data_2QB4 # _model_server_result.job_id H7oK6soeXms4w5BAJ9P96g _model_server_result.datetime_utc '2024-11-27 19:17:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qb4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 2QB4 # _exptl.entry_id 2QB4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.02 _cell.angle_gamma 90 _cell.entry_id 2QB4 _cell.length_a 88.29 _cell.length_b 86.77 _cell.length_c 81.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QB4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,B,C,D,E,F,G,H,I,J,K,L 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 79.768857 0 80.801934 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc5 A OG1 THR 254 A THR 254 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc6 A O THR 254 A THR 254 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc11 I OXT LEU . A LEU 601 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2QB4 _atom_sites.fract_transf_matrix[1][1] 0.011326 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001194 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011525 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 701 701 BOG BOG . C 2 BOG A 1 702 702 BOG BOG . D 2 BOG A 1 703 703 BOG BOG . E 2 BOG A 1 704 704 BOG BOG . F 2 BOG A 1 705 705 BOG BOG . G 3 NA A 1 751 751 NA NA . H 3 NA A 1 752 752 NA NA . I 4 LEU A 1 601 601 LEU LEU . J 5 DSM A 1 801 801 DSM DMI . K 5 DSM A 1 802 802 DSM DMI . L 6 HOH A 1 901 901 HOH HOH . L 6 HOH A 2 902 902 HOH HOH . L 6 HOH A 3 903 903 HOH HOH . L 6 HOH A 4 904 904 HOH HOH . L 6 HOH A 5 905 905 HOH HOH . L 6 HOH A 6 906 906 HOH HOH . L 6 HOH A 7 907 907 HOH HOH . L 6 HOH A 8 908 908 HOH HOH . L 6 HOH A 9 909 909 HOH HOH . L 6 HOH A 10 910 910 HOH HOH . L 6 HOH A 11 911 911 HOH HOH . L 6 HOH A 12 912 912 HOH HOH . L 6 HOH A 13 913 913 HOH HOH . L 6 HOH A 14 914 914 HOH HOH . L 6 HOH A 15 915 915 HOH HOH . L 6 HOH A 16 916 916 HOH HOH . L 6 HOH A 17 917 917 HOH HOH . L 6 HOH A 18 918 918 HOH HOH . L 6 HOH A 19 919 919 HOH HOH . L 6 HOH A 20 920 920 HOH HOH . L 6 HOH A 21 921 921 HOH HOH . L 6 HOH A 22 922 922 HOH HOH . L 6 HOH A 23 923 923 HOH HOH . L 6 HOH A 24 924 924 HOH HOH . L 6 HOH A 25 925 925 HOH HOH . L 6 HOH A 26 926 926 HOH HOH . L 6 HOH A 27 927 927 HOH HOH . L 6 HOH A 28 928 928 HOH HOH . L 6 HOH A 29 929 929 HOH HOH . L 6 HOH A 30 930 930 HOH HOH . L 6 HOH A 31 931 931 HOH HOH . L 6 HOH A 32 932 932 HOH HOH . L 6 HOH A 33 933 933 HOH HOH . L 6 HOH A 34 934 934 HOH HOH . L 6 HOH A 35 935 935 HOH HOH . L 6 HOH A 36 936 936 HOH HOH . L 6 HOH A 37 937 937 HOH HOH . L 6 HOH A 38 938 938 HOH HOH . L 6 HOH A 39 939 939 HOH HOH . L 6 HOH A 40 940 940 HOH HOH . L 6 HOH A 41 941 941 HOH HOH . L 6 HOH A 42 942 942 HOH HOH . L 6 HOH A 43 943 943 HOH HOH . L 6 HOH A 44 944 944 HOH HOH . L 6 HOH A 45 945 945 HOH HOH . L 6 HOH A 46 946 946 HOH HOH . L 6 HOH A 47 947 947 HOH HOH . L 6 HOH A 48 948 948 HOH HOH . L 6 HOH A 49 949 949 HOH HOH . L 6 HOH A 50 950 950 HOH HOH . L 6 HOH A 51 951 951 HOH HOH . L 6 HOH A 52 952 952 HOH HOH . L 6 HOH A 53 953 953 HOH HOH . L 6 HOH A 54 954 954 HOH HOH . L 6 HOH A 55 955 955 HOH HOH . L 6 HOH A 56 956 956 HOH HOH . L 6 HOH A 57 957 957 HOH HOH . L 6 HOH A 58 958 958 HOH HOH . L 6 HOH A 59 959 959 HOH HOH . L 6 HOH A 60 960 960 HOH HOH . L 6 HOH A 61 961 961 HOH HOH . L 6 HOH A 62 962 962 HOH HOH . L 6 HOH A 63 963 963 HOH HOH . L 6 HOH A 64 964 964 HOH HOH . L 6 HOH A 65 965 965 HOH HOH . L 6 HOH A 66 966 966 HOH HOH . L 6 HOH A 67 967 967 HOH HOH . L 6 HOH A 68 968 968 HOH HOH . L 6 HOH A 69 969 969 HOH HOH . L 6 HOH A 70 970 970 HOH HOH . L 6 HOH A 71 971 971 HOH HOH . L 6 HOH A 72 972 972 HOH HOH . L 6 HOH A 73 973 973 HOH HOH . L 6 HOH A 74 974 974 HOH HOH . L 6 HOH A 75 975 975 HOH HOH . L 6 HOH A 76 976 976 HOH HOH . L 6 HOH A 77 977 977 HOH HOH . L 6 HOH A 78 978 978 HOH HOH . L 6 HOH A 79 979 979 HOH HOH . L 6 HOH A 80 980 980 HOH HOH . L 6 HOH A 81 981 981 HOH HOH . L 6 HOH A 82 982 982 HOH HOH . L 6 HOH A 83 983 983 HOH HOH . L 6 HOH A 84 984 984 HOH HOH . L 6 HOH A 85 985 985 HOH HOH . L 6 HOH A 86 986 986 HOH HOH . L 6 HOH A 87 987 987 HOH HOH . L 6 HOH A 88 988 988 HOH HOH . L 6 HOH A 89 989 989 HOH HOH . L 6 HOH A 90 990 990 HOH HOH . L 6 HOH A 91 991 991 HOH HOH . L 6 HOH A 92 992 992 HOH HOH . L 6 HOH A 93 993 993 HOH HOH . L 6 HOH A 94 994 994 HOH HOH . L 6 HOH A 95 995 995 HOH HOH . L 6 HOH A 96 996 996 HOH HOH . L 6 HOH A 97 997 997 HOH HOH . L 6 HOH A 98 998 998 HOH HOH . L 6 HOH A 99 999 999 HOH HOH . L 6 HOH A 100 1000 1000 HOH HOH . L 6 HOH A 101 1001 1001 HOH HOH . L 6 HOH A 102 1002 1002 HOH HOH . L 6 HOH A 103 1003 1003 HOH HOH . L 6 HOH A 104 1004 1004 HOH HOH . L 6 HOH A 105 1005 1005 HOH HOH . L 6 HOH A 106 1006 1006 HOH HOH . L 6 HOH A 107 1007 1007 HOH HOH . L 6 HOH A 108 1008 1008 HOH HOH . L 6 HOH A 109 1009 1009 HOH HOH . L 6 HOH A 110 1010 1010 HOH HOH . L 6 HOH A 111 1011 1011 HOH HOH . L 6 HOH A 112 1012 1012 HOH HOH . L 6 HOH A 113 1013 1013 HOH HOH . L 6 HOH A 114 1014 1014 HOH HOH . L 6 HOH A 115 1015 1015 HOH HOH . L 6 HOH A 116 1016 1016 HOH HOH . L 6 HOH A 117 1017 1017 HOH HOH . L 6 HOH A 118 1018 1018 HOH HOH . L 6 HOH A 119 1019 1019 HOH HOH . L 6 HOH A 120 1020 1020 HOH HOH . L 6 HOH A 121 1021 1021 HOH HOH . L 6 HOH A 122 1022 1022 HOH HOH . L 6 HOH A 123 1023 1023 HOH HOH . L 6 HOH A 124 1024 1024 HOH HOH . L 6 HOH A 125 1025 1025 HOH HOH . L 6 HOH A 126 1026 1026 HOH HOH . L 6 HOH A 127 1027 1027 HOH HOH . L 6 HOH A 128 1028 1028 HOH HOH . L 6 HOH A 129 1029 1029 HOH HOH . L 6 HOH A 130 1030 1030 HOH HOH . L 6 HOH A 131 1031 1031 HOH HOH . L 6 HOH A 132 1032 1032 HOH HOH . L 6 HOH A 133 1033 1033 HOH HOH . L 6 HOH A 134 1034 1034 HOH HOH . L 6 HOH A 135 1035 1035 HOH HOH . L 6 HOH A 136 1036 1036 HOH HOH . L 6 HOH A 137 1037 1037 HOH HOH . L 6 HOH A 138 1038 1038 HOH HOH . L 6 HOH A 139 1039 1039 HOH HOH . L 6 HOH A 140 1040 1040 HOH HOH . L 6 HOH A 141 1041 1041 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . B 2 -0.548 42.368 12.565 1 75.09 ? C1 BOG 701 A 1 HETATM 2 O O1 BOG . . . B 2 -0.171 41.065 13.037 1 74.7 ? O1 BOG 701 A 1 HETATM 3 C C2 BOG . . . B 2 -2.108 42.496 12.552 1 75.01 ? C2 BOG 701 A 1 HETATM 4 O O2 BOG . . . B 2 -2.658 41.491 11.704 1 76.16 ? O2 BOG 701 A 1 HETATM 5 C C3 BOG . . . B 2 -2.504 43.923 12.057 1 74.77 ? C3 BOG 701 A 1 HETATM 6 O O3 BOG . . . B 2 -3.907 44.056 12.027 1 74.36 ? O3 BOG 701 A 1 HETATM 7 C C4 BOG . . . B 2 -1.892 44.968 13.018 1 74.84 ? C4 BOG 701 A 1 HETATM 8 O O4 BOG . . . B 2 -2.246 46.289 12.605 1 74.65 ? O4 BOG 701 A 1 HETATM 9 C C5 BOG . . . B 2 -0.322 44.804 13.043 1 74.6 ? C5 BOG 701 A 1 HETATM 10 O O5 BOG . . . B 2 0.009 43.428 13.449 1 75.07 ? O5 BOG 701 A 1 HETATM 11 C C6 BOG . . . B 2 0.318 45.815 14.019 1 73.67 ? C6 BOG 701 A 1 HETATM 12 O O6 BOG . . . B 2 -0.078 45.586 15.374 1 71.93 ? O6 BOG 701 A 1 HETATM 13 C C1' BOG . . . B 2 1.243 40.882 13.063 1 74.37 ? C1' BOG 701 A 1 HETATM 14 C C2' BOG . . . B 2 1.545 39.416 13.251 1 73.76 ? C2' BOG 701 A 1 HETATM 15 C C3' BOG . . . B 2 2.193 39.223 14.593 1 73.73 ? C3' BOG 701 A 1 HETATM 16 C C4' BOG . . . B 2 2.525 37.775 14.883 1 73.83 ? C4' BOG 701 A 1 HETATM 17 C C5' BOG . . . B 2 3.157 37.654 16.261 1 74.15 ? C5' BOG 701 A 1 HETATM 18 C C6' BOG . . . B 2 2.612 36.455 16.999 1 73.99 ? C6' BOG 701 A 1 HETATM 19 C C7' BOG . . . B 2 3.214 36.323 18.369 1 73.94 ? C7' BOG 701 A 1 HETATM 20 C C8' BOG . . . B 2 2.646 35.126 19.073 1 74.28 ? C8' BOG 701 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #