data_2QB4 # _model_server_result.job_id ULffxmPcdbEL8dhXXtRhQg _model_server_result.datetime_utc '2024-10-14 03:12:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qb4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":801}' # _entry.id 2QB4 # _exptl.entry_id 2QB4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.381 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.02 _cell.angle_gamma 90 _cell.entry_id 2QB4 _cell.length_a 88.29 _cell.length_b 86.77 _cell.length_c 81.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QB4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,B,C,D,E,F,G,H,I,J,K,L 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 79.768857 0 80.801934 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc5 A OG1 THR 254 A THR 254 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc6 A O THR 254 A THR 254 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc11 I OXT LEU . A LEU 601 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? # _chem_comp.formula 'C18 H22 N2' _chem_comp.formula_weight 266.381 _chem_comp.id DSM _chem_comp.mon_nstd_flag . _chem_comp.name 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Desipramine;Norpramin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 N2 DSM sing 118 n n C18 H181 DSM sing 119 n n C18 H182 DSM sing 120 n n C18 H183 DSM sing 121 n n N2 C17 DSM sing 122 n n N2 HN2 DSM sing 123 n n C17 C16 DSM sing 124 n n C17 H171 DSM sing 125 n n C17 H172 DSM sing 126 n n C16 C15 DSM sing 127 n n C16 H161 DSM sing 128 n n C16 H162 DSM sing 129 n n C15 N1 DSM sing 130 n n C15 H151 DSM sing 131 n n C15 H152 DSM sing 132 n n N1 C11 DSM sing 133 n n N1 C14 DSM sing 134 n n C14 C1 DSM sing 135 n y C14 C13 DSM doub 136 n y C1 C2 DSM doub 137 n y C1 H1 DSM sing 138 n n C2 C3 DSM sing 139 n y C2 H2 DSM sing 140 n n C3 C4 DSM doub 141 n y C3 H3 DSM sing 142 n n C4 C13 DSM sing 143 n y C4 H4 DSM sing 144 n n C13 C5 DSM sing 145 n n C5 C6 DSM sing 146 n n C5 H51 DSM sing 147 n n C5 H52 DSM sing 148 n n C6 C12 DSM sing 149 n n C6 H61 DSM sing 150 n n C6 H62 DSM sing 151 n n C12 C11 DSM doub 152 n y C12 C7 DSM sing 153 n y C11 C10 DSM sing 154 n y C7 C8 DSM doub 155 n y C7 H7 DSM sing 156 n n C8 C9 DSM sing 157 n y C8 H8 DSM sing 158 n n C9 C10 DSM doub 159 n y C9 H9 DSM sing 160 n n C10 H10 DSM sing 161 n n # _atom_sites.entry_id 2QB4 _atom_sites.fract_transf_matrix[1][1] 0.011326 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001194 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011525 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 701 701 BOG BOG . C 2 BOG A 1 702 702 BOG BOG . D 2 BOG A 1 703 703 BOG BOG . E 2 BOG A 1 704 704 BOG BOG . F 2 BOG A 1 705 705 BOG BOG . G 3 NA A 1 751 751 NA NA . H 3 NA A 1 752 752 NA NA . I 4 LEU A 1 601 601 LEU LEU . J 5 DSM A 1 801 801 DSM DMI . K 5 DSM A 1 802 802 DSM DMI . L 6 HOH A 1 901 901 HOH HOH . L 6 HOH A 2 902 902 HOH HOH . L 6 HOH A 3 903 903 HOH HOH . L 6 HOH A 4 904 904 HOH HOH . L 6 HOH A 5 905 905 HOH HOH . L 6 HOH A 6 906 906 HOH HOH . L 6 HOH A 7 907 907 HOH HOH . L 6 HOH A 8 908 908 HOH HOH . L 6 HOH A 9 909 909 HOH HOH . L 6 HOH A 10 910 910 HOH HOH . L 6 HOH A 11 911 911 HOH HOH . L 6 HOH A 12 912 912 HOH HOH . L 6 HOH A 13 913 913 HOH HOH . L 6 HOH A 14 914 914 HOH HOH . L 6 HOH A 15 915 915 HOH HOH . L 6 HOH A 16 916 916 HOH HOH . L 6 HOH A 17 917 917 HOH HOH . L 6 HOH A 18 918 918 HOH HOH . L 6 HOH A 19 919 919 HOH HOH . L 6 HOH A 20 920 920 HOH HOH . L 6 HOH A 21 921 921 HOH HOH . L 6 HOH A 22 922 922 HOH HOH . L 6 HOH A 23 923 923 HOH HOH . L 6 HOH A 24 924 924 HOH HOH . L 6 HOH A 25 925 925 HOH HOH . L 6 HOH A 26 926 926 HOH HOH . L 6 HOH A 27 927 927 HOH HOH . L 6 HOH A 28 928 928 HOH HOH . L 6 HOH A 29 929 929 HOH HOH . L 6 HOH A 30 930 930 HOH HOH . L 6 HOH A 31 931 931 HOH HOH . L 6 HOH A 32 932 932 HOH HOH . L 6 HOH A 33 933 933 HOH HOH . L 6 HOH A 34 934 934 HOH HOH . L 6 HOH A 35 935 935 HOH HOH . L 6 HOH A 36 936 936 HOH HOH . L 6 HOH A 37 937 937 HOH HOH . L 6 HOH A 38 938 938 HOH HOH . L 6 HOH A 39 939 939 HOH HOH . L 6 HOH A 40 940 940 HOH HOH . L 6 HOH A 41 941 941 HOH HOH . L 6 HOH A 42 942 942 HOH HOH . L 6 HOH A 43 943 943 HOH HOH . L 6 HOH A 44 944 944 HOH HOH . L 6 HOH A 45 945 945 HOH HOH . L 6 HOH A 46 946 946 HOH HOH . L 6 HOH A 47 947 947 HOH HOH . L 6 HOH A 48 948 948 HOH HOH . L 6 HOH A 49 949 949 HOH HOH . L 6 HOH A 50 950 950 HOH HOH . L 6 HOH A 51 951 951 HOH HOH . L 6 HOH A 52 952 952 HOH HOH . L 6 HOH A 53 953 953 HOH HOH . L 6 HOH A 54 954 954 HOH HOH . L 6 HOH A 55 955 955 HOH HOH . L 6 HOH A 56 956 956 HOH HOH . L 6 HOH A 57 957 957 HOH HOH . L 6 HOH A 58 958 958 HOH HOH . L 6 HOH A 59 959 959 HOH HOH . L 6 HOH A 60 960 960 HOH HOH . L 6 HOH A 61 961 961 HOH HOH . L 6 HOH A 62 962 962 HOH HOH . L 6 HOH A 63 963 963 HOH HOH . L 6 HOH A 64 964 964 HOH HOH . L 6 HOH A 65 965 965 HOH HOH . L 6 HOH A 66 966 966 HOH HOH . L 6 HOH A 67 967 967 HOH HOH . L 6 HOH A 68 968 968 HOH HOH . L 6 HOH A 69 969 969 HOH HOH . L 6 HOH A 70 970 970 HOH HOH . L 6 HOH A 71 971 971 HOH HOH . L 6 HOH A 72 972 972 HOH HOH . L 6 HOH A 73 973 973 HOH HOH . L 6 HOH A 74 974 974 HOH HOH . L 6 HOH A 75 975 975 HOH HOH . L 6 HOH A 76 976 976 HOH HOH . L 6 HOH A 77 977 977 HOH HOH . L 6 HOH A 78 978 978 HOH HOH . L 6 HOH A 79 979 979 HOH HOH . L 6 HOH A 80 980 980 HOH HOH . L 6 HOH A 81 981 981 HOH HOH . L 6 HOH A 82 982 982 HOH HOH . L 6 HOH A 83 983 983 HOH HOH . L 6 HOH A 84 984 984 HOH HOH . L 6 HOH A 85 985 985 HOH HOH . L 6 HOH A 86 986 986 HOH HOH . L 6 HOH A 87 987 987 HOH HOH . L 6 HOH A 88 988 988 HOH HOH . L 6 HOH A 89 989 989 HOH HOH . L 6 HOH A 90 990 990 HOH HOH . L 6 HOH A 91 991 991 HOH HOH . L 6 HOH A 92 992 992 HOH HOH . L 6 HOH A 93 993 993 HOH HOH . L 6 HOH A 94 994 994 HOH HOH . L 6 HOH A 95 995 995 HOH HOH . L 6 HOH A 96 996 996 HOH HOH . L 6 HOH A 97 997 997 HOH HOH . L 6 HOH A 98 998 998 HOH HOH . L 6 HOH A 99 999 999 HOH HOH . L 6 HOH A 100 1000 1000 HOH HOH . L 6 HOH A 101 1001 1001 HOH HOH . L 6 HOH A 102 1002 1002 HOH HOH . L 6 HOH A 103 1003 1003 HOH HOH . L 6 HOH A 104 1004 1004 HOH HOH . L 6 HOH A 105 1005 1005 HOH HOH . L 6 HOH A 106 1006 1006 HOH HOH . L 6 HOH A 107 1007 1007 HOH HOH . L 6 HOH A 108 1008 1008 HOH HOH . L 6 HOH A 109 1009 1009 HOH HOH . L 6 HOH A 110 1010 1010 HOH HOH . L 6 HOH A 111 1011 1011 HOH HOH . L 6 HOH A 112 1012 1012 HOH HOH . L 6 HOH A 113 1013 1013 HOH HOH . L 6 HOH A 114 1014 1014 HOH HOH . L 6 HOH A 115 1015 1015 HOH HOH . L 6 HOH A 116 1016 1016 HOH HOH . L 6 HOH A 117 1017 1017 HOH HOH . L 6 HOH A 118 1018 1018 HOH HOH . L 6 HOH A 119 1019 1019 HOH HOH . L 6 HOH A 120 1020 1020 HOH HOH . L 6 HOH A 121 1021 1021 HOH HOH . L 6 HOH A 122 1022 1022 HOH HOH . L 6 HOH A 123 1023 1023 HOH HOH . L 6 HOH A 124 1024 1024 HOH HOH . L 6 HOH A 125 1025 1025 HOH HOH . L 6 HOH A 126 1026 1026 HOH HOH . L 6 HOH A 127 1027 1027 HOH HOH . L 6 HOH A 128 1028 1028 HOH HOH . L 6 HOH A 129 1029 1029 HOH HOH . L 6 HOH A 130 1030 1030 HOH HOH . L 6 HOH A 131 1031 1031 HOH HOH . L 6 HOH A 132 1032 1032 HOH HOH . L 6 HOH A 133 1033 1033 HOH HOH . L 6 HOH A 134 1034 1034 HOH HOH . L 6 HOH A 135 1035 1035 HOH HOH . L 6 HOH A 136 1036 1036 HOH HOH . L 6 HOH A 137 1037 1037 HOH HOH . L 6 HOH A 138 1038 1038 HOH HOH . L 6 HOH A 139 1039 1039 HOH HOH . L 6 HOH A 140 1040 1040 HOH HOH . L 6 HOH A 141 1041 1041 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 DSM . . . J 5 29.732 16.733 24.814 1 38.54 ? C18 DSM 801 A 1 HETATM 2 N N2 DSM . . . J 5 28.666 17.681 25.183 1 36.36 ? N2 DSM 801 A 1 HETATM 3 C C17 DSM . . . J 5 28.68 18.894 24.309 1 36.92 ? C17 DSM 801 A 1 HETATM 4 C C16 DSM . . . J 5 27.95 20.063 24.905 1 35.14 ? C16 DSM 801 A 1 HETATM 5 C C15 DSM . . . J 5 28.277 21.388 24.161 1 32.45 ? C15 DSM 801 A 1 HETATM 6 N N1 DSM . . . J 5 27.605 21.628 22.815 1 29.3 ? N1 DSM 801 A 1 HETATM 7 C C14 DSM . . . J 5 26.367 20.966 22.476 1 29.42 ? C14 DSM 801 A 1 HETATM 8 C C1 DSM . . . J 5 25.192 21.048 23.29 1 28.72 ? C1 DSM 801 A 1 HETATM 9 C C2 DSM . . . J 5 24 20.371 22.904 1 30.96 ? C2 DSM 801 A 1 HETATM 10 C C3 DSM . . . J 5 23.965 19.666 21.692 1 31.44 ? C3 DSM 801 A 1 HETATM 11 C C4 DSM . . . J 5 25.105 19.597 20.905 1 31.42 ? C4 DSM 801 A 1 HETATM 12 C C13 DSM . . . J 5 26.304 20.263 21.256 1 29.21 ? C13 DSM 801 A 1 HETATM 13 C C5 DSM . . . J 5 27.468 20.141 20.345 1 28.19 ? C5 DSM 801 A 1 HETATM 14 C C6 DSM . . . J 5 27.867 21.426 19.634 1 27.79 ? C6 DSM 801 A 1 HETATM 15 C C12 DSM . . . J 5 28.233 22.664 20.514 1 27.94 ? C12 DSM 801 A 1 HETATM 16 C C11 DSM . . . J 5 28.105 22.731 21.994 1 28.45 ? C11 DSM 801 A 1 HETATM 17 C C7 DSM . . . J 5 28.727 23.808 19.86 1 26.81 ? C7 DSM 801 A 1 HETATM 18 C C8 DSM . . . J 5 29.086 24.974 20.531 1 26.69 ? C8 DSM 801 A 1 HETATM 19 C C9 DSM . . . J 5 28.977 25.056 21.921 1 28.04 ? C9 DSM 801 A 1 HETATM 20 C C10 DSM . . . J 5 28.487 23.944 22.645 1 26.43 ? C10 DSM 801 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 20 #