.24 ? O6 POP 700 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #