data_2QA0 # _model_server_result.job_id HnmIVd0Bb_JE7wGcuA_pOw _model_server_result.datetime_utc '2024-11-04 23:02:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qa0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 2QA0 # _exptl.entry_id 2QA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2QA0 _cell.length_a 254.84 _cell.length_b 254.84 _cell.length_c 445.43 _cell.Z_PDB 120 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 60-meric 60 'complete icosahedral assembly' 1 ? monomeric 1 'icosahedral asymmetric unit' 2 ? pentameric 5 'icosahedral pentamer' 3 ? hexameric 6 'icosahedral 23 hexamer' 4 ? monomeric 1 'icosahedral asymmetric unit, std point frame' 5 ? decameric 10 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 (1-60) A,B,C 2 1 A,B,C 3 (1-5) A,B,C 4 (1,2,6,10,23,24) A,B,C 5 P A,B,C 6 (X0)(1-5,21-25) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.467087 -0.809017 0.356822 -0.866025 0.5 -0.000001 -0.17841 -0.309017 -0.934173 -39.7338 147.13148 104.02734 X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.56366 0.755762 0.333333 -0.755762 0.309017 0.577349 0.333333 -0.577349 0.745357 74.07677 -18.82507 -56.58949 3 'point symmetry operation' ? ? -0.142352 0.467087 0.872678 -0.467087 -0.809017 0.356822 0.872678 -0.356822 0.333335 82.74048 -113.29864 -63.20797 4 'point symmetry operation' ? ? -0.142352 -0.467087 0.872678 0.467087 -0.809017 -0.356822 0.872678 0.356822 0.333335 14.01818 -152.86146 -10.70891 5 'point symmetry operation' ? ? 0.56366 -0.755762 0.333333 0.755762 0.309017 -0.577349 0.333333 0.577349 0.745357 -37.11825 -82.83905 28.35576 6 'point symmetry operation' ? ? -0.93634 0.110264 0.333332 0.110263 -0.809017 0.57735 0.333332 0.57735 0.745357 217.72095 -211.42212 28.35602 7 'point symmetry operation' ? ? -0.5 -0.866025 -0.000002 0.866025 -0.5 0.000001 -0.000002 -0.000001 1 127.42115 -220.69633 0.00013 8 'point symmetry operation' ? ? 0.372678 -0.645497 -0.666667 0.866025 0.5 0.000001 0.333333 -0.577351 0.745356 106.68584 -147.13148 -56.58946 9 'point symmetry operation' ? ? 0.475684 0.467087 -0.745356 0.110264 0.809017 0.57735 0.872678 -0.356822 0.333333 184.17051 -92.3917 -63.20786 10 'point symmetry operation' ? ? -0.333334 0.934172 -0.127323 -0.356823 0 0.934172 0.872677 0.356823 0.333334 252.79399 -132.1255 -10.70867 11 'point symmetry operation' ? ? 0.5 -0.866025 0.000002 -0.866025 -0.5 -0.000001 0.000002 -0.000001 -1 0.00081 0.00179 222.71473 12 'point symmetry operation' ? ? 0.93634 0.110263 -0.333332 -0.110263 -0.809017 -0.57735 -0.333332 0.57735 -0.745357 53.34209 -54.73799 279.30435 13 'point symmetry operation' ? ? 0.333334 0.934172 0.127323 0.356823 0 -0.934172 -0.872677 0.356823 -0.333334 139.49045 -15.00419 285.92292 14 'point symmetry operation' ? ? -0.475684 0.467087 0.745356 -0.110263 0.809017 -0.57735 -0.872678 -0.356822 -0.333333 139.39179 64.29243 233.4238 15 'point symmetry operation' ? ? -0.372678 -0.645497 0.666667 -0.866025 0.5 -0.000001 -0.333333 -0.577351 -0.745356 53.18245 73.56664 194.35899 16 'point symmetry operation' ? ? -0.56366 0.755762 -0.333333 0.755762 0.309017 -0.577349 -0.333333 -0.577349 -0.745357 291.95825 -82.83905 194.35923 17 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 254.84001 0 222.71499 18 'point symmetry operation' ? ? -0.56366 -0.755762 -0.333333 -0.755762 0.309017 0.577349 -0.333333 0.577349 -0.745357 180.76324 -18.82507 279.30448 19 'point symmetry operation' ? ? 0.142352 -0.467087 -0.872678 -0.467087 -0.809017 0.356822 -0.872677 0.356822 -0.333335 172.09953 -113.29864 285.92296 20 'point symmetry operation' ? ? 0.142352 0.467087 -0.872678 0.467087 -0.809017 -0.356822 -0.872677 -0.356822 -0.333335 240.82182 -152.86146 233.4239 21 'point symmetry operation' ? ? 0.642349 0.755762 0.127323 0.17841 -0.309017 0.934173 0.745357 -0.577349 -0.333332 86.99097 -223.05776 11.03054 22 'point symmetry operation' ? ? -0.166668 0.645497 0.745356 0.645497 -0.5 0.577351 0.745356 0.577351 -0.333332 113.14173 -256.8888 95.97594 23 'point symmetry operation' ? ? -0.333334 -0.356823 0.872677 0.934172 0 0.356823 -0.127323 0.934172 0.333334 46.46464 -232.33196 159.18392 24 'point symmetry operation' ? ? 0.372678 -0.866025 0.333333 0.645497 0.5 0.577351 -0.666667 -0.000001 0.745356 -20.89482 -183.32396 113.30321 25 'point symmetry operation' ? ? 0.975684 -0.17841 -0.127321 0.17841 0.309017 0.934173 -0.127321 -0.934173 0.333333 4.15183 -177.59218 21.73939 26 'point symmetry operation' ? ? -0.475684 -0.467087 0.745356 0.110264 0.809017 0.57735 -0.872678 0.356822 -0.333333 70.66949 -92.3917 285.92285 27 'point symmetry operation' ? ? 0.333334 -0.934172 0.127323 -0.356823 0 0.934172 -0.872677 -0.356823 -0.333334 2.04602 -132.1255 233.42366 28 'point symmetry operation' ? ? 0.93634 -0.110263 -0.333332 0.110263 -0.809017 0.57735 -0.333332 -0.57735 -0.745357 37.11905 -211.42212 194.35897 29 'point symmetry operation' ? ? 0.5 0.866025 0.000002 0.866025 -0.5 0.000001 0.000002 0.000001 -1 127.41885 -220.69632 222.71486 30 'point symmetry operation' ? ? -0.372678 0.645497 0.666667 0.866025 0.5 0.000001 -0.333333 0.577351 -0.745356 148.15416 -147.13148 279.30445 31 'point symmetry operation' ? ? -0.333334 -0.934172 -0.127323 0.356823 0 -0.934172 0.872677 -0.356823 0.333334 115.34955 -15.00419 -63.20793 32 'point symmetry operation' ? ? 0.475684 -0.467087 -0.745356 -0.110263 0.809017 -0.57735 0.872678 0.356822 0.333333 115.44822 64.29243 -10.70881 33 'point symmetry operation' ? ? 0.372678 0.645497 -0.666667 -0.866025 0.5 -0.000001 0.333333 0.577351 0.745356 201.65756 73.56664 28.356 34 'point symmetry operation' ? ? -0.5 0.866025 -0.000002 -0.866025 -0.5 -0.000001 -0.000002 0.000001 1 254.8392 0.00179 0.00026 35 'point symmetry operation' ? ? -0.93634 -0.110263 0.333332 -0.110263 -0.809017 -0.57735 0.333332 -0.57735 0.745357 201.49792 -54.73799 -56.58936 36 'point symmetry operation' ? ? 0.166668 0.645497 -0.745356 -0.645497 -0.5 -0.577351 -0.745356 0.577351 0.333332 236.66999 36.19427 211.68452 37 'point symmetry operation' ? ? -0.642349 0.755762 -0.127323 -0.17841 -0.309017 -0.934173 -0.745357 -0.577349 0.333332 279.04405 30.4625 126.7392 38 'point symmetry operation' ? ? -0.975684 -0.17841 0.127321 -0.17841 0.309017 -0.934173 0.127321 -0.934173 -0.333333 224.43876 75.92807 63.53109 39 'point symmetry operation' ? ? -0.372678 -0.866025 -0.333333 -0.645497 0.5 -0.577351 0.666667 -0.000001 -0.745356 148.31678 109.75911 109.41165 40 'point symmetry operation' ? ? 0.333334 -0.356823 -0.872677 -0.934172 0 -0.356823 0.127323 0.934172 -0.333334 155.8761 85.20227 200.9755 41 'point symmetry operation' ? ? 0.642349 0.17841 0.745357 0.755762 -0.309017 -0.577349 0.127323 0.934173 -0.333332 -24.30454 -128.30462 200.97532 42 'point symmetry operation' ? ? 0.475684 0.110264 0.872678 0.467087 0.809017 -0.356822 -0.745356 0.57735 0.333333 -22.25933 -33.83104 211.68425 43 'point symmetry operation' ? ? 0.475684 -0.110263 0.872678 -0.467087 0.809017 0.356822 -0.745356 -0.57735 0.333333 -38.48236 5.73177 126.73887 44 'point symmetry operation' ? ? 0.642349 -0.17841 0.745357 -0.755762 -0.309017 0.577349 0.127323 -0.934173 -0.333332 -50.55396 -64.29064 63.5308 45 'point symmetry operation' ? ? 0.745355 0 0.666668 0 -1 0 0.666668 0 -0.745355 -41.79159 -147.12969 109.41145 46 'point symmetry operation' ? ? -0.333334 0.356823 0.872677 -0.934172 0 -0.356823 -0.127323 -0.934172 0.333334 98.96391 85.20227 21.73949 47 'point symmetry operation' ? ? -0.166668 -0.645497 0.745356 -0.645497 -0.5 -0.577351 0.745356 -0.577351 -0.333332 18.17001 36.19427 11.03047 48 'point symmetry operation' ? ? 0.642349 -0.755762 0.127323 -0.17841 -0.309017 -0.934173 0.745357 0.577349 -0.333332 -24.20404 30.4625 95.97579 49 'point symmetry operation' ? ? 0.975684 0.17841 -0.127321 -0.17841 0.309017 -0.934173 -0.127321 0.934173 0.333333 30.40125 75.92807 159.1839 50 'point symmetry operation' ? ? 0.372678 0.866025 0.333333 -0.645497 0.5 -0.577351 -0.666667 0.000001 0.745356 106.52323 109.75911 113.30334 51 'point symmetry operation' ? ? 0.166668 -0.645497 -0.745356 0.645497 -0.5 0.577351 -0.745356 -0.577351 0.333332 141.69828 -256.8888 126.73905 52 'point symmetry operation' ? ? 0.333334 0.356823 -0.872677 0.934172 0 0.356823 0.127323 -0.934172 -0.333334 208.37536 -232.33196 63.53107 53 'point symmetry operation' ? ? -0.372678 0.866025 -0.333333 0.645497 0.5 0.577351 0.666667 0.000001 -0.745356 275.73482 -183.32396 109.41178 54 'point symmetry operation' ? ? -0.975684 0.17841 0.127321 0.17841 0.309017 0.934173 0.127321 0.934173 -0.333333 250.68817 -177.59219 200.9756 55 'point symmetry operation' ? ? -0.642349 -0.755762 -0.127323 0.17841 -0.309017 0.934173 -0.745357 0.577349 0.333332 167.84903 -223.05776 211.68445 56 'point symmetry operation' ? ? -0.475684 0.110264 -0.872678 -0.467087 0.809017 0.356822 0.745356 0.57735 -0.333333 293.32237 5.73177 95.97612 57 'point symmetry operation' ? ? -0.642349 0.17841 -0.745357 -0.755762 -0.309017 0.57735 -0.127323 0.934173 0.333332 305.39397 -64.29064 159.18419 58 'point symmetry operation' ? ? -0.745355 0 -0.666668 0 -1 0 -0.666668 0 0.745355 296.63159 -147.12969 113.30354 59 'point symmetry operation' ? ? -0.642349 -0.17841 -0.745357 0.755762 -0.309017 -0.577349 -0.127323 -0.934173 0.333332 279.14455 -128.30462 21.73967 60 'point symmetry operation' ? ? -0.475684 -0.110263 -0.872678 0.467087 0.809017 -0.356822 0.745356 -0.57735 -0.333333 277.09933 -33.83104 11.03074 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id NA _struct_conn.ptnr1_label_comp_id NA _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id NA _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id OH _struct_conn.ptnr2_label_comp_id TYR _struct_conn.ptnr2_label_seq_id 484 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id TYR _struct_conn.ptnr2_auth_seq_id 703 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.994 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2QA0 _atom_sites.fract_transf_matrix[1][1] 0.003924 _atom_sites.fract_transf_matrix[1][2] 0.002266 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1 1 NA NA . C 3 HOH A 1 739 739 HOH HOH . C 3 HOH A 2 740 740 HOH HOH . C 3 HOH A 3 741 741 HOH HOH . C 3 HOH A 4 742 742 HOH HOH . C 3 HOH A 5 743 743 HOH HOH . C 3 HOH A 6 744 744 HOH HOH . C 3 HOH A 7 745 745 HOH HOH . C 3 HOH A 8 746 746 HOH HOH . C 3 HOH A 9 747 747 HOH HOH . C 3 HOH A 10 748 748 HOH HOH . C 3 HOH A 11 749 749 HOH HOH . C 3 HOH A 12 750 750 HOH HOH . C 3 HOH A 13 751 751 HOH HOH . C 3 HOH A 14 752 752 HOH HOH . C 3 HOH A 15 753 753 HOH HOH . C 3 HOH A 16 754 754 HOH HOH . C 3 HOH A 17 755 755 HOH HOH . C 3 HOH A 18 756 756 HOH HOH . C 3 HOH A 19 757 757 HOH HOH . C 3 HOH A 20 758 758 HOH HOH . C 3 HOH A 21 759 759 HOH HOH . C 3 HOH A 22 760 760 HOH HOH . C 3 HOH A 23 761 761 HOH HOH . C 3 HOH A 24 762 762 HOH HOH . C 3 HOH A 25 763 763 HOH HOH . C 3 HOH A 26 764 764 HOH HOH . C 3 HOH A 27 765 765 HOH HOH . C 3 HOH A 28 766 766 HOH HOH . C 3 HOH A 29 767 767 HOH HOH . C 3 HOH A 30 768 768 HOH HOH . C 3 HOH A 31 769 769 HOH HOH . C 3 HOH A 32 770 770 HOH HOH . C 3 HOH A 33 771 771 HOH HOH . C 3 HOH A 34 772 772 HOH HOH . C 3 HOH A 35 773 773 HOH HOH . C 3 HOH A 36 774 774 HOH HOH . C 3 HOH A 37 775 775 HOH HOH . C 3 HOH A 38 776 776 HOH HOH . C 3 HOH A 39 777 777 HOH HOH . C 3 HOH A 40 778 778 HOH HOH . C 3 HOH A 41 779 779 HOH HOH . C 3 HOH A 42 780 780 HOH HOH . C 3 HOH A 43 781 781 HOH HOH . C 3 HOH A 44 782 782 HOH HOH . C 3 HOH A 45 783 783 HOH HOH . C 3 HOH A 46 784 784 HOH HOH . C 3 HOH A 47 785 785 HOH HOH . C 3 HOH A 48 786 786 HOH HOH . C 3 HOH A 49 787 787 HOH HOH . C 3 HOH A 50 788 788 HOH HOH . C 3 HOH A 51 789 789 HOH HOH . C 3 HOH A 52 790 790 HOH HOH . C 3 HOH A 53 791 791 HOH HOH . C 3 HOH A 54 792 792 HOH HOH . C 3 HOH A 55 793 793 HOH HOH . C 3 HOH A 56 794 794 HOH HOH . C 3 HOH A 57 795 795 HOH HOH . C 3 HOH A 58 796 796 HOH HOH . C 3 HOH A 59 797 797 HOH HOH . C 3 HOH A 60 798 798 HOH HOH . C 3 HOH A 61 799 799 HOH HOH . C 3 HOH A 62 800 800 HOH HOH . C 3 HOH A 63 801 801 HOH HOH . C 3 HOH A 64 802 802 HOH HOH . C 3 HOH A 65 803 803 HOH HOH . C 3 HOH A 66 804 804 HOH HOH . C 3 HOH A 67 805 805 HOH HOH . C 3 HOH A 68 806 806 HOH HOH . C 3 HOH A 69 807 807 HOH HOH . C 3 HOH A 70 808 808 HOH HOH . C 3 HOH A 71 809 809 HOH HOH . C 3 HOH A 72 810 810 HOH HOH . C 3 HOH A 73 811 811 HOH HOH . C 3 HOH A 74 812 812 HOH HOH . C 3 HOH A 75 813 813 HOH HOH . C 3 HOH A 76 814 814 HOH HOH . C 3 HOH A 77 815 815 HOH HOH . C 3 HOH A 78 816 816 HOH HOH . C 3 HOH A 79 817 817 HOH HOH . C 3 HOH A 80 818 818 HOH HOH . C 3 HOH A 81 819 819 HOH HOH . C 3 HOH A 82 820 820 HOH HOH . C 3 HOH A 83 821 821 HOH HOH . C 3 HOH A 84 822 822 HOH HOH . C 3 HOH A 85 823 823 HOH HOH . C 3 HOH A 86 824 824 HOH HOH . C 3 HOH A 87 825 825 HOH HOH . C 3 HOH A 88 826 826 HOH HOH . C 3 HOH A 89 827 827 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 99.725 _atom_site.Cartn_y -102.152 _atom_site.Cartn_z 9.739 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #