data_2QB4
#
_model_server_result.job_id            X4HqmoFIBrs4WIHYLsPUXQ 
_model_server_result.datetime_utc      '2024-11-24 02:03:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qb4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":802}' 
#
_entry.id    2QB4 
#
_exptl.entry_id    2QB4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              266.381 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.02 
_cell.angle_gamma         90 
_cell.entry_id            2QB4 
_cell.length_a            88.29 
_cell.length_b            86.77 
_cell.length_c            81.25 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QB4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA,PQS dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1 
A,B,C,D,E,F,G,H,I,J,K,L 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 79.768857 0 80.801934 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 20 A GLY 20 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc2 A O ALA 22 A ALA 22 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc3 A O VAL 23 A VAL 23 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc5 A OG1 THR 254 A THR 254 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc6 A O THR 254 A THR 254 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc8 A O ALA 351 A ALA 351 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc10 A OG SER 355 A SER 355 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc11 I OXT LEU . A LEU 601 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
#
_chem_comp.formula           'C18 H22 N2' 
_chem_comp.formula_weight    266.381 
_chem_comp.id                DSM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Desipramine;Norpramin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 N2 DSM sing 118 n n 
C18 H181 DSM sing 119 n n 
C18 H182 DSM sing 120 n n 
C18 H183 DSM sing 121 n n 
N2 C17 DSM sing 122 n n 
N2 HN2 DSM sing 123 n n 
C17 C16 DSM sing 124 n n 
C17 H171 DSM sing 125 n n 
C17 H172 DSM sing 126 n n 
C16 C15 DSM sing 127 n n 
C16 H161 DSM sing 128 n n 
C16 H162 DSM sing 129 n n 
C15 N1 DSM sing 130 n n 
C15 H151 DSM sing 131 n n 
C15 H152 DSM sing 132 n n 
N1 C11 DSM sing 133 n n 
N1 C14 DSM sing 134 n n 
C14 C1 DSM sing 135 n y 
C14 C13 DSM doub 136 n y 
C1 C2 DSM doub 137 n y 
C1 H1 DSM sing 138 n n 
C2 C3 DSM sing 139 n y 
C2 H2 DSM sing 140 n n 
C3 C4 DSM doub 141 n y 
C3 H3 DSM sing 142 n n 
C4 C13 DSM sing 143 n y 
C4 H4 DSM sing 144 n n 
C13 C5 DSM sing 145 n n 
C5 C6 DSM sing 146 n n 
C5 H51 DSM sing 147 n n 
C5 H52 DSM sing 148 n n 
C6 C12 DSM sing 149 n n 
C6 H61 DSM sing 150 n n 
C6 H62 DSM sing 151 n n 
C12 C11 DSM doub 152 n y 
C12 C7 DSM sing 153 n y 
C11 C10 DSM sing 154 n y 
C7 C8 DSM doub 155 n y 
C7 H7 DSM sing 156 n n 
C8 C9 DSM sing 157 n y 
C8 H8 DSM sing 158 n n 
C9 C10 DSM doub 159 n y 
C9 H9 DSM sing 160 n n 
C10 H10 DSM sing 161 n n 
#
_atom_sites.entry_id                     2QB4 
_atom_sites.fract_transf_matrix[1][1]    0.011326 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001194 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011525 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BOG A 1 701 701 BOG BOG . 
C 2 BOG A 1 702 702 BOG BOG . 
D 2 BOG A 1 703 703 BOG BOG . 
E 2 BOG A 1 704 704 BOG BOG . 
F 2 BOG A 1 705 705 BOG BOG . 
G 3 NA A 1 751 751 NA NA . 
H 3 NA A 1 752 752 NA NA . 
I 4 LEU A 1 601 601 LEU LEU . 
J 5 DSM A 1 801 801 DSM DMI . 
K 5 DSM A 1 802 802 DSM DMI . 
L 6 HOH A 1 901 901 HOH HOH . 
L 6 HOH A 2 902 902 HOH HOH . 
L 6 HOH A 3 903 903 HOH HOH . 
L 6 HOH A 4 904 904 HOH HOH . 
L 6 HOH A 5 905 905 HOH HOH . 
L 6 HOH A 6 906 906 HOH HOH . 
L 6 HOH A 7 907 907 HOH HOH . 
L 6 HOH A 8 908 908 HOH HOH . 
L 6 HOH A 9 909 909 HOH HOH . 
L 6 HOH A 10 910 910 HOH HOH . 
L 6 HOH A 11 911 911 HOH HOH . 
L 6 HOH A 12 912 912 HOH HOH . 
L 6 HOH A 13 913 913 HOH HOH . 
L 6 HOH A 14 914 914 HOH HOH . 
L 6 HOH A 15 915 915 HOH HOH . 
L 6 HOH A 16 916 916 HOH HOH . 
L 6 HOH A 17 917 917 HOH HOH . 
L 6 HOH A 18 918 918 HOH HOH . 
L 6 HOH A 19 919 919 HOH HOH . 
L 6 HOH A 20 920 920 HOH HOH . 
L 6 HOH A 21 921 921 HOH HOH . 
L 6 HOH A 22 922 922 HOH HOH . 
L 6 HOH A 23 923 923 HOH HOH . 
L 6 HOH A 24 924 924 HOH HOH . 
L 6 HOH A 25 925 925 HOH HOH . 
L 6 HOH A 26 926 926 HOH HOH . 
L 6 HOH A 27 927 927 HOH HOH . 
L 6 HOH A 28 928 928 HOH HOH . 
L 6 HOH A 29 929 929 HOH HOH . 
L 6 HOH A 30 930 930 HOH HOH . 
L 6 HOH A 31 931 931 HOH HOH . 
L 6 HOH A 32 932 932 HOH HOH . 
L 6 HOH A 33 933 933 HOH HOH . 
L 6 HOH A 34 934 934 HOH HOH . 
L 6 HOH A 35 935 935 HOH HOH . 
L 6 HOH A 36 936 936 HOH HOH . 
L 6 HOH A 37 937 937 HOH HOH . 
L 6 HOH A 38 938 938 HOH HOH . 
L 6 HOH A 39 939 939 HOH HOH . 
L 6 HOH A 40 940 940 HOH HOH . 
L 6 HOH A 41 941 941 HOH HOH . 
L 6 HOH A 42 942 942 HOH HOH . 
L 6 HOH A 43 943 943 HOH HOH . 
L 6 HOH A 44 944 944 HOH HOH . 
L 6 HOH A 45 945 945 HOH HOH . 
L 6 HOH A 46 946 946 HOH HOH . 
L 6 HOH A 47 947 947 HOH HOH . 
L 6 HOH A 48 948 948 HOH HOH . 
L 6 HOH A 49 949 949 HOH HOH . 
L 6 HOH A 50 950 950 HOH HOH . 
L 6 HOH A 51 951 951 HOH HOH . 
L 6 HOH A 52 952 952 HOH HOH . 
L 6 HOH A 53 953 953 HOH HOH . 
L 6 HOH A 54 954 954 HOH HOH . 
L 6 HOH A 55 955 955 HOH HOH . 
L 6 HOH A 56 956 956 HOH HOH . 
L 6 HOH A 57 957 957 HOH HOH . 
L 6 HOH A 58 958 958 HOH HOH . 
L 6 HOH A 59 959 959 HOH HOH . 
L 6 HOH A 60 960 960 HOH HOH . 
L 6 HOH A 61 961 961 HOH HOH . 
L 6 HOH A 62 962 962 HOH HOH . 
L 6 HOH A 63 963 963 HOH HOH . 
L 6 HOH A 64 964 964 HOH HOH . 
L 6 HOH A 65 965 965 HOH HOH . 
L 6 HOH A 66 966 966 HOH HOH . 
L 6 HOH A 67 967 967 HOH HOH . 
L 6 HOH A 68 968 968 HOH HOH . 
L 6 HOH A 69 969 969 HOH HOH . 
L 6 HOH A 70 970 970 HOH HOH . 
L 6 HOH A 71 971 971 HOH HOH . 
L 6 HOH A 72 972 972 HOH HOH . 
L 6 HOH A 73 973 973 HOH HOH . 
L 6 HOH A 74 974 974 HOH HOH . 
L 6 HOH A 75 975 975 HOH HOH . 
L 6 HOH A 76 976 976 HOH HOH . 
L 6 HOH A 77 977 977 HOH HOH . 
L 6 HOH A 78 978 978 HOH HOH . 
L 6 HOH A 79 979 979 HOH HOH . 
L 6 HOH A 80 980 980 HOH HOH . 
L 6 HOH A 81 981 981 HOH HOH . 
L 6 HOH A 82 982 982 HOH HOH . 
L 6 HOH A 83 983 983 HOH HOH . 
L 6 HOH A 84 984 984 HOH HOH . 
L 6 HOH A 85 985 985 HOH HOH . 
L 6 HOH A 86 986 986 HOH HOH . 
L 6 HOH A 87 987 987 HOH HOH . 
L 6 HOH A 88 988 988 HOH HOH . 
L 6 HOH A 89 989 989 HOH HOH . 
L 6 HOH A 90 990 990 HOH HOH . 
L 6 HOH A 91 991 991 HOH HOH . 
L 6 HOH A 92 992 992 HOH HOH . 
L 6 HOH A 93 993 993 HOH HOH . 
L 6 HOH A 94 994 994 HOH HOH . 
L 6 HOH A 95 995 995 HOH HOH . 
L 6 HOH A 96 996 996 HOH HOH . 
L 6 HOH A 97 997 997 HOH HOH . 
L 6 HOH A 98 998 998 HOH HOH . 
L 6 HOH A 99 999 999 HOH HOH . 
L 6 HOH A 100 1000 1000 HOH HOH . 
L 6 HOH A 101 1001 1001 HOH HOH . 
L 6 HOH A 102 1002 1002 HOH HOH . 
L 6 HOH A 103 1003 1003 HOH HOH . 
L 6 HOH A 104 1004 1004 HOH HOH . 
L 6 HOH A 105 1005 1005 HOH HOH . 
L 6 HOH A 106 1006 1006 HOH HOH . 
L 6 HOH A 107 1007 1007 HOH HOH . 
L 6 HOH A 108 1008 1008 HOH HOH . 
L 6 HOH A 109 1009 1009 HOH HOH . 
L 6 HOH A 110 1010 1010 HOH HOH . 
L 6 HOH A 111 1011 1011 HOH HOH . 
L 6 HOH A 112 1012 1012 HOH HOH . 
L 6 HOH A 113 1013 1013 HOH HOH . 
L 6 HOH A 114 1014 1014 HOH HOH . 
L 6 HOH A 115 1015 1015 HOH HOH . 
L 6 HOH A 116 1016 1016 HOH HOH . 
L 6 HOH A 117 1017 1017 HOH HOH . 
L 6 HOH A 118 1018 1018 HOH HOH . 
L 6 HOH A 119 1019 1019 HOH HOH . 
L 6 HOH A 120 1020 1020 HOH HOH . 
L 6 HOH A 121 1021 1021 HOH HOH . 
L 6 HOH A 122 1022 1022 HOH HOH . 
L 6 HOH A 123 1023 1023 HOH HOH . 
L 6 HOH A 124 1024 1024 HOH HOH . 
L 6 HOH A 125 1025 1025 HOH HOH . 
L 6 HOH A 126 1026 1026 HOH HOH . 
L 6 HOH A 127 1027 1027 HOH HOH . 
L 6 HOH A 128 1028 1028 HOH HOH . 
L 6 HOH A 129 1029 1029 HOH HOH . 
L 6 HOH A 130 1030 1030 HOH HOH . 
L 6 HOH A 131 1031 1031 HOH HOH . 
L 6 HOH A 132 1032 1032 HOH HOH . 
L 6 HOH A 133 1033 1033 HOH HOH . 
L 6 HOH A 134 1034 1034 HOH HOH . 
L 6 HOH A 135 1035 1035 HOH HOH . 
L 6 HOH A 136 1036 1036 HOH HOH . 
L 6 HOH A 137 1037 1037 HOH HOH . 
L 6 HOH A 138 1038 1038 HOH HOH . 
L 6 HOH A 139 1039 1039 HOH HOH . 
L 6 HOH A 140 1040 1040 HOH HOH . 
L 6 HOH A 141 1041 1041 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 DSM . . . K 5 41.866 40.403 2.743 1 85.25 ? C18 DSM 802 A 1 
HETATM 2 N N2 DSM . . . K 5 41.512 40.959 4.075 1 85.86 ? N2 DSM 802 A 1 
HETATM 3 C C17 DSM . . . K 5 40.768 39.993 4.97 1 85.88 ? C17 DSM 802 A 1 
HETATM 4 C C16 DSM . . . K 5 41.675 39.183 5.856 1 85.9 ? C16 DSM 802 A 1 
HETATM 5 C C15 DSM . . . K 5 41.938 39.899 7.199 1 85.47 ? C15 DSM 802 A 1 
HETATM 6 N N1 DSM . . . K 5 40.951 39.58 8.279 1 85.27 ? N1 DSM 802 A 1 
HETATM 7 C C14 DSM . . . K 5 40.947 38.249 8.836 1 85.73 ? C14 DSM 802 A 1 
HETATM 8 C C1 DSM . . . K 5 40.149 37.205 8.271 1 86.49 ? C1 DSM 802 A 1 
HETATM 9 C C2 DSM . . . K 5 40.161 35.893 8.837 1 86.75 ? C2 DSM 802 A 1 
HETATM 10 C C3 DSM . . . K 5 40.956 35.635 9.958 1 86.03 ? C3 DSM 802 A 1 
HETATM 11 C C4 DSM . . . K 5 41.728 36.649 10.503 1 85.41 ? C4 DSM 802 A 1 
HETATM 12 C C13 DSM . . . K 5 41.746 37.962 9.974 1 85.55 ? C13 DSM 802 A 1 
HETATM 13 C C5 DSM . . . K 5 42.615 38.964 10.648 1 85.31 ? C5 DSM 802 A 1 
HETATM 14 C C6 DSM . . . K 5 41.947 40.163 11.296 1 84.83 ? C6 DSM 802 A 1 
HETATM 15 C C12 DSM . . . K 5 40.928 41.005 10.475 1 84.81 ? C12 DSM 802 A 1 
HETATM 16 C C11 DSM . . . K 5 40.463 40.702 9.091 1 85.18 ? C11 DSM 802 A 1 
HETATM 17 C C7 DSM . . . K 5 40.351 42.131 11.119 1 84.09 ? C7 DSM 802 A 1 
HETATM 18 C C8 DSM . . . K 5 39.429 42.971 10.499 1 83.89 ? C8 DSM 802 A 1 
HETATM 19 C C9 DSM . . . K 5 38.992 42.7 9.197 1 84.15 ? C9 DSM 802 A 1 
HETATM 20 C C10 DSM . . . K 5 39.521 41.592 8.495 1 84.79 ? C10 DSM 802 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#