data_2QA8
#
_model_server_result.job_id            mwRy1coDE74WqiYQ3b9Vlg 
_model_server_result.datetime_utc      '2024-10-12 03:22:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qa8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":600}' 
#
_entry.id    2QA8 
#
_exptl.entry_id    2QA8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              270.237 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GENISTEIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.05 
_cell.angle_gamma         90 
_cell.entry_id            2QA8 
_cell.length_a            55.668 
_cell.length_b            77.957 
_cell.length_c            58 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QA8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 233 A LYS 529 1_555 A N CME 234 A CME 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C CME 234 A CME 530 1_555 A N LYS 235 A LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 B C GLU 84 B GLU 380 1_555 B N CME 85 B CME 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 B C CME 85 B CME 381 1_555 B N ALA 86 B ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C15 H10 O5' 
_chem_comp.formula_weight    270.237 
_chem_comp.id                GEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GENISTEIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "5,7-DIHYDROXY-3-(4-HYDROXYPHENYL)-4H-1-BENZOPYRAN-4-ONE;4',5,7-TRIHYDROXYISOFLAVONE;PRUNETOL;GENISTEOL" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GEN doub 104 n y 
C1 C10 GEN sing 105 n y 
C1 H1 GEN sing 106 n n 
C2 O2 GEN sing 107 n n 
C2 C3 GEN sing 108 n y 
O2 H2 GEN sing 109 n n 
C3 C4 GEN doub 110 n y 
C3 H3 GEN sing 111 n n 
C4 O4 GEN sing 112 n n 
C4 C5 GEN sing 113 n y 
O4 H4 GEN sing 114 n n 
C5 C6 GEN sing 115 n y 
C5 C10 GEN doub 116 n y 
C6 O6 GEN doub 117 n n 
C6 C7 GEN sing 118 n y 
C7 C8 GEN doub 119 n y 
C7 C11 GEN sing 120 n y 
C8 O9 GEN sing 121 n y 
C8 H8 GEN sing 122 n n 
O9 C10 GEN sing 123 n y 
C11 C12 GEN doub 124 n y 
C11 C16 GEN sing 125 n y 
C12 C13 GEN sing 126 n y 
C12 H12 GEN sing 127 n n 
C13 C14 GEN doub 128 n y 
C13 H13 GEN sing 129 n n 
C14 O14 GEN sing 130 n n 
C14 C15 GEN sing 131 n y 
O14 H14 GEN sing 132 n n 
C15 C16 GEN doub 133 n y 
C15 H15 GEN sing 134 n n 
C16 H16 GEN sing 135 n n 
#
_atom_sites.entry_id                     2QA8 
_atom_sites.fract_transf_matrix[1][1]    0.017964 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006204 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012828 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018241 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 GEN A 1 600 600 GEN GEN . 
F 4 GEN B 1 600 600 GEN GEN . 
G 5 HOH A 1 601 601 HOH HOH . 
G 5 HOH A 2 602 602 HOH HOH . 
G 5 HOH A 3 603 603 HOH HOH . 
G 5 HOH A 4 604 604 HOH HOH . 
G 5 HOH A 5 605 605 HOH HOH . 
G 5 HOH A 6 606 606 HOH HOH . 
G 5 HOH A 7 607 607 HOH HOH . 
G 5 HOH A 8 608 608 HOH HOH . 
G 5 HOH A 9 609 609 HOH HOH . 
G 5 HOH A 10 610 610 HOH HOH . 
G 5 HOH A 11 612 612 HOH HOH . 
G 5 HOH A 12 618 618 HOH HOH . 
G 5 HOH A 13 619 619 HOH HOH . 
G 5 HOH A 14 620 620 HOH HOH . 
G 5 HOH A 15 621 621 HOH HOH . 
G 5 HOH A 16 622 622 HOH HOH . 
G 5 HOH A 17 623 623 HOH HOH . 
G 5 HOH A 18 624 624 HOH HOH . 
G 5 HOH A 19 625 625 HOH HOH . 
G 5 HOH A 20 629 629 HOH HOH . 
G 5 HOH A 21 630 630 HOH HOH . 
G 5 HOH A 22 631 631 HOH HOH . 
G 5 HOH A 23 632 632 HOH HOH . 
G 5 HOH A 24 633 633 HOH HOH . 
G 5 HOH A 25 634 634 HOH HOH . 
G 5 HOH A 26 642 642 HOH HOH . 
G 5 HOH A 27 643 643 HOH HOH . 
G 5 HOH A 28 644 644 HOH HOH . 
G 5 HOH A 29 645 645 HOH HOH . 
G 5 HOH A 30 646 646 HOH HOH . 
G 5 HOH A 31 653 653 HOH HOH . 
G 5 HOH A 32 654 654 HOH HOH . 
G 5 HOH A 33 655 655 HOH HOH . 
G 5 HOH A 34 656 656 HOH HOH . 
G 5 HOH A 35 657 657 HOH HOH . 
G 5 HOH A 36 662 662 HOH HOH . 
G 5 HOH A 37 663 663 HOH HOH . 
G 5 HOH A 38 664 664 HOH HOH . 
H 5 HOH B 1 611 611 HOH HOH . 
H 5 HOH B 2 613 613 HOH HOH . 
H 5 HOH B 3 614 614 HOH HOH . 
H 5 HOH B 4 615 615 HOH HOH . 
H 5 HOH B 5 616 616 HOH HOH . 
H 5 HOH B 6 617 617 HOH HOH . 
H 5 HOH B 7 626 626 HOH HOH . 
H 5 HOH B 8 627 627 HOH HOH . 
H 5 HOH B 9 628 628 HOH HOH . 
H 5 HOH B 10 635 635 HOH HOH . 
H 5 HOH B 11 636 636 HOH HOH . 
H 5 HOH B 12 637 637 HOH HOH . 
H 5 HOH B 13 638 638 HOH HOH . 
H 5 HOH B 14 639 639 HOH HOH . 
H 5 HOH B 15 640 640 HOH HOH . 
H 5 HOH B 16 641 641 HOH HOH . 
H 5 HOH B 17 647 647 HOH HOH . 
H 5 HOH B 18 648 648 HOH HOH . 
H 5 HOH B 19 649 649 HOH HOH . 
H 5 HOH B 20 650 650 HOH HOH . 
H 5 HOH B 21 651 651 HOH HOH . 
H 5 HOH B 22 652 652 HOH HOH . 
H 5 HOH B 23 658 658 HOH HOH . 
H 5 HOH B 24 659 659 HOH HOH . 
H 5 HOH B 25 660 660 HOH HOH . 
H 5 HOH B 26 661 661 HOH HOH . 
H 5 HOH B 27 665 665 HOH HOH . 
H 5 HOH B 28 666 666 HOH HOH . 
H 5 HOH B 29 667 667 HOH HOH . 
H 5 HOH B 30 668 668 HOH HOH . 
H 5 HOH B 31 669 669 HOH HOH . 
H 5 HOH B 32 670 670 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GEN . . . E 4 -8.528 -3.693 17.792 1 37.22 ? C1 GEN 600 A 1 
HETATM 2 C C2 GEN . . . E 4 -8.412 -4.385 16.591 1 27.03 ? C2 GEN 600 A 1 
HETATM 3 O O2 GEN . . . E 4 -9.368 -4.262 15.646 1 20.91 ? O2 GEN 600 A 1 
HETATM 4 C C3 GEN . . . E 4 -7.317 -5.2 16.365 1 16.34 ? C3 GEN 600 A 1 
HETATM 5 C C4 GEN . . . E 4 -6.331 -5.322 17.344 1 24.19 ? C4 GEN 600 A 1 
HETATM 6 O O4 GEN . . . E 4 -5.258 -6.109 17.117 1 35.79 ? O4 GEN 600 A 1 
HETATM 7 C C5 GEN . . . E 4 -6.439 -4.646 18.557 1 33.98 ? C5 GEN 600 A 1 
HETATM 8 C C6 GEN . . . E 4 -5.389 -4.774 19.63 1 35.14 ? C6 GEN 600 A 1 
HETATM 9 O O6 GEN . . . E 4 -4.393 -5.501 19.483 1 24.53 ? O6 GEN 600 A 1 
HETATM 10 C C7 GEN . . . E 4 -5.587 -4.028 20.901 1 28.91 ? C7 GEN 600 A 1 
HETATM 11 C C8 GEN . . . E 4 -6.725 -3.225 21.002 1 18.49 ? C8 GEN 600 A 1 
HETATM 12 O O9 GEN . . . E 4 -7.691 -3.147 19.965 1 29.85 ? O9 GEN 600 A 1 
HETATM 13 C C10 GEN . . . E 4 -7.547 -3.824 18.775 1 31.48 ? C10 GEN 600 A 1 
HETATM 14 C C11 GEN . . . E 4 -4.638 -3.997 22.052 1 23.71 ? C11 GEN 600 A 1 
HETATM 15 C C12 GEN . . . E 4 -5.152 -3.759 23.32 1 16.39 ? C12 GEN 600 A 1 
HETATM 16 C C13 GEN . . . E 4 -4.323 -3.659 24.404 1 18.53 ? C13 GEN 600 A 1 
HETATM 17 C C14 GEN . . . E 4 -2.941 -3.754 24.259 1 21.08 ? C14 GEN 600 A 1 
HETATM 18 O O14 GEN . . . E 4 -2.164 -3.625 25.376 1 19.76 ? O14 GEN 600 A 1 
HETATM 19 C C15 GEN . . . E 4 -2.4 -3.947 22.983 1 19.25 ? C15 GEN 600 A 1 
HETATM 20 C C16 GEN . . . E 4 -3.247 -4.047 21.882 1 23.56 ? C16 GEN 600 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#