data_2Q9Y # _model_server_result.job_id CcU_V-6rmRRtx_TrGY-mgg _model_server_result.datetime_utc '2024-11-23 23:41:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2q9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 2Q9Y # _exptl.entry_id 2Q9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Q9Y _cell.length_a 122.488 _cell.length_b 122.488 _cell.length_c 150.494 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Q9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD2 ASP 100 B ASP 100 1_555 F MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 B OD1 ASN 225 B ASN 225 1_555 D MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc3 G O5 POP . B POP 700 1_555 E MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc4 G O2 POP . B POP 700 1_555 F MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 119 n n C1 C2 EDO sing 120 n n C1 H11 EDO sing 121 n n C1 H12 EDO sing 122 n n O1 HO1 EDO sing 123 n n C2 O2 EDO sing 124 n n C2 H21 EDO sing 125 n n C2 H22 EDO sing 126 n n O2 HO2 EDO sing 127 n n # _atom_sites.entry_id 2Q9Y _atom_sites.fract_transf_matrix[1][1] 0.008164 _atom_sites.fract_transf_matrix[1][2] 0.004714 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 802 802 EDO EDO . D 3 MG B 1 701 701 MG MG . E 3 MG B 1 702 702 MG MG . F 3 MG B 1 703 703 MG MG . G 4 POP B 1 700 700 POP POP . H 5 BTM B 1 704 704 BTM BTM . I 2 EDO B 1 801 801 EDO EDO . J 6 HOH A 1 900 900 HOH HOH . J 6 HOH A 2 902 902 HOH HOH . J 6 HOH A 3 903 903 HOH HOH . J 6 HOH A 4 906 906 HOH HOH . J 6 HOH A 5 907 907 HOH HOH . J 6 HOH A 6 909 909 HOH HOH . J 6 HOH A 7 911 911 HOH HOH . J 6 HOH A 8 912 912 HOH HOH . J 6 HOH A 9 913 913 HOH HOH . J 6 HOH A 10 914 914 HOH HOH . J 6 HOH A 11 915 915 HOH HOH . J 6 HOH A 12 917 917 HOH HOH . J 6 HOH A 13 919 919 HOH HOH . J 6 HOH A 14 920 920 HOH HOH . J 6 HOH A 15 921 921 HOH HOH . J 6 HOH A 16 925 925 HOH HOH . K 6 HOH B 1 901 901 HOH HOH . K 6 HOH B 2 904 904 HOH HOH . K 6 HOH B 3 905 905 HOH HOH . K 6 HOH B 4 908 908 HOH HOH . K 6 HOH B 5 910 910 HOH HOH . K 6 HOH B 6 916 916 HOH HOH . K 6 HOH B 7 918 918 HOH HOH . K 6 HOH B 8 922 922 HOH HOH . K 6 HOH B 9 923 923 HOH HOH . K 6 HOH B 10 924 924 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 -61.364 0.705 27.737 1 58.28 ? C1 EDO 802 A 1 HETATM 2 O O1 EDO . . . C 2 -60.568 1.764 28.523 1 61.25 ? O1 EDO 802 A 1 HETATM 3 C C2 EDO . . . C 2 -61.022 -0.747 28.108 1 59.39 ? C2 EDO 802 A 1 HETATM 4 O O2 EDO . . . C 2 -60.895 -0.851 29.676 1 57.08 ? O2 EDO 802 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #