data_2QA8 # _model_server_result.job_id uDacAnihseRNuuIEvi1zMw _model_server_result.datetime_utc '2024-12-05 04:09:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qa8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":600}' # _entry.id 2QA8 # _exptl.entry_id 2QA8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GENISTEIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.05 _cell.angle_gamma 90 _cell.entry_id 2QA8 _cell.length_a 55.668 _cell.length_b 77.957 _cell.length_c 58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QA8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 233 A LYS 529 1_555 A N CME 234 A CME 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C CME 234 A CME 530 1_555 A N LYS 235 A LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C GLU 84 B GLU 380 1_555 B N CME 85 B CME 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 B C CME 85 B CME 381 1_555 B N ALA 86 B ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id GEN _chem_comp.mon_nstd_flag . _chem_comp.name GENISTEIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "5,7-DIHYDROXY-3-(4-HYDROXYPHENYL)-4H-1-BENZOPYRAN-4-ONE;4',5,7-TRIHYDROXYISOFLAVONE;PRUNETOL;GENISTEOL" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GEN doub 104 n y C1 C10 GEN sing 105 n y C1 H1 GEN sing 106 n n C2 O2 GEN sing 107 n n C2 C3 GEN sing 108 n y O2 H2 GEN sing 109 n n C3 C4 GEN doub 110 n y C3 H3 GEN sing 111 n n C4 O4 GEN sing 112 n n C4 C5 GEN sing 113 n y O4 H4 GEN sing 114 n n C5 C6 GEN sing 115 n y C5 C10 GEN doub 116 n y C6 O6 GEN doub 117 n n C6 C7 GEN sing 118 n y C7 C8 GEN doub 119 n y C7 C11 GEN sing 120 n y C8 O9 GEN sing 121 n y C8 H8 GEN sing 122 n n O9 C10 GEN sing 123 n y C11 C12 GEN doub 124 n y C11 C16 GEN sing 125 n y C12 C13 GEN sing 126 n y C12 H12 GEN sing 127 n n C13 C14 GEN doub 128 n y C13 H13 GEN sing 129 n n C14 O14 GEN sing 130 n n C14 C15 GEN sing 131 n y O14 H14 GEN sing 132 n n C15 C16 GEN doub 133 n y C15 H15 GEN sing 134 n n C16 H16 GEN sing 135 n n # _atom_sites.entry_id 2QA8 _atom_sites.fract_transf_matrix[1][1] 0.017964 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006204 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GEN A 1 600 600 GEN GEN . F 4 GEN B 1 600 600 GEN GEN . G 5 HOH A 1 601 601 HOH HOH . G 5 HOH A 2 602 602 HOH HOH . G 5 HOH A 3 603 603 HOH HOH . G 5 HOH A 4 604 604 HOH HOH . G 5 HOH A 5 605 605 HOH HOH . G 5 HOH A 6 606 606 HOH HOH . G 5 HOH A 7 607 607 HOH HOH . G 5 HOH A 8 608 608 HOH HOH . G 5 HOH A 9 609 609 HOH HOH . G 5 HOH A 10 610 610 HOH HOH . G 5 HOH A 11 612 612 HOH HOH . G 5 HOH A 12 618 618 HOH HOH . G 5 HOH A 13 619 619 HOH HOH . G 5 HOH A 14 620 620 HOH HOH . G 5 HOH A 15 621 621 HOH HOH . G 5 HOH A 16 622 622 HOH HOH . G 5 HOH A 17 623 623 HOH HOH . G 5 HOH A 18 624 624 HOH HOH . G 5 HOH A 19 625 625 HOH HOH . G 5 HOH A 20 629 629 HOH HOH . G 5 HOH A 21 630 630 HOH HOH . G 5 HOH A 22 631 631 HOH HOH . G 5 HOH A 23 632 632 HOH HOH . G 5 HOH A 24 633 633 HOH HOH . G 5 HOH A 25 634 634 HOH HOH . G 5 HOH A 26 642 642 HOH HOH . G 5 HOH A 27 643 643 HOH HOH . G 5 HOH A 28 644 644 HOH HOH . G 5 HOH A 29 645 645 HOH HOH . G 5 HOH A 30 646 646 HOH HOH . G 5 HOH A 31 653 653 HOH HOH . G 5 HOH A 32 654 654 HOH HOH . G 5 HOH A 33 655 655 HOH HOH . G 5 HOH A 34 656 656 HOH HOH . G 5 HOH A 35 657 657 HOH HOH . G 5 HOH A 36 662 662 HOH HOH . G 5 HOH A 37 663 663 HOH HOH . G 5 HOH A 38 664 664 HOH HOH . H 5 HOH B 1 611 611 HOH HOH . H 5 HOH B 2 613 613 HOH HOH . H 5 HOH B 3 614 614 HOH HOH . H 5 HOH B 4 615 615 HOH HOH . H 5 HOH B 5 616 616 HOH HOH . H 5 HOH B 6 617 617 HOH HOH . H 5 HOH B 7 626 626 HOH HOH . H 5 HOH B 8 627 627 HOH HOH . H 5 HOH B 9 628 628 HOH HOH . H 5 HOH B 10 635 635 HOH HOH . H 5 HOH B 11 636 636 HOH HOH . H 5 HOH B 12 637 637 HOH HOH . H 5 HOH B 13 638 638 HOH HOH . H 5 HOH B 14 639 639 HOH HOH . H 5 HOH B 15 640 640 HOH HOH . H 5 HOH B 16 641 641 HOH HOH . H 5 HOH B 17 647 647 HOH HOH . H 5 HOH B 18 648 648 HOH HOH . H 5 HOH B 19 649 649 HOH HOH . H 5 HOH B 20 650 650 HOH HOH . H 5 HOH B 21 651 651 HOH HOH . H 5 HOH B 22 652 652 HOH HOH . H 5 HOH B 23 658 658 HOH HOH . H 5 HOH B 24 659 659 HOH HOH . H 5 HOH B 25 660 660 HOH HOH . H 5 HOH B 26 661 661 HOH HOH . H 5 HOH B 27 665 665 HOH HOH . H 5 HOH B 28 666 666 HOH HOH . H 5 HOH B 29 667 667 HOH HOH . H 5 HOH B 30 668 668 HOH HOH . H 5 HOH B 31 669 669 HOH HOH . H 5 HOH B 32 670 670 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GEN . . . F 4 -1.191 3.097 -6.202 1 21.55 ? C1 GEN 600 B 1 HETATM 2 C C2 GEN . . . F 4 -1.858 3.767 -5.193 1 34.14 ? C2 GEN 600 B 1 HETATM 3 O O2 GEN . . . F 4 -3.184 3.536 -5.02 1 30.88 ? O2 GEN 600 B 1 HETATM 4 C C3 GEN . . . F 4 -1.184 4.686 -4.378 1 37.78 ? C3 GEN 600 B 1 HETATM 5 C C4 GEN . . . F 4 0.171 4.928 -4.575 1 30.84 ? C4 GEN 600 B 1 HETATM 6 O O4 GEN . . . F 4 0.862 5.822 -3.811 1 36.9 ? O4 GEN 600 B 1 HETATM 7 C C5 GEN . . . F 4 0.844 4.255 -5.591 1 46.08 ? C5 GEN 600 B 1 HETATM 8 C C6 GEN . . . F 4 2.302 4.515 -5.796 1 30.23 ? C6 GEN 600 B 1 HETATM 9 O O6 GEN . . . F 4 2.904 5.355 -5.069 1 36.11 ? O6 GEN 600 B 1 HETATM 10 C C7 GEN . . . F 4 2.97 3.779 -6.904 1 32.73 ? C7 GEN 600 B 1 HETATM 11 C C8 GEN . . . F 4 2.217 2.875 -7.652 1 18.33 ? C8 GEN 600 B 1 HETATM 12 O O9 GEN . . . F 4 0.822 2.667 -7.403 1 38.55 ? O9 GEN 600 B 1 HETATM 13 C C10 GEN . . . F 4 0.164 3.337 -6.402 1 38.76 ? C10 GEN 600 B 1 HETATM 14 C C11 GEN . . . F 4 4.41 3.922 -7.263 1 29.46 ? C11 GEN 600 B 1 HETATM 15 C C12 GEN . . . F 4 5.371 4.388 -6.367 1 22.15 ? C12 GEN 600 B 1 HETATM 16 C C13 GEN . . . F 4 6.683 4.49 -6.786 1 11.89 ? C13 GEN 600 B 1 HETATM 17 C C14 GEN . . . F 4 7.063 4.102 -8.079 1 34.9 ? C14 GEN 600 B 1 HETATM 18 O O14 GEN . . . F 4 8.371 4.168 -8.481 1 25.4 ? O14 GEN 600 B 1 HETATM 19 C C15 GEN . . . F 4 6.101 3.639 -8.972 1 30.54 ? C15 GEN 600 B 1 HETATM 20 C C16 GEN . . . F 4 4.781 3.555 -8.557 1 39.03 ? C16 GEN 600 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #